Wall clock time and date at job start Mon Mar 30 2020 07:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46506 * 119.99936 * 2 1 4 4 C 1.50703 * 109.46877 * 90.00092 * 3 2 1 5 5 H 1.08005 * 119.99817 * 0.02562 * 4 3 2 6 6 C 1.37871 * 120.00081 * 179.97438 * 4 3 2 7 7 N 1.31520 * 119.99848 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 120.00321 * 179.97438 * 6 4 3 9 9 H 1.48504 * 109.46938 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47198 * 120.00527 * 8 6 4 11 11 H 1.48498 * 109.47360 * 240.00281 * 8 6 4 12 12 C 1.39675 * 120.00179 * 180.27709 * 2 1 3 13 13 C 1.38909 * 120.07843 * 179.44733 * 12 2 1 14 14 C 1.38098 * 119.92379 * 179.77115 * 13 12 2 15 15 C 1.38282 * 120.07766 * 0.50681 * 14 13 12 16 16 C 1.50701 * 119.92740 * 179.72386 * 15 14 13 17 17 O 1.43752 * 109.62896 * 118.92972 * 16 15 14 18 18 C 1.44593 * 104.91723 * 215.70999 * 17 16 15 19 19 C 1.54913 * 101.63429 * 36.26702 * 18 17 16 20 20 O 1.43367 * 109.63015 * 359.71475 * 16 15 14 21 21 C 1.38290 * 120.14765 * 359.74672 * 15 14 13 22 22 C 1.38100 * 120.07606 * 0.02562 * 21 15 14 23 23 H 1.09003 * 109.47269 * 89.99349 * 1 2 3 24 24 H 1.08994 * 109.47173 * 210.00167 * 1 2 3 25 25 H 1.09005 * 109.47077 * 330.00338 * 1 2 3 26 26 H 1.09000 * 109.46803 * 209.99571 * 3 2 1 27 27 H 1.09000 * 109.47214 * 330.00364 * 3 2 1 28 28 H 0.96998 * 119.99944 * 179.97438 * 7 6 4 29 29 H 1.08002 * 120.03229 * 0.02562 * 13 12 2 30 30 H 1.08001 * 119.96359 * 180.25108 * 14 13 12 31 31 H 1.08996 * 109.62882 * 239.32098 * 16 15 14 32 32 H 1.09000 * 111.08502 * 278.15920 * 18 17 16 33 33 H 1.09000 * 110.97737 * 154.33506 * 18 17 16 34 34 H 1.09005 * 110.69531 * 205.95535 * 19 18 17 35 35 H 1.09004 * 110.84264 * 82.82380 * 19 18 17 36 36 H 1.08005 * 119.96069 * 180.02562 * 21 15 14 37 37 H 1.07996 * 120.04178 * 179.97438 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7038 1.4209 5 1 2.0981 1.0957 2.2417 6 6 3.1269 2.8774 1.6729 7 7 3.5542 3.6176 0.6732 8 14 3.4376 3.4170 3.4340 9 1 2.8596 2.4169 4.3674 10 1 4.9001 3.5247 3.6680 11 1 2.8005 4.7380 3.6667 12 6 2.1634 -1.2096 -0.0058 13 6 3.5524 -1.2114 -0.0175 14 6 4.2398 -2.4092 -0.0184 15 6 3.5468 -3.6059 -0.0185 16 6 4.3003 -4.9110 -0.0258 17 8 3.9803 -5.6600 1.1587 18 6 5.2098 -6.3305 1.5186 19 6 6.2688 -5.2646 1.1417 20 8 5.7105 -4.6529 -0.0387 21 6 2.1639 -3.6077 -0.0122 22 6 1.4703 -2.4135 -0.0065 23 1 -0.3634 0.0001 -1.0277 24 1 -0.3633 -0.8899 0.5138 25 1 -0.3633 0.8901 0.5138 26 1 3.1499 1.1384 -0.5138 27 1 1.6084 2.0285 -0.5138 28 1 4.0310 4.4435 0.8505 29 1 4.0942 -0.2771 -0.0215 30 1 5.3198 -2.4114 -0.0233 31 1 4.0254 -5.4875 -0.9091 32 1 5.3462 -7.2400 0.9335 33 1 5.2375 -6.5479 2.5863 34 1 7.2257 -5.7352 0.9159 35 1 6.3810 -4.5304 1.9396 36 1 1.6258 -4.5441 -0.0118 37 1 0.3904 -2.4156 -0.0020 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044229367.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:33 Heat of formation + Delta-G solvation = -69.207732 kcal Electronic energy + Delta-G solvation = -19593.248056 eV Core-core repulsion = 16528.166260 eV Total energy + Delta-G solvation = -3065.081795 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.45813 -40.13559 -37.20821 -35.98607 -34.79109 -32.20925 -31.93232 -29.99482 -29.51218 -27.07544 -25.57235 -24.17852 -23.80245 -22.85898 -21.14982 -18.65774 -18.59242 -18.15669 -17.52911 -16.82826 -16.77252 -16.15321 -15.85349 -15.50788 -15.35583 -14.67972 -14.62236 -14.39772 -14.19048 -13.92201 -13.67011 -13.33680 -13.20274 -13.03972 -12.85218 -12.65519 -12.56733 -12.36012 -12.15711 -11.73924 -11.48920 -11.11156 -10.74838 -10.65726 -10.41806 -9.74108 -8.39182 -7.87414 -6.38846 0.64756 0.70074 1.35283 1.36898 1.49258 2.32938 2.55242 2.59308 2.96622 3.05042 3.18086 3.74285 3.94718 4.05586 4.15468 4.19383 4.32291 4.40963 4.42437 4.61388 4.63708 4.70049 4.75026 4.82972 4.85569 4.98053 5.02558 5.04641 5.17835 5.27984 5.53170 5.59011 5.66820 5.75459 6.05252 6.10102 6.18408 6.46204 6.80208 6.87487 7.32977 8.82310 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.021465 B = 0.005046 C = 0.004446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.108423 B = 5547.638802 C = 6295.783294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.628 5.628 3 C 0.264 3.736 4 C -0.542 4.542 5 H 0.048 0.952 6 C 0.013 3.987 7 N -0.926 5.926 8 Si 0.962 3.038 9 H -0.271 1.271 10 H -0.277 1.277 11 H -0.273 1.273 12 C 0.221 3.779 13 C -0.220 4.220 14 C -0.047 4.047 15 C -0.201 4.201 16 C 0.292 3.708 17 O -0.394 6.394 18 C 0.015 3.985 19 C 0.012 3.988 20 O -0.400 6.400 21 C -0.042 4.042 22 C -0.218 4.218 23 H 0.055 0.945 24 H 0.079 0.921 25 H 0.058 0.942 26 H 0.011 0.989 27 H 0.012 0.988 28 H 0.268 0.732 29 H 0.099 0.901 30 H 0.123 0.877 31 H 0.106 0.894 32 H 0.098 0.902 33 H 0.126 0.874 34 H 0.127 0.873 35 H 0.067 0.933 36 H 0.145 0.855 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.954 -19.314 0.121 19.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.335 5.335 3 C 0.143 3.857 4 C -0.581 4.581 5 H 0.067 0.933 6 C -0.186 4.186 7 N -0.566 5.566 8 Si 0.787 3.213 9 H -0.196 1.196 10 H -0.203 1.203 11 H -0.198 1.198 12 C 0.116 3.884 13 C -0.242 4.242 14 C -0.066 4.066 15 C -0.204 4.204 16 C 0.198 3.802 17 O -0.315 6.315 18 C -0.061 4.061 19 C -0.064 4.064 20 O -0.322 6.322 21 C -0.061 4.061 22 C -0.240 4.240 23 H 0.074 0.926 24 H 0.098 0.902 25 H 0.077 0.923 26 H 0.029 0.971 27 H 0.030 0.970 28 H 0.077 0.923 29 H 0.117 0.883 30 H 0.140 0.860 31 H 0.123 0.877 32 H 0.116 0.884 33 H 0.144 0.856 34 H 0.145 0.855 35 H 0.085 0.915 36 H 0.163 0.837 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 0.809 -18.826 0.021 18.843 hybrid contribution 0.442 1.032 0.805 1.381 sum 1.251 -17.793 0.826 17.856 Atomic orbital electron populations 1.21648 0.79115 1.02714 1.01194 1.47017 1.05819 1.03629 1.77074 1.18821 0.91160 0.80208 0.95555 1.21794 1.36472 1.06542 0.93262 0.93324 1.25776 0.95013 0.96285 1.01534 1.70044 1.38968 1.14818 1.32768 0.85442 0.78043 0.78208 0.79584 1.19600 1.20280 1.19793 1.18267 0.91558 0.86700 0.91906 1.20774 0.93311 0.98337 1.11823 1.20670 0.99652 0.90911 0.95342 1.19838 0.94387 0.94047 1.12160 1.22513 0.79805 0.88698 0.89221 1.89233 1.33721 1.63376 1.45160 1.24599 0.81222 0.95993 1.04279 1.24432 0.99298 0.95185 0.87486 1.88860 1.20481 1.78461 1.44359 1.20756 0.92765 0.97719 0.94839 1.20796 1.00322 0.90318 1.12605 0.92635 0.90209 0.92308 0.97073 0.96956 0.92348 0.88260 0.85957 0.87661 0.88429 0.85624 0.85484 0.91463 0.83730 0.84170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.36 10.19 127.77 1.30 4.66 16 2 N -0.63 -28.09 2.99 -726.54 -2.17 -30.26 16 3 C 0.26 14.12 4.93 85.63 0.42 14.54 16 4 C -0.54 -30.95 9.39 25.60 0.24 -30.71 16 5 H 0.05 2.83 7.81 -2.91 -0.02 2.80 16 6 C 0.01 0.75 5.46 84.65 0.46 1.21 16 7 N -0.93 -54.88 13.29 21.45 0.28 -54.59 16 8 Si 0.96 44.61 29.54 68.60 2.03 46.64 16 9 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 10 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 11 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 12 C 0.22 9.40 6.55 38.22 0.25 9.65 16 13 C -0.22 -9.75 9.21 22.40 0.21 -9.54 16 14 C -0.05 -1.79 9.37 22.25 0.21 -1.58 16 15 C -0.20 -6.67 5.57 -19.84 -0.11 -6.78 16 16 C 0.29 7.84 4.31 71.24 0.31 8.15 16 17 O -0.39 -9.97 11.22 -126.21 -1.42 -11.39 16 18 C 0.01 0.24 7.95 72.64 0.58 0.81 16 19 C 0.01 0.22 8.07 72.64 0.59 0.80 16 20 O -0.40 -10.73 9.70 -126.21 -1.22 -11.95 16 21 C -0.04 -1.31 9.63 22.25 0.21 -1.10 16 22 C -0.22 -7.52 9.21 22.40 0.21 -7.31 16 23 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 24 H 0.08 2.36 6.20 -2.39 -0.01 2.35 16 25 H 0.06 2.13 8.07 -2.38 -0.02 2.11 16 26 H 0.01 0.65 6.17 -2.39 -0.01 0.64 16 27 H 0.01 0.69 8.07 -2.39 -0.02 0.67 16 28 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 29 H 0.10 4.99 6.13 -2.91 -0.02 4.97 16 30 H 0.12 4.48 7.00 -2.91 -0.02 4.46 16 31 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 32 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.13 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.13 1.54 8.14 -2.38 -0.02 1.52 16 35 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.14 3.55 8.06 -2.91 -0.02 3.53 16 37 H 0.14 4.08 6.14 -2.91 -0.02 4.06 16 Total: -1.00 -67.99 308.71 3.43 -64.56 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: 1.06 Total: 14.20 kcal Atomic # 6 Polarization: -22.07 SS G_CDS: 4.87 Total: -17.20 kcal Atomic # 7 Polarization: -82.97 SS G_CDS: -1.89 Total: -84.86 kcal Atomic # 8 Polarization: -20.70 SS G_CDS: -2.64 Total: -23.34 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -67.99 3.43 -64.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044229367.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.651 kcal (2) G-P(sol) polarization free energy of solvation -67.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds