Wall clock time and date at job start Mon Mar 30 2020 06:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.71097 * 2 1 4 4 C 1.53402 * 109.68651 * 120.53817 * 2 1 3 5 5 C 1.53059 * 108.31390 * 184.44339 * 4 2 1 6 6 H 1.09001 * 109.43294 * 71.84140 * 5 4 2 7 7 N 1.46894 * 109.43643 * 191.70845 * 5 4 2 8 8 C 1.50800 * 109.69166 * 311.77420 * 5 4 2 9 9 C 1.38590 * 118.69295 * 197.77550 * 8 5 4 10 10 C 1.37956 * 120.40989 * 180.22583 * 9 8 5 11 11 C 1.38940 * 119.91385 * 0.07760 * 10 9 8 12 12 O 1.35746 * 120.09608 * 179.97438 * 11 10 9 13 13 C 1.34829 * 117.00170 * 354.44571 * 12 11 10 14 14 H 1.07999 * 120.00258 * 5.05164 * 13 12 11 15 15 C 1.38659 * 120.00177 * 185.04946 * 13 12 11 16 16 N 1.31555 * 119.99452 * 0.02562 * 15 13 12 17 17 Si 1.86791 * 120.00060 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.47208 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47241 * 120.00106 * 17 15 13 20 20 H 1.48493 * 109.47651 * 240.00428 * 17 15 13 21 21 C 1.38603 * 119.80856 * 359.90008 * 11 10 9 22 22 C 1.38460 * 121.36900 * 17.94491 * 8 5 4 23 23 O 1.35862 * 121.79761 * 359.28581 * 22 8 5 24 24 H 1.08998 * 109.46725 * 299.45776 * 1 2 3 25 25 H 1.08993 * 109.47030 * 59.45674 * 1 2 3 26 26 H 1.08992 * 109.46712 * 179.46154 * 1 2 3 27 27 H 1.09001 * 109.47443 * 180.54254 * 3 2 1 28 28 H 1.09007 * 109.47160 * 300.54222 * 3 2 1 29 29 H 1.09003 * 109.47473 * 60.54370 * 3 2 1 30 30 H 1.09002 * 109.69208 * 64.73762 * 4 2 1 31 31 H 1.08998 * 109.69625 * 304.15320 * 4 2 1 32 32 H 1.00898 * 111.00605 * 180.22640 * 7 5 4 33 33 H 1.00899 * 110.99983 * 304.17631 * 7 5 4 34 34 H 1.08005 * 119.79656 * 0.25206 * 9 8 5 35 35 H 1.07998 * 120.04480 * 180.02562 * 10 9 8 36 36 H 0.97000 * 119.99365 * 179.97438 * 16 15 13 37 37 H 1.08003 * 119.91835 * 179.70226 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0461 1.4404 0.0000 4 6 2.0468 -0.7339 1.2440 5 6 3.5728 -0.6191 1.2709 6 1 3.8552 0.4033 1.5222 7 7 4.1144 -1.5373 2.2815 8 6 4.1332 -0.9760 -0.0829 9 6 5.4773 -1.2985 -0.1826 10 6 6.0281 -1.6260 -1.4044 11 6 5.2329 -1.6317 -2.5437 12 8 5.7710 -1.9529 -3.7478 13 6 7.1050 -2.1441 -3.7907 14 1 7.6835 -2.1206 -2.8790 15 6 7.7342 -2.3710 -5.0053 16 7 7.0296 -2.3992 -6.1159 17 14 9.5824 -2.6352 -5.0648 18 1 10.1383 -2.5556 -3.6900 19 1 9.8729 -3.9735 -5.6389 20 1 10.2053 -1.5871 -5.9124 21 6 3.8882 -1.3100 -2.4470 22 6 3.3351 -0.9827 -1.2143 23 8 2.0111 -0.6833 -1.1582 24 1 -0.3633 0.5054 0.8948 25 1 -0.3633 0.5222 -0.8850 26 1 -0.3632 -1.0276 -0.0097 27 1 3.1360 1.4359 -0.0097 28 1 1.6770 1.9586 -0.8851 29 1 1.6929 1.9529 0.8948 30 1 1.7582 -1.7840 1.1974 31 1 1.6281 -0.2768 2.1406 32 1 5.1208 -1.4780 2.3218 33 1 3.7054 -1.3606 3.1868 34 1 6.0975 -1.2939 0.7016 35 1 7.0761 -1.8768 -1.4753 36 1 7.4698 -2.5575 -6.9656 37 1 3.2695 -1.3092 -3.3322 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043460129.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:14 Heat of formation + Delta-G solvation = -43.559608 kcal Electronic energy + Delta-G solvation = -20046.447568 eV Core-core repulsion = 16982.477959 eV Total energy + Delta-G solvation = -3063.969609 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.59505 -38.46048 -36.15704 -35.38281 -32.94868 -32.15571 -29.54543 -29.11570 -27.44726 -27.20693 -25.37635 -22.67906 -22.09480 -21.39943 -19.08282 -17.82108 -17.33683 -16.13301 -15.80773 -15.57140 -14.97006 -14.69517 -14.31783 -14.08358 -13.96204 -13.57702 -13.25938 -12.91866 -12.81854 -12.58574 -12.21168 -12.01492 -11.98550 -11.77664 -11.60416 -11.16509 -11.12457 -10.83246 -10.49043 -10.42340 -10.31121 -10.01784 -9.32007 -8.84583 -8.59819 -7.70030 -7.10039 -6.44176 -4.03360 2.24402 2.28763 3.13261 3.14096 3.20243 3.51687 4.00271 4.34418 4.62131 4.72865 4.86876 4.93199 5.11751 5.17748 5.22380 5.33861 5.48259 5.50247 5.58240 5.67433 5.72254 5.75971 5.85834 6.01448 6.10768 6.19488 6.27030 6.30543 6.39048 6.89072 6.96683 7.05876 7.17768 7.35655 7.37681 7.50031 7.57790 8.01192 8.13552 9.01209 9.70980 10.73843 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.033526 B = 0.004921 C = 0.004457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.981242 B = 5688.746595 C = 6280.769252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.117 3.883 3 C -0.176 4.176 4 C -0.139 4.139 5 C 0.153 3.847 6 H 0.035 0.965 7 N -0.841 5.841 8 C -0.243 4.243 9 C -0.032 4.032 10 C -0.256 4.256 11 C 0.184 3.816 12 O -0.173 6.173 13 C -0.391 4.391 14 H 0.094 0.906 15 C 0.039 3.961 16 N -0.861 5.861 17 Si 0.942 3.058 18 H -0.267 1.267 19 H -0.276 1.276 20 H -0.276 1.276 21 C -0.226 4.226 22 C 0.180 3.820 23 O -0.311 6.311 24 H 0.072 0.928 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.342 0.658 33 H 0.334 0.666 34 H 0.106 0.894 35 H 0.128 0.872 36 H 0.270 0.730 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.527 5.750 14.651 17.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.078 3.922 3 C -0.233 4.233 4 C -0.177 4.177 5 C 0.042 3.958 6 H 0.053 0.947 7 N -0.372 5.372 8 C -0.245 4.245 9 C -0.051 4.051 10 C -0.275 4.275 11 C 0.130 3.870 12 O -0.076 6.076 13 C -0.468 4.468 14 H 0.111 0.889 15 C -0.165 4.165 16 N -0.496 5.496 17 Si 0.767 3.233 18 H -0.191 1.191 19 H -0.201 1.201 20 H -0.201 1.201 21 C -0.246 4.246 22 C 0.135 3.865 23 O -0.226 6.226 24 H 0.091 0.909 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.102 0.898 31 H 0.089 0.911 32 H 0.156 0.844 33 H 0.146 0.854 34 H 0.124 0.876 35 H 0.146 0.854 36 H 0.080 0.920 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -8.040 5.067 13.589 16.582 hybrid contribution 1.489 0.726 0.671 1.788 sum -6.551 5.794 14.259 16.727 Atomic orbital electron populations 1.21754 0.91851 1.03156 1.02622 1.21714 0.94654 0.91301 0.84535 1.22432 1.02781 0.95659 1.02471 1.22251 0.95533 1.02298 0.97628 1.19837 0.93181 0.92723 0.90023 0.94711 1.58727 1.11044 1.58008 1.09380 1.19018 0.95008 1.17770 0.92728 1.20291 0.93143 0.95475 0.96193 1.21049 1.01259 1.12816 0.92385 1.18888 0.91453 0.90285 0.86416 1.83970 1.24380 1.74326 1.24927 1.21399 0.79698 1.50595 0.95081 0.88891 1.25305 1.00449 0.96662 0.94111 1.70057 1.36083 1.45268 0.98174 0.85630 0.80549 0.78305 0.78834 1.19085 1.20129 1.20149 1.19366 0.93737 1.15671 0.95860 1.17995 0.81501 0.94591 0.92400 1.85984 1.21830 1.72834 1.41949 0.90878 0.91440 0.91540 0.91299 0.91575 0.91600 0.89786 0.91070 0.84393 0.85373 0.87609 0.85385 0.92043 0.85783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 8.88 37.16 0.33 -1.09 16 2 C 0.12 1.56 1.13 -90.41 -0.10 1.46 16 3 C -0.18 -2.15 8.14 37.16 0.30 -1.84 16 4 C -0.14 -1.76 4.63 -26.49 -0.12 -1.88 16 5 C 0.15 2.14 2.76 -68.79 -0.19 1.95 16 6 H 0.04 0.46 7.00 -51.93 -0.36 0.10 16 7 N -0.84 -10.39 9.08 -5.59 -0.05 -10.44 16 8 C -0.24 -4.44 5.00 -104.36 -0.52 -4.96 16 9 C -0.03 -0.61 9.23 -39.55 -0.36 -0.97 16 10 C -0.26 -5.69 9.17 -39.42 -0.36 -6.05 16 11 C 0.18 4.61 6.64 -39.19 -0.26 4.35 16 12 O -0.17 -5.04 9.76 0.06 0.00 -5.04 16 13 C -0.39 -11.04 9.49 30.89 0.29 -10.74 16 14 H 0.09 2.42 5.21 -52.49 -0.27 2.15 16 15 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 16 N -0.86 -25.45 13.67 55.48 0.76 -24.69 16 17 Si 0.94 20.59 29.55 -169.99 -5.02 15.57 16 18 H -0.27 -5.57 7.11 56.52 0.40 -5.16 16 19 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 20 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 21 C -0.23 -5.22 9.88 -39.16 -0.39 -5.61 16 22 C 0.18 3.63 6.01 -39.21 -0.24 3.39 16 23 O -0.31 -5.60 9.67 -19.31 -0.19 -5.78 16 24 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.07 0.96 5.88 -51.93 -0.31 0.65 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.34 3.95 7.31 -39.29 -0.29 3.67 16 33 H 0.33 3.19 8.99 -39.29 -0.35 2.84 16 34 H 0.11 1.66 6.61 -52.48 -0.35 1.31 16 35 H 0.13 2.82 5.65 -52.49 -0.30 2.52 16 36 H 0.27 7.27 8.31 -40.82 -0.34 6.94 16 37 H 0.12 2.85 8.06 -52.48 -0.42 2.43 16 LS Contribution 299.51 15.07 4.51 4.51 Total: -1.00 -31.68 299.51 -6.45 -38.13 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -4.74 Total: 8.74 kcal Atomic # 6 Polarization: -19.29 SS G_CDS: -1.72 Total: -21.00 kcal Atomic # 7 Polarization: -35.84 SS G_CDS: 0.71 Total: -35.13 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: -0.19 Total: -10.82 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -31.68 -6.45 -38.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043460129.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.434 kcal (2) G-P(sol) polarization free energy of solvation -31.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds