Wall clock time and date at job start Mon Mar 30 2020 07:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46506 * 119.99936 * 2 1 4 4 C 1.50703 * 109.46877 * 90.00092 * 3 2 1 5 5 H 1.08005 * 119.99817 * 0.02562 * 4 3 2 6 6 C 1.37871 * 120.00081 * 179.97438 * 4 3 2 7 7 N 1.31520 * 119.99848 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 120.00321 * 179.97438 * 6 4 3 9 9 H 1.48504 * 109.46938 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47198 * 120.00527 * 8 6 4 11 11 H 1.48498 * 109.47360 * 240.00281 * 8 6 4 12 12 C 1.39675 * 120.00179 * 180.27709 * 2 1 3 13 13 C 1.38909 * 120.07843 * 179.44733 * 12 2 1 14 14 C 1.38098 * 119.92379 * 179.77115 * 13 12 2 15 15 C 1.38282 * 120.07766 * 0.50681 * 14 13 12 16 16 C 1.50701 * 119.92740 * 179.72386 * 15 14 13 17 17 O 1.43752 * 109.62896 * 118.92972 * 16 15 14 18 18 C 1.44593 * 104.91723 * 215.70999 * 17 16 15 19 19 C 1.54913 * 101.63429 * 36.26702 * 18 17 16 20 20 O 1.43367 * 109.63015 * 359.71475 * 16 15 14 21 21 C 1.38290 * 120.14765 * 359.74672 * 15 14 13 22 22 C 1.38100 * 120.07606 * 0.02562 * 21 15 14 23 23 H 1.09003 * 109.47269 * 89.99349 * 1 2 3 24 24 H 1.08994 * 109.47173 * 210.00167 * 1 2 3 25 25 H 1.09005 * 109.47077 * 330.00338 * 1 2 3 26 26 H 1.09000 * 109.46803 * 209.99571 * 3 2 1 27 27 H 1.09000 * 109.47214 * 330.00364 * 3 2 1 28 28 H 0.96998 * 119.99944 * 179.97438 * 7 6 4 29 29 H 1.08002 * 120.03229 * 0.02562 * 13 12 2 30 30 H 1.08001 * 119.96359 * 180.25108 * 14 13 12 31 31 H 1.08996 * 109.62882 * 239.32098 * 16 15 14 32 32 H 1.09000 * 111.08502 * 278.15920 * 18 17 16 33 33 H 1.09000 * 110.97737 * 154.33506 * 18 17 16 34 34 H 1.09005 * 110.69531 * 205.95535 * 19 18 17 35 35 H 1.09004 * 110.84264 * 82.82380 * 19 18 17 36 36 H 1.08005 * 119.96069 * 180.02562 * 21 15 14 37 37 H 1.07996 * 120.04178 * 179.97438 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7038 1.4209 5 1 2.0981 1.0957 2.2417 6 6 3.1269 2.8774 1.6729 7 7 3.5542 3.6176 0.6732 8 14 3.4376 3.4170 3.4340 9 1 2.8596 2.4169 4.3674 10 1 4.9001 3.5247 3.6680 11 1 2.8005 4.7380 3.6667 12 6 2.1634 -1.2096 -0.0058 13 6 3.5524 -1.2114 -0.0175 14 6 4.2398 -2.4092 -0.0184 15 6 3.5468 -3.6059 -0.0185 16 6 4.3003 -4.9110 -0.0258 17 8 3.9803 -5.6600 1.1587 18 6 5.2098 -6.3305 1.5186 19 6 6.2688 -5.2646 1.1417 20 8 5.7105 -4.6529 -0.0387 21 6 2.1639 -3.6077 -0.0122 22 6 1.4703 -2.4135 -0.0065 23 1 -0.3634 0.0001 -1.0277 24 1 -0.3633 -0.8899 0.5138 25 1 -0.3633 0.8901 0.5138 26 1 3.1499 1.1384 -0.5138 27 1 1.6084 2.0285 -0.5138 28 1 4.0310 4.4435 0.8505 29 1 4.0942 -0.2771 -0.0215 30 1 5.3198 -2.4114 -0.0233 31 1 4.0254 -5.4875 -0.9091 32 1 5.3462 -7.2400 0.9335 33 1 5.2375 -6.5479 2.5863 34 1 7.2257 -5.7352 0.9159 35 1 6.3810 -4.5304 1.9396 36 1 1.6258 -4.5441 -0.0118 37 1 0.3904 -2.4156 -0.0020 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044229367.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:34 Heat of formation + Delta-G solvation = -50.681228 kcal Electronic energy + Delta-G solvation = -19592.444686 eV Core-core repulsion = 16528.166260 eV Total energy + Delta-G solvation = -3064.278426 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.40853 -38.68314 -35.61417 -34.97739 -32.73897 -30.98985 -30.41502 -28.72881 -27.78119 -25.57810 -23.96194 -23.28592 -22.26300 -21.36337 -19.64013 -17.38337 -17.11110 -16.52971 -16.26442 -15.71965 -15.04750 -14.86561 -14.27863 -14.22552 -13.71430 -13.51182 -13.47721 -12.94529 -12.69977 -12.58782 -12.15614 -11.98226 -11.64367 -11.50058 -11.26249 -11.21537 -10.90844 -10.69370 -10.27516 -10.25034 -9.92173 -9.76320 -9.57087 -8.84483 -8.50956 -8.26374 -6.49542 -6.02772 -4.17532 2.13201 2.15208 3.25377 3.33463 3.38657 3.48959 4.05330 4.14728 4.41005 4.50605 4.56364 4.78839 4.98389 5.21525 5.26421 5.31439 5.43218 5.52628 5.60894 5.64130 5.83142 5.86742 6.04099 6.09715 6.26924 6.35291 6.43583 6.65859 6.91200 7.00430 7.01787 7.22008 7.29008 7.38673 7.58452 7.81108 8.15016 8.25604 8.46867 8.91683 9.49376 10.95557 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.021465 B = 0.005046 C = 0.004446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.108423 B = 5547.638802 C = 6295.783294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.613 5.613 3 C 0.247 3.753 4 C -0.531 4.531 5 H 0.060 0.940 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.283 1.283 12 C 0.248 3.752 13 C -0.193 4.193 14 C -0.042 4.042 15 C -0.205 4.205 16 C 0.290 3.710 17 O -0.374 6.374 18 C 0.015 3.985 19 C 0.020 3.980 20 O -0.380 6.380 21 C -0.046 4.046 22 C -0.225 4.225 23 H 0.036 0.964 24 H 0.055 0.945 25 H 0.068 0.932 26 H 0.037 0.963 27 H 0.031 0.969 28 H 0.263 0.737 29 H 0.134 0.866 30 H 0.120 0.880 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.076 0.924 36 H 0.111 0.889 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.318 -16.714 -0.831 16.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.318 5.318 3 C 0.128 3.872 4 C -0.570 4.570 5 H 0.078 0.922 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.209 1.209 12 C 0.140 3.860 13 C -0.215 4.215 14 C -0.061 4.061 15 C -0.208 4.208 16 C 0.196 3.804 17 O -0.294 6.294 18 C -0.061 4.061 19 C -0.056 4.056 20 O -0.300 6.300 21 C -0.065 4.065 22 C -0.249 4.249 23 H 0.055 0.945 24 H 0.074 0.926 25 H 0.086 0.914 26 H 0.055 0.945 27 H 0.049 0.951 28 H 0.073 0.927 29 H 0.151 0.849 30 H 0.138 0.862 31 H 0.103 0.897 32 H 0.090 0.910 33 H 0.123 0.877 34 H 0.115 0.885 35 H 0.095 0.905 36 H 0.129 0.871 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 1.177 -16.188 -0.931 16.257 hybrid contribution 0.255 0.366 1.111 1.197 sum 1.432 -15.821 0.180 15.887 Atomic orbital electron populations 1.21491 0.81412 1.02007 0.99763 1.47141 1.04470 1.04637 1.75599 1.19320 0.92150 0.78704 0.97072 1.21615 1.36310 1.06401 0.92641 0.92192 1.24960 0.95397 0.96285 0.97420 1.69943 1.38395 1.14358 1.30693 0.86465 0.78049 0.78443 0.84664 1.19738 1.20834 1.20933 1.18019 0.91570 0.86023 0.90368 1.20891 0.92623 0.98731 1.09302 1.20618 0.99406 0.90879 0.95205 1.19394 0.93650 0.93241 1.14511 1.22510 0.79829 0.89959 0.88086 1.89280 1.31716 1.63049 1.45388 1.24303 0.83442 0.95884 1.02493 1.24162 0.97706 0.95037 0.88722 1.88872 1.20590 1.77711 1.42875 1.20366 0.92802 0.96891 0.96490 1.20517 0.99078 0.91196 1.14060 0.94517 0.92614 0.91373 0.94518 0.95110 0.92694 0.84866 0.86195 0.89741 0.90957 0.87673 0.88536 0.90548 0.87095 0.86613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.73 10.19 59.85 0.61 2.34 16 2 N -0.61 -13.37 2.99 -180.99 -0.54 -13.91 16 3 C 0.25 6.27 4.93 -5.19 -0.03 6.24 16 4 C -0.53 -14.62 9.39 -34.44 -0.32 -14.95 16 5 H 0.06 1.70 7.81 -52.48 -0.41 1.29 16 6 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 7 N -0.89 -25.77 13.29 55.43 0.74 -25.03 16 8 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 9 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 C 0.25 5.19 6.55 -83.78 -0.55 4.64 16 13 C -0.19 -4.08 9.21 -39.38 -0.36 -4.44 16 14 C -0.04 -0.79 9.37 -39.62 -0.37 -1.16 16 15 C -0.20 -3.55 5.57 -104.59 -0.58 -4.13 16 16 C 0.29 4.26 4.31 36.01 0.16 4.41 16 17 O -0.37 -5.31 11.22 -59.05 -0.66 -5.97 16 18 C 0.02 0.15 7.95 38.17 0.30 0.45 16 19 C 0.02 0.21 8.07 38.17 0.31 0.52 16 20 O -0.38 -5.43 9.70 -59.05 -0.57 -6.00 16 21 C -0.05 -0.78 9.63 -39.61 -0.38 -1.17 16 22 C -0.23 -4.09 9.21 -39.38 -0.36 -4.46 16 23 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.06 0.88 6.20 -51.93 -0.32 0.56 16 25 H 0.07 1.23 8.07 -51.93 -0.42 0.81 16 26 H 0.04 0.98 6.17 -51.93 -0.32 0.66 16 27 H 0.03 0.81 8.07 -51.93 -0.42 0.40 16 28 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 29 H 0.13 3.06 6.13 -52.49 -0.32 2.74 16 30 H 0.12 2.13 7.00 -52.49 -0.37 1.76 16 31 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 37 H 0.12 1.87 6.14 -52.49 -0.32 1.55 16 LS Contribution 308.71 15.07 4.65 4.65 Total: -1.00 -30.68 308.71 -8.08 -38.77 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -5.00 Total: 1.15 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: -1.68 Total: -10.09 kcal Atomic # 7 Polarization: -39.13 SS G_CDS: 0.20 Total: -38.94 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: -1.24 Total: -11.97 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.68 -8.08 -38.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044229367.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.913 kcal (2) G-P(sol) polarization free energy of solvation -30.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds