Wall clock time and date at job start Mon Mar 30 2020 06:15:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.68342 * 2 1 4 4 C 1.53415 * 109.68612 * 120.52331 * 2 1 3 5 5 C 1.53067 * 108.30013 * 54.95865 * 4 2 1 6 6 H 1.08994 * 109.43530 * 288.14615 * 5 4 2 7 7 N 1.46895 * 109.43295 * 168.27686 * 5 4 2 8 8 C 1.50795 * 109.69163 * 48.21032 * 5 4 2 9 9 C 1.38595 * 118.69311 * 162.36399 * 8 5 4 10 10 C 1.37961 * 120.41764 * 179.78116 * 9 8 5 11 11 C 1.38937 * 119.90415 * 359.95217 * 10 9 8 12 12 O 1.35749 * 120.09069 * 180.02562 * 11 10 9 13 13 C 1.34834 * 117.00402 * 5.53046 * 12 11 10 14 14 H 1.08004 * 119.99375 * 354.94555 * 13 12 11 15 15 C 1.38652 * 120.00587 * 174.94789 * 13 12 11 16 16 N 1.31558 * 119.99554 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 120.00246 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47178 * 179.97438 * 17 15 13 19 19 H 1.48506 * 109.47232 * 299.99748 * 17 15 13 20 20 H 1.48501 * 109.47161 * 59.99659 * 17 15 13 21 21 C 1.38601 * 119.81558 * 0.32150 * 11 10 9 22 22 C 1.38461 * 121.37633 * 342.21021 * 8 5 4 23 23 O 1.35863 * 121.79537 * 0.45788 * 22 8 5 24 24 H 1.08998 * 109.47243 * 299.47250 * 1 2 3 25 25 H 1.09000 * 109.47410 * 59.47211 * 1 2 3 26 26 H 1.09007 * 109.47573 * 179.47369 * 1 2 3 27 27 H 1.08998 * 109.46884 * 180.52901 * 3 2 1 28 28 H 1.08994 * 109.46591 * 300.52593 * 3 2 1 29 29 H 1.08998 * 109.47164 * 60.52570 * 3 2 1 30 30 H 1.08993 * 109.69794 * 295.25983 * 4 2 1 31 31 H 1.08992 * 109.69458 * 174.65768 * 4 2 1 32 32 H 1.00900 * 110.99982 * 179.77637 * 7 5 4 33 33 H 1.00904 * 111.00323 * 303.72956 * 7 5 4 34 34 H 1.08005 * 119.79125 * 359.80915 * 9 8 5 35 35 H 1.07995 * 120.04467 * 179.97438 * 10 9 8 36 36 H 0.96997 * 120.00440 * 0.02562 * 16 15 13 37 37 H 1.08000 * 119.92008 * 179.77205 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0453 1.4406 0.0000 4 6 2.0467 -0.7336 1.2443 5 6 1.4230 -2.1312 1.2720 6 1 0.3656 -2.0515 1.5238 7 7 2.1049 -2.9508 2.2824 8 6 1.5688 -2.7795 -0.0817 9 6 1.4152 -4.1533 -0.1815 10 6 1.5367 -4.7828 -1.4031 11 6 1.8136 -4.0370 -2.5421 12 8 1.9333 -4.6525 -3.7461 13 6 1.6596 -5.9720 -3.7891 14 1 1.4402 -6.5079 -2.8774 15 6 1.6597 -6.6410 -5.0036 16 7 1.9264 -5.9881 -6.1141 17 14 1.2797 -8.4689 -5.0631 18 1 1.3429 -8.9421 -6.4692 19 1 2.2753 -9.2084 -4.2462 20 1 -0.0818 -8.7094 -4.5211 21 6 1.9733 -2.6637 -2.4447 22 6 1.8472 -2.0315 -1.2131 23 8 2.0110 -0.6839 -1.1578 24 1 -0.3633 0.5056 0.8946 25 1 -0.3634 0.5220 -0.8852 26 1 -0.3634 -1.0277 -0.0094 27 1 3.1352 1.4365 -0.0095 28 1 1.6761 1.9584 -0.8852 29 1 1.6916 1.9530 0.8946 30 1 1.7582 -0.1848 2.1407 31 1 3.1325 -0.8168 1.1972 32 1 1.7090 -3.8780 2.3232 33 1 3.0978 -2.9890 2.1072 34 1 1.1987 -4.7347 0.7026 35 1 1.4163 -5.8537 -1.4738 36 1 2.1234 -5.0388 -6.0833 37 1 2.1923 -2.0828 -3.3284 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043460128.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:11 Heat of formation + Delta-G solvation = -53.227653 kcal Electronic energy + Delta-G solvation = -20105.859239 eV Core-core repulsion = 17041.470392 eV Total energy + Delta-G solvation = -3064.388847 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.72730 -38.65619 -36.37051 -35.43996 -33.05141 -32.16056 -29.68431 -28.98722 -27.48964 -27.28455 -25.01474 -22.75302 -22.15999 -21.55877 -19.42284 -18.05663 -17.36273 -16.40313 -15.78116 -15.42169 -15.35113 -14.83195 -14.37526 -14.09078 -13.83945 -13.77802 -13.41595 -13.26066 -12.79391 -12.60054 -12.21975 -12.12088 -11.98655 -11.84281 -11.54858 -11.07124 -10.95275 -10.75857 -10.59262 -10.35925 -10.32366 -9.99642 -9.49295 -8.87770 -8.70726 -7.85905 -7.26790 -6.82894 -4.12856 2.05562 2.13308 3.20227 3.25266 3.40721 3.43517 4.09604 4.30141 4.51566 4.69631 4.79839 5.03284 5.07179 5.09036 5.13713 5.24368 5.42369 5.42881 5.49532 5.59318 5.68373 5.79557 5.82494 5.98670 6.02125 6.07366 6.13771 6.23702 6.24450 6.70876 6.85002 6.93717 7.10554 7.22073 7.35298 7.45358 7.50619 7.99355 8.33534 8.85252 9.52660 10.60874 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.033517 B = 0.004951 C = 0.004488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.199062 B = 5653.907355 C = 6237.936483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.115 3.885 3 C -0.137 4.137 4 C -0.135 4.135 5 C 0.149 3.851 6 H 0.080 0.920 7 N -0.839 5.839 8 C -0.290 4.290 9 C -0.043 4.043 10 C -0.250 4.250 11 C 0.187 3.813 12 O -0.195 6.195 13 C -0.473 4.473 14 H 0.085 0.915 15 C 0.011 3.989 16 N -0.877 5.877 17 Si 1.096 2.904 18 H -0.272 1.272 19 H -0.281 1.281 20 H -0.281 1.281 21 C -0.230 4.230 22 C 0.184 3.816 23 O -0.312 6.312 24 H 0.068 0.932 25 H 0.064 0.936 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.340 0.660 33 H 0.339 0.661 34 H 0.108 0.892 35 H 0.130 0.870 36 H 0.283 0.717 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.503 8.789 13.797 16.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.076 3.924 3 C -0.194 4.194 4 C -0.173 4.173 5 C 0.038 3.962 6 H 0.098 0.902 7 N -0.367 5.367 8 C -0.293 4.293 9 C -0.062 4.062 10 C -0.270 4.270 11 C 0.133 3.867 12 O -0.099 6.099 13 C -0.549 4.549 14 H 0.103 0.897 15 C -0.195 4.195 16 N -0.509 5.509 17 Si 0.920 3.080 18 H -0.197 1.197 19 H -0.207 1.207 20 H -0.207 1.207 21 C -0.250 4.250 22 C 0.139 3.861 23 O -0.227 6.227 24 H 0.087 0.913 25 H 0.083 0.917 26 H 0.087 0.913 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.099 0.901 31 H 0.091 0.909 32 H 0.154 0.846 33 H 0.151 0.849 34 H 0.126 0.874 35 H 0.148 0.852 36 H 0.093 0.907 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -1.772 8.218 12.893 15.391 hybrid contribution 0.301 0.499 0.496 0.765 sum -1.471 8.717 13.388 16.044 Atomic orbital electron populations 1.22420 0.94776 1.03504 1.02586 1.21771 0.93794 0.92380 0.84414 1.21759 1.02071 0.92810 1.02742 1.22208 1.01304 0.95927 0.97844 1.20031 0.98075 0.91661 0.86431 0.90169 1.59175 1.08373 1.18830 1.50332 1.20090 1.19090 0.94748 0.95354 1.20377 0.96430 0.92804 0.96546 1.21060 1.12747 1.00884 0.92264 1.18747 0.91271 0.90665 0.86023 1.83657 1.75040 1.24948 1.26262 1.22237 1.53689 0.81131 0.97847 0.89736 1.26583 0.95488 1.07618 0.89763 1.70567 1.39600 1.12436 1.28265 0.83100 0.76817 0.71010 0.77057 1.19701 1.20674 1.20684 1.19385 1.17410 0.92164 0.96080 1.18009 0.94445 0.81338 0.92318 1.85983 1.76877 1.17535 1.42292 0.91293 0.91685 0.91300 0.91638 0.91488 0.90661 0.90060 0.90863 0.84630 0.84857 0.87391 0.85238 0.90697 0.85967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.12 8.14 37.15 0.30 -1.82 16 2 C 0.11 1.50 1.13 -90.41 -0.10 1.40 16 3 C -0.14 -1.39 8.88 37.16 0.33 -1.06 16 4 C -0.13 -1.67 4.66 -26.48 -0.12 -1.79 16 5 C 0.15 2.05 2.76 -68.79 -0.19 1.86 16 6 H 0.08 1.09 7.00 -51.93 -0.36 0.73 16 7 N -0.84 -10.29 9.09 -5.59 -0.05 -10.34 16 8 C -0.29 -5.02 4.98 -104.36 -0.52 -5.54 16 9 C -0.04 -0.77 9.23 -39.55 -0.36 -1.14 16 10 C -0.25 -5.46 9.17 -39.42 -0.36 -5.82 16 11 C 0.19 4.60 6.64 -39.19 -0.26 4.34 16 12 O -0.20 -5.55 9.16 0.04 0.00 -5.55 16 13 C -0.47 -13.27 9.49 30.89 0.29 -12.98 16 14 H 0.09 2.22 5.21 -52.48 -0.27 1.94 16 15 C 0.01 0.32 5.49 -17.52 -0.10 0.22 16 16 N -0.88 -26.14 13.70 55.48 0.76 -25.38 16 17 Si 1.10 23.46 29.92 -169.99 -5.09 18.38 16 18 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 19 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 20 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 21 C -0.23 -5.16 9.88 -39.16 -0.39 -5.54 16 22 C 0.18 3.58 6.01 -39.21 -0.24 3.34 16 23 O -0.31 -5.42 9.67 -19.31 -0.19 -5.61 16 24 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.07 0.95 5.88 -51.92 -0.31 0.64 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.07 0.95 8.09 -51.93 -0.42 0.53 16 32 H 0.34 3.92 7.32 -39.29 -0.29 3.63 16 33 H 0.34 4.11 8.94 -39.29 -0.35 3.76 16 34 H 0.11 1.61 6.61 -52.48 -0.35 1.27 16 35 H 0.13 2.84 5.64 -52.49 -0.30 2.54 16 36 H 0.28 8.65 7.97 -40.82 -0.33 8.32 16 37 H 0.12 2.72 8.06 -52.49 -0.42 2.30 16 LS Contribution 298.88 15.07 4.50 4.50 Total: -1.00 -30.58 298.88 -6.50 -37.08 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -4.72 Total: 11.46 kcal Atomic # 6 Polarization: -22.83 SS G_CDS: -1.71 Total: -24.55 kcal Atomic # 7 Polarization: -36.43 SS G_CDS: 0.71 Total: -35.72 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: -0.19 Total: -11.16 kcal Atomic # 14 Polarization: 23.46 SS G_CDS: -5.09 Total: 18.38 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -30.58 -6.50 -37.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043460128.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.147 kcal (2) G-P(sol) polarization free energy of solvation -30.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds