Wall clock time and date at job start Mon Mar 30 2020 06:15:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.68342 * 2 1 4 4 C 1.53415 * 109.68612 * 120.52331 * 2 1 3 5 5 C 1.53067 * 108.30013 * 54.95865 * 4 2 1 6 6 H 1.08994 * 109.43530 * 288.14615 * 5 4 2 7 7 N 1.46895 * 109.43295 * 168.27686 * 5 4 2 8 8 C 1.50795 * 109.69163 * 48.21032 * 5 4 2 9 9 C 1.38595 * 118.69311 * 162.36399 * 8 5 4 10 10 C 1.37961 * 120.41764 * 179.78116 * 9 8 5 11 11 C 1.38937 * 119.90415 * 359.95217 * 10 9 8 12 12 O 1.35749 * 120.09069 * 180.02562 * 11 10 9 13 13 C 1.34834 * 117.00402 * 5.53046 * 12 11 10 14 14 H 1.08004 * 119.99375 * 354.94555 * 13 12 11 15 15 C 1.38652 * 120.00587 * 174.94789 * 13 12 11 16 16 N 1.31558 * 119.99554 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 120.00246 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47178 * 179.97438 * 17 15 13 19 19 H 1.48506 * 109.47232 * 299.99748 * 17 15 13 20 20 H 1.48501 * 109.47161 * 59.99659 * 17 15 13 21 21 C 1.38601 * 119.81558 * 0.32150 * 11 10 9 22 22 C 1.38461 * 121.37633 * 342.21021 * 8 5 4 23 23 O 1.35863 * 121.79537 * 0.45788 * 22 8 5 24 24 H 1.08998 * 109.47243 * 299.47250 * 1 2 3 25 25 H 1.09000 * 109.47410 * 59.47211 * 1 2 3 26 26 H 1.09007 * 109.47573 * 179.47369 * 1 2 3 27 27 H 1.08998 * 109.46884 * 180.52901 * 3 2 1 28 28 H 1.08994 * 109.46591 * 300.52593 * 3 2 1 29 29 H 1.08998 * 109.47164 * 60.52570 * 3 2 1 30 30 H 1.08993 * 109.69794 * 295.25983 * 4 2 1 31 31 H 1.08992 * 109.69458 * 174.65768 * 4 2 1 32 32 H 1.00900 * 110.99982 * 179.77637 * 7 5 4 33 33 H 1.00904 * 111.00323 * 303.72956 * 7 5 4 34 34 H 1.08005 * 119.79125 * 359.80915 * 9 8 5 35 35 H 1.07995 * 120.04467 * 179.97438 * 10 9 8 36 36 H 0.96997 * 120.00440 * 0.02562 * 16 15 13 37 37 H 1.08000 * 119.92008 * 179.77205 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0453 1.4406 0.0000 4 6 2.0467 -0.7336 1.2443 5 6 1.4230 -2.1312 1.2720 6 1 0.3656 -2.0515 1.5238 7 7 2.1049 -2.9508 2.2824 8 6 1.5688 -2.7795 -0.0817 9 6 1.4152 -4.1533 -0.1815 10 6 1.5367 -4.7828 -1.4031 11 6 1.8136 -4.0370 -2.5421 12 8 1.9333 -4.6525 -3.7461 13 6 1.6596 -5.9720 -3.7891 14 1 1.4402 -6.5079 -2.8774 15 6 1.6597 -6.6410 -5.0036 16 7 1.9264 -5.9881 -6.1141 17 14 1.2797 -8.4689 -5.0631 18 1 1.3429 -8.9421 -6.4692 19 1 2.2753 -9.2084 -4.2462 20 1 -0.0818 -8.7094 -4.5211 21 6 1.9733 -2.6637 -2.4447 22 6 1.8472 -2.0315 -1.2131 23 8 2.0110 -0.6839 -1.1578 24 1 -0.3633 0.5056 0.8946 25 1 -0.3634 0.5220 -0.8852 26 1 -0.3634 -1.0277 -0.0094 27 1 3.1352 1.4365 -0.0095 28 1 1.6761 1.9584 -0.8852 29 1 1.6916 1.9530 0.8946 30 1 1.7582 -0.1848 2.1407 31 1 3.1325 -0.8168 1.1972 32 1 1.7090 -3.8780 2.3232 33 1 3.0978 -2.9890 2.1072 34 1 1.1987 -4.7347 0.7026 35 1 1.4163 -5.8537 -1.4738 36 1 2.1234 -5.0388 -6.0833 37 1 2.1923 -2.0828 -3.3284 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043460128.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:10 Heat of formation + Delta-G solvation = -74.942253 kcal Electronic energy + Delta-G solvation = -20106.800855 eV Core-core repulsion = 17041.470392 eV Total energy + Delta-G solvation = -3065.330463 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.10610 -40.43031 -37.90697 -36.73952 -34.53422 -33.88071 -31.30521 -30.33223 -28.61081 -28.29685 -27.02112 -24.21077 -23.65652 -22.89883 -21.12492 -19.50102 -19.03583 -17.81150 -17.32147 -16.89546 -16.56699 -16.34200 -15.80742 -15.57571 -15.52007 -15.24467 -14.81686 -14.73468 -14.08392 -13.73425 -13.52631 -13.31250 -13.06096 -13.03080 -12.79195 -12.65139 -12.36640 -12.18456 -12.02139 -11.94113 -11.62789 -11.48926 -11.18311 -10.76736 -9.88852 -9.51739 -8.99571 -8.93125 -6.30512 0.39053 0.48517 1.47710 1.60335 1.78157 2.05903 2.39311 2.68052 3.04854 3.35724 3.42898 3.65995 3.75398 3.82418 3.91371 4.06053 4.17832 4.26518 4.35664 4.46822 4.55726 4.67924 4.79497 4.82258 4.86559 4.86878 5.02416 5.04827 5.13096 5.16988 5.27137 5.33373 5.49293 5.58918 5.71937 6.12005 6.16338 6.48972 6.56272 6.81124 7.54440 8.45285 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.033517 B = 0.004951 C = 0.004488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.199062 B = 5653.907355 C = 6237.936483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.101 3.899 3 C -0.134 4.134 4 C -0.130 4.130 5 C 0.152 3.848 6 H 0.095 0.905 7 N -0.829 5.829 8 C -0.265 4.265 9 C -0.032 4.032 10 C -0.263 4.263 11 C 0.154 3.846 12 O -0.247 6.247 13 C -0.490 4.490 14 H 0.096 0.904 15 C -0.043 4.043 16 N -0.915 5.915 17 Si 1.147 2.853 18 H -0.274 1.274 19 H -0.258 1.258 20 H -0.259 1.259 21 C -0.252 4.252 22 C 0.189 3.811 23 O -0.327 6.327 24 H 0.104 0.896 25 H 0.059 0.941 26 H 0.049 0.951 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.109 0.891 30 H 0.114 0.886 31 H 0.068 0.932 32 H 0.347 0.653 33 H 0.342 0.658 34 H 0.151 0.849 35 H 0.125 0.875 36 H 0.259 0.741 37 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.290 9.511 18.095 20.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.063 3.937 3 C -0.191 4.191 4 C -0.168 4.168 5 C 0.040 3.960 6 H 0.113 0.887 7 N -0.358 5.358 8 C -0.268 4.268 9 C -0.051 4.051 10 C -0.283 4.283 11 C 0.103 3.897 12 O -0.154 6.154 13 C -0.565 4.565 14 H 0.113 0.887 15 C -0.239 4.239 16 N -0.549 5.549 17 Si 0.962 3.038 18 H -0.199 1.199 19 H -0.182 1.182 20 H -0.183 1.183 21 C -0.272 4.272 22 C 0.143 3.857 23 O -0.242 6.242 24 H 0.122 0.878 25 H 0.078 0.922 26 H 0.068 0.932 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.128 0.872 30 H 0.132 0.868 31 H 0.086 0.914 32 H 0.162 0.838 33 H 0.155 0.845 34 H 0.168 0.832 35 H 0.143 0.857 36 H 0.067 0.933 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -2.557 8.989 17.267 19.634 hybrid contribution 0.540 0.619 -0.504 0.963 sum -2.017 9.608 16.763 19.426 Atomic orbital electron populations 1.22435 0.93853 1.02673 1.04164 1.22313 0.94682 0.93500 0.83180 1.21823 1.02024 0.90873 1.04346 1.22223 1.00857 0.95116 0.98589 1.20171 0.99403 0.92466 0.83958 0.88689 1.59168 1.08554 1.19248 1.48811 1.20725 1.14748 0.94510 0.96800 1.20794 0.94376 0.93455 0.96430 1.21170 1.13471 1.00724 0.92886 1.19230 0.92728 0.91686 0.86067 1.83641 1.78058 1.25328 1.28420 1.22652 1.53642 0.81631 0.98589 0.88652 1.28493 0.94407 1.11879 0.89156 1.70709 1.43701 1.11106 1.29393 0.82578 0.78268 0.65549 0.77432 1.19859 1.18221 1.18314 1.19545 1.18526 0.91787 0.97367 1.18050 0.93280 0.82734 0.91681 1.85992 1.76883 1.16283 1.45089 0.87776 0.92224 0.93196 0.91803 0.91756 0.87240 0.86816 0.91369 0.83831 0.84502 0.83154 0.85719 0.93253 0.87548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.61 8.14 71.98 0.59 -3.03 16 2 C 0.10 2.29 1.13 -10.66 -0.01 2.28 16 3 C -0.13 -2.24 8.88 71.98 0.64 -1.60 16 4 C -0.13 -2.62 4.66 30.76 0.14 -2.48 16 5 C 0.15 3.49 2.76 44.22 0.12 3.61 16 6 H 0.10 2.06 7.00 -2.39 -0.02 2.04 16 7 N -0.83 -16.32 9.09 -171.60 -1.56 -17.88 16 8 C -0.26 -8.51 4.98 -19.70 -0.10 -8.61 16 9 C -0.03 -1.09 9.23 22.29 0.21 -0.89 16 10 C -0.26 -11.59 9.17 22.37 0.21 -11.39 16 11 C 0.15 7.95 6.64 22.52 0.15 8.10 16 12 O -0.25 -15.12 9.16 -22.77 -0.21 -15.33 16 13 C -0.49 -28.90 9.49 67.92 0.64 -28.25 16 14 H 0.10 5.18 5.21 -2.91 -0.02 5.16 16 15 C -0.04 -2.49 5.49 84.83 0.47 -2.03 16 16 N -0.91 -57.99 13.70 21.61 0.30 -57.69 16 17 Si 1.15 47.95 29.92 68.60 2.05 50.01 16 18 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 19 H -0.26 -9.70 7.11 99.48 0.71 -9.00 16 20 H -0.26 -9.76 7.11 99.48 0.71 -9.06 16 21 C -0.25 -11.87 9.88 22.54 0.22 -11.65 16 22 C 0.19 7.24 6.01 22.51 0.14 7.38 16 23 O -0.33 -11.04 9.67 -92.01 -0.89 -11.93 16 24 H 0.10 1.43 8.14 -2.39 -0.02 1.42 16 25 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.05 1.22 5.88 -2.38 -0.01 1.21 16 27 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.11 1.66 8.14 -2.39 -0.02 1.65 16 31 H 0.07 1.49 8.09 -2.39 -0.02 1.47 16 32 H 0.35 6.22 7.32 -89.69 -0.66 5.56 16 33 H 0.34 6.79 8.94 -89.69 -0.80 5.98 16 34 H 0.15 3.82 6.61 -2.91 -0.02 3.80 16 35 H 0.13 5.54 5.64 -2.91 -0.02 5.52 16 36 H 0.26 17.24 7.97 -92.71 -0.74 16.50 16 37 H 0.11 5.18 8.06 -2.91 -0.02 5.15 16 Total: -1.00 -72.85 298.88 2.78 -70.07 By element: Atomic # 1 Polarization: 31.62 SS G_CDS: -0.32 Total: 31.30 kcal Atomic # 6 Polarization: -51.96 SS G_CDS: 3.41 Total: -48.55 kcal Atomic # 7 Polarization: -74.31 SS G_CDS: -1.26 Total: -75.57 kcal Atomic # 8 Polarization: -26.15 SS G_CDS: -1.10 Total: -27.25 kcal Atomic # 14 Polarization: 47.95 SS G_CDS: 2.05 Total: 50.01 kcal Total: -72.85 2.78 -70.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043460128.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.871 kcal (2) G-P(sol) polarization free energy of solvation -72.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds