Wall clock time and date at job start Mon Mar 30 2020 06:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.71097 * 2 1 4 4 C 1.53402 * 109.68651 * 120.53817 * 2 1 3 5 5 C 1.53059 * 108.31390 * 184.44339 * 4 2 1 6 6 H 1.09001 * 109.43294 * 71.84140 * 5 4 2 7 7 N 1.46894 * 109.43643 * 191.70845 * 5 4 2 8 8 C 1.50800 * 109.69166 * 311.77420 * 5 4 2 9 9 C 1.38590 * 118.69295 * 197.77550 * 8 5 4 10 10 C 1.37956 * 120.40989 * 180.22583 * 9 8 5 11 11 C 1.38940 * 119.91385 * 0.07760 * 10 9 8 12 12 O 1.35746 * 120.09608 * 179.97438 * 11 10 9 13 13 C 1.34829 * 117.00170 * 354.44571 * 12 11 10 14 14 H 1.07999 * 120.00258 * 5.05164 * 13 12 11 15 15 C 1.38659 * 120.00177 * 185.04946 * 13 12 11 16 16 N 1.31555 * 119.99452 * 0.02562 * 15 13 12 17 17 Si 1.86791 * 120.00060 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.47208 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47241 * 120.00106 * 17 15 13 20 20 H 1.48493 * 109.47651 * 240.00428 * 17 15 13 21 21 C 1.38603 * 119.80856 * 359.90008 * 11 10 9 22 22 C 1.38460 * 121.36900 * 17.94491 * 8 5 4 23 23 O 1.35862 * 121.79761 * 359.28581 * 22 8 5 24 24 H 1.08998 * 109.46725 * 299.45776 * 1 2 3 25 25 H 1.08993 * 109.47030 * 59.45674 * 1 2 3 26 26 H 1.08992 * 109.46712 * 179.46154 * 1 2 3 27 27 H 1.09001 * 109.47443 * 180.54254 * 3 2 1 28 28 H 1.09007 * 109.47160 * 300.54222 * 3 2 1 29 29 H 1.09003 * 109.47473 * 60.54370 * 3 2 1 30 30 H 1.09002 * 109.69208 * 64.73762 * 4 2 1 31 31 H 1.08998 * 109.69625 * 304.15320 * 4 2 1 32 32 H 1.00898 * 111.00605 * 180.22640 * 7 5 4 33 33 H 1.00899 * 110.99983 * 304.17631 * 7 5 4 34 34 H 1.08005 * 119.79656 * 0.25206 * 9 8 5 35 35 H 1.07998 * 120.04480 * 180.02562 * 10 9 8 36 36 H 0.97000 * 119.99365 * 179.97438 * 16 15 13 37 37 H 1.08003 * 119.91835 * 179.70226 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0461 1.4404 0.0000 4 6 2.0468 -0.7339 1.2440 5 6 3.5728 -0.6191 1.2709 6 1 3.8552 0.4033 1.5222 7 7 4.1144 -1.5373 2.2815 8 6 4.1332 -0.9760 -0.0829 9 6 5.4773 -1.2985 -0.1826 10 6 6.0281 -1.6260 -1.4044 11 6 5.2329 -1.6317 -2.5437 12 8 5.7710 -1.9529 -3.7478 13 6 7.1050 -2.1441 -3.7907 14 1 7.6835 -2.1206 -2.8790 15 6 7.7342 -2.3710 -5.0053 16 7 7.0296 -2.3992 -6.1159 17 14 9.5824 -2.6352 -5.0648 18 1 10.1383 -2.5556 -3.6900 19 1 9.8729 -3.9735 -5.6389 20 1 10.2053 -1.5871 -5.9124 21 6 3.8882 -1.3100 -2.4470 22 6 3.3351 -0.9827 -1.2143 23 8 2.0111 -0.6833 -1.1582 24 1 -0.3633 0.5054 0.8948 25 1 -0.3633 0.5222 -0.8850 26 1 -0.3632 -1.0276 -0.0097 27 1 3.1360 1.4359 -0.0097 28 1 1.6770 1.9586 -0.8851 29 1 1.6929 1.9529 0.8948 30 1 1.7582 -1.7840 1.1974 31 1 1.6281 -0.2768 2.1406 32 1 5.1208 -1.4780 2.3218 33 1 3.7054 -1.3606 3.1868 34 1 6.0975 -1.2939 0.7016 35 1 7.0761 -1.8768 -1.4753 36 1 7.4698 -2.5575 -6.9656 37 1 3.2695 -1.3092 -3.3322 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043460129.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:13 Heat of formation + Delta-G solvation = -66.577903 kcal Electronic energy + Delta-G solvation = -20047.445717 eV Core-core repulsion = 16982.477959 eV Total energy + Delta-G solvation = -3064.967757 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.98346 -40.25046 -37.71196 -36.68192 -34.43562 -33.87810 -31.21094 -30.46484 -28.53834 -28.26656 -27.38618 -24.15529 -23.59647 -22.75797 -20.75853 -19.27211 -19.08610 -17.67779 -17.13712 -16.90089 -16.25318 -16.10085 -15.94501 -15.55039 -15.51178 -15.36479 -14.65367 -14.21646 -14.04956 -13.93834 -13.55877 -13.44100 -13.04795 -13.02325 -12.88166 -12.78282 -12.69179 -12.12554 -12.08580 -11.78999 -11.61860 -11.40633 -11.11532 -10.78511 -9.63463 -9.40990 -8.79037 -8.48188 -6.17585 0.54311 0.61560 1.35497 1.44440 1.54807 2.08598 2.30551 2.74906 3.10715 3.49590 3.55711 3.72856 3.79077 3.84431 3.94095 4.19644 4.24119 4.31381 4.44926 4.52260 4.69463 4.70151 4.77196 4.85056 4.87847 4.90975 5.05129 5.10380 5.18756 5.21810 5.33476 5.42936 5.56116 5.65709 5.90532 6.01109 6.25447 6.64749 6.68558 6.95824 7.74824 8.75425 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.033526 B = 0.004921 C = 0.004457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.981242 B = 5688.746595 C = 6280.769252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.100 3.900 3 C -0.174 4.174 4 C -0.134 4.134 5 C 0.154 3.846 6 H 0.057 0.943 7 N -0.847 5.847 8 C -0.226 4.226 9 C -0.025 4.025 10 C -0.267 4.267 11 C 0.150 3.850 12 O -0.228 6.228 13 C -0.415 4.415 14 H 0.106 0.894 15 C -0.024 4.024 16 N -0.921 5.921 17 Si 1.023 2.977 18 H -0.249 1.249 19 H -0.268 1.268 20 H -0.268 1.268 21 C -0.252 4.252 22 C 0.184 3.816 23 O -0.329 6.329 24 H 0.110 0.890 25 H 0.064 0.936 26 H 0.061 0.939 27 H 0.049 0.951 28 H 0.059 0.941 29 H 0.104 0.896 30 H 0.068 0.932 31 H 0.114 0.886 32 H 0.348 0.652 33 H 0.355 0.645 34 H 0.148 0.852 35 H 0.126 0.874 36 H 0.273 0.727 37 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.723 6.853 18.878 21.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.063 3.937 3 C -0.231 4.231 4 C -0.172 4.172 5 C 0.043 3.957 6 H 0.075 0.925 7 N -0.381 5.381 8 C -0.228 4.228 9 C -0.043 4.043 10 C -0.286 4.286 11 C 0.099 3.901 12 O -0.134 6.134 13 C -0.491 4.491 14 H 0.123 0.877 15 C -0.221 4.221 16 N -0.559 5.559 17 Si 0.842 3.158 18 H -0.172 1.172 19 H -0.193 1.193 20 H -0.193 1.193 21 C -0.272 4.272 22 C 0.138 3.862 23 O -0.244 6.244 24 H 0.128 0.872 25 H 0.083 0.917 26 H 0.080 0.920 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.122 0.878 30 H 0.087 0.913 31 H 0.132 0.868 32 H 0.163 0.837 33 H 0.170 0.830 34 H 0.166 0.834 35 H 0.144 0.856 36 H 0.082 0.918 37 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -8.282 6.188 17.891 20.664 hybrid contribution 1.244 0.490 -0.365 1.386 sum -7.038 6.679 17.526 20.033 Atomic orbital electron populations 1.21819 0.89417 1.03456 1.04349 1.22294 0.96488 0.91654 0.83288 1.22435 1.01449 0.95017 1.04165 1.22257 0.94448 1.01672 0.98802 1.19883 0.94109 0.94032 0.87683 0.92503 1.58614 1.11688 1.57529 1.10246 1.19646 0.94531 1.14035 0.94578 1.20727 0.93936 0.93493 0.96152 1.21159 1.01042 1.13555 0.92869 1.19331 0.92504 0.91741 0.86501 1.83937 1.25079 1.77215 1.27218 1.21940 0.79966 1.51063 0.96087 0.87681 1.26675 1.06219 0.95942 0.93254 1.70210 1.38707 1.47940 0.99067 0.84473 0.73175 0.78450 0.79720 1.17170 1.19341 1.19288 1.19507 0.93387 1.17224 0.97058 1.18025 0.82851 0.93500 0.91795 1.85983 1.20322 1.73168 1.44946 0.87176 0.91738 0.91958 0.93225 0.92180 0.87774 0.91350 0.86770 0.83725 0.82985 0.83440 0.85612 0.91772 0.87615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.32 8.88 71.98 0.64 -1.68 16 2 C 0.10 2.38 1.13 -10.66 -0.01 2.36 16 3 C -0.17 -3.64 8.14 71.98 0.59 -3.05 16 4 C -0.13 -2.79 4.63 30.75 0.14 -2.65 16 5 C 0.15 3.65 2.76 44.22 0.12 3.77 16 6 H 0.06 1.19 7.00 -2.39 -0.02 1.17 16 7 N -0.85 -16.91 9.08 -171.59 -1.56 -18.47 16 8 C -0.23 -7.80 5.00 -19.70 -0.10 -7.90 16 9 C -0.02 -0.89 9.23 22.29 0.21 -0.68 16 10 C -0.27 -12.11 9.17 22.37 0.21 -11.90 16 11 C 0.15 8.02 6.64 22.53 0.15 8.17 16 12 O -0.23 -14.36 9.76 -22.68 -0.22 -14.58 16 13 C -0.41 -24.69 9.49 67.92 0.64 -24.05 16 14 H 0.11 5.70 5.21 -2.91 -0.02 5.68 16 15 C -0.02 -1.36 5.49 84.83 0.47 -0.89 16 16 N -0.92 -57.74 13.67 21.61 0.30 -57.44 16 17 Si 1.02 43.30 29.55 68.60 2.03 45.33 16 18 H -0.25 -9.62 7.11 99.48 0.71 -8.91 16 19 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 20 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 21 C -0.25 -12.36 9.88 22.54 0.22 -12.14 16 22 C 0.18 7.46 6.01 22.51 0.14 7.59 16 23 O -0.33 -11.69 9.67 -92.00 -0.89 -12.58 16 24 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.05 1.23 5.88 -2.39 -0.01 1.22 16 28 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 29 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.35 6.35 7.31 -89.70 -0.66 5.69 16 33 H 0.36 4.85 8.99 -89.69 -0.81 4.05 16 34 H 0.15 4.04 6.61 -2.91 -0.02 4.02 16 35 H 0.13 5.65 5.65 -2.91 -0.02 5.64 16 36 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 37 H 0.11 5.38 8.06 -2.91 -0.02 5.36 16 Total: -1.00 -75.94 299.51 2.71 -73.23 By element: Atomic # 1 Polarization: 27.92 SS G_CDS: -0.35 Total: 27.57 kcal Atomic # 6 Polarization: -46.46 SS G_CDS: 3.41 Total: -43.05 kcal Atomic # 7 Polarization: -74.65 SS G_CDS: -1.26 Total: -75.92 kcal Atomic # 8 Polarization: -26.04 SS G_CDS: -1.11 Total: -27.16 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -75.94 2.71 -73.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043460129.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.650 kcal (2) G-P(sol) polarization free energy of solvation -75.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds