Wall clock time and date at job start Mon Mar 30 2020 06:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47353 * 2 1 4 4 O 1.45205 * 109.47114 * 119.99755 * 2 1 3 5 5 C 1.34654 * 116.99761 * 89.99650 * 4 2 1 6 6 O 1.21508 * 119.99962 * 0.02562 * 5 4 2 7 7 N 1.34777 * 119.99712 * 180.02562 * 5 4 2 8 8 C 1.46498 * 119.99909 * 184.74874 * 7 5 4 9 9 C 1.50701 * 109.47470 * 270.00183 * 8 7 5 10 10 H 1.07998 * 119.99772 * 0.02562 * 9 8 7 11 11 C 1.37873 * 120.00191 * 179.97438 * 9 8 7 12 12 N 1.31512 * 120.00060 * 359.97438 * 11 9 8 13 13 Si 1.86806 * 119.99936 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47043 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.46924 * 119.99848 * 13 11 9 16 16 H 1.48495 * 109.46960 * 239.99962 * 13 11 9 17 17 C 1.39955 * 120.00042 * 4.75056 * 7 5 4 18 18 C 1.38858 * 120.06896 * 67.80202 * 17 7 5 19 19 C 1.38113 * 119.92957 * 179.97438 * 18 17 7 20 20 C 1.38278 * 120.07061 * 359.97438 * 19 18 17 21 21 C 1.38283 * 120.13873 * 0.02562 * 20 19 18 22 22 C 1.38117 * 120.06788 * 359.97438 * 21 20 19 23 23 H 1.09001 * 109.47203 * 300.00201 * 1 2 3 24 24 H 1.09001 * 109.47064 * 59.99944 * 1 2 3 25 25 H 1.09007 * 109.47411 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47203 * 239.99799 * 2 1 3 27 27 H 1.08999 * 109.47249 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47081 * 300.00045 * 3 2 1 29 29 H 1.09001 * 109.47130 * 59.99754 * 3 2 1 30 30 H 1.09004 * 109.46863 * 30.00322 * 8 7 5 31 31 H 1.08993 * 109.47295 * 149.99903 * 8 7 5 32 32 H 0.97002 * 119.99835 * 180.02562 * 12 11 9 33 33 H 1.08000 * 120.03557 * 359.70554 * 18 17 7 34 34 H 1.08004 * 119.96534 * 180.02562 * 19 18 17 35 35 H 1.07994 * 119.93450 * 179.97438 * 20 19 18 36 36 H 1.08003 * 119.96890 * 180.02562 * 21 20 19 37 37 H 1.08000 * 120.03444 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0140 -0.6845 1.1856 5 6 2.2177 -2.0117 1.0849 6 8 1.9974 -2.5822 0.0349 7 7 2.6658 -2.7073 2.1488 8 6 2.9865 -4.1301 2.0113 9 6 1.7594 -4.9527 2.3085 10 1 0.8330 -4.4645 2.5730 11 6 1.8189 -6.3286 2.2419 12 7 2.9465 -6.9231 1.9184 13 14 0.2975 -7.3482 2.6097 14 1 -0.8336 -6.4464 2.9450 15 1 -0.0535 -8.1612 1.4176 16 1 0.5705 -8.2476 3.7593 17 6 2.8247 -2.0703 3.3848 18 6 1.7120 -1.6260 4.0866 19 6 1.8721 -0.9983 5.3064 20 6 3.1388 -0.8126 5.8291 21 6 4.2489 -1.2540 5.1326 22 6 4.0954 -1.8824 3.9123 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9562 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 3.3205 -4.3305 0.9932 31 1 3.7788 -4.3933 2.7120 32 1 2.9883 -7.8910 1.8712 33 1 0.7227 -1.7672 3.6771 34 1 1.0071 -0.6528 5.8530 35 1 3.2615 -0.3211 6.7829 36 1 5.2369 -1.1079 5.5436 37 1 4.9628 -2.2266 3.3686 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044239992.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:59 Heat of formation + Delta-G solvation = -56.179073 kcal Electronic energy + Delta-G solvation = -20127.503845 eV Core-core repulsion = 17062.987014 eV Total energy + Delta-G solvation = -3064.516830 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.18392 -38.67696 -36.59527 -34.76260 -32.97873 -32.42848 -30.57929 -29.36060 -27.20295 -27.17751 -23.60568 -22.58665 -22.09894 -21.14005 -19.70230 -18.21583 -16.64910 -16.27632 -16.06367 -15.48309 -15.04613 -14.60324 -14.30266 -13.99323 -13.85772 -13.22392 -13.07788 -12.87178 -12.40606 -12.25445 -12.22386 -11.99654 -11.55894 -11.50256 -11.20027 -11.01611 -10.80490 -10.70710 -10.64379 -10.23698 -10.10809 -9.82631 -9.74507 -8.63512 -8.57546 -8.46432 -7.72659 -6.08647 -4.12867 1.67801 1.76187 2.81586 3.29316 3.36212 3.41194 3.54018 4.14243 4.39860 4.50897 4.95570 5.07807 5.25219 5.26405 5.28430 5.31433 5.42156 5.57204 5.66882 5.77780 5.78917 5.89543 5.91197 6.09951 6.13823 6.30217 6.35261 6.64555 6.80686 6.82021 6.87594 7.06840 7.23550 7.33859 7.44510 7.87072 8.13480 8.28968 8.85450 9.09130 9.51879 10.99871 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.014222 B = 0.007784 C = 0.005891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.249402 B = 3596.063864 C = 4751.577813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.097 3.903 3 C -0.146 4.146 4 O -0.368 6.368 5 C 0.646 3.354 6 O -0.558 6.558 7 N -0.541 5.541 8 C 0.262 3.738 9 C -0.526 4.526 10 H 0.060 0.940 11 C 0.063 3.937 12 N -0.894 5.894 13 Si 0.900 3.100 14 H -0.273 1.273 15 H -0.282 1.282 16 H -0.282 1.282 17 C 0.168 3.832 18 C -0.110 4.110 19 C -0.112 4.112 20 C -0.134 4.134 21 C -0.112 4.112 22 C -0.122 4.122 23 H 0.061 0.939 24 H 0.069 0.931 25 H 0.065 0.935 26 H 0.084 0.916 27 H 0.062 0.938 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.049 0.951 31 H 0.043 0.957 32 H 0.264 0.736 33 H 0.120 0.880 34 H 0.119 0.881 35 H 0.117 0.883 36 H 0.120 0.880 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.323 15.417 3.184 15.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.041 3.959 3 C -0.204 4.204 4 O -0.283 6.283 5 C 0.400 3.600 6 O -0.446 6.446 7 N -0.276 5.276 8 C 0.145 3.855 9 C -0.565 4.565 10 H 0.078 0.922 11 C -0.139 4.139 12 N -0.533 5.533 13 Si 0.728 3.272 14 H -0.197 1.197 15 H -0.208 1.208 16 H -0.209 1.209 17 C 0.077 3.923 18 C -0.129 4.129 19 C -0.131 4.131 20 C -0.152 4.152 21 C -0.131 4.131 22 C -0.142 4.142 23 H 0.080 0.920 24 H 0.088 0.912 25 H 0.084 0.916 26 H 0.102 0.898 27 H 0.081 0.919 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.138 0.862 34 H 0.137 0.863 35 H 0.135 0.865 36 H 0.138 0.862 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.330 15.068 2.730 15.317 hybrid contribution -0.873 -0.825 0.131 1.208 sum -1.203 14.243 2.861 14.577 Atomic orbital electron populations 1.22205 0.94868 1.03316 1.02264 1.22512 0.94164 0.92180 0.87073 1.21863 1.01972 0.93904 1.02625 1.86361 1.79977 1.21079 1.40886 1.18067 0.77378 0.80356 0.84185 1.90958 1.55676 1.69618 1.28312 1.44963 1.66235 1.11529 1.04905 1.19516 0.96816 0.69974 0.99162 1.21413 0.96648 0.91186 1.47246 0.92188 1.24899 0.96461 0.97583 0.94986 1.69933 1.25386 1.09890 1.48137 0.86401 0.82851 0.80039 0.77930 1.19746 1.20795 1.20851 1.17664 0.92838 0.94739 0.87085 1.21277 0.98300 0.98721 0.94628 1.20933 0.97211 0.99422 0.95514 1.21028 0.92729 1.01566 0.99903 1.20919 0.98595 0.98907 0.94669 1.21259 0.96508 0.99651 0.96797 0.91955 0.91195 0.91593 0.89773 0.91881 0.90687 0.91675 0.93277 0.93960 0.92640 0.86223 0.86264 0.86478 0.86164 0.85908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.29 9.55 37.16 0.35 -1.93 16 2 C 0.10 1.47 3.19 -26.74 -0.09 1.38 16 3 C -0.15 -1.64 9.57 37.15 0.36 -1.28 16 4 O -0.37 -6.96 8.91 -40.36 -0.36 -7.32 16 5 C 0.65 14.71 8.21 54.06 0.44 15.15 16 6 O -0.56 -14.35 15.23 -19.28 -0.29 -14.65 16 7 N -0.54 -12.48 2.51 -120.16 -0.30 -12.78 16 8 C 0.26 6.97 5.07 -5.19 -0.03 6.95 16 9 C -0.53 -15.14 9.39 -34.44 -0.32 -15.46 16 10 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 11 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 12 N -0.89 -26.51 13.29 55.43 0.74 -25.78 16 13 Si 0.90 22.07 29.54 -169.99 -5.02 17.04 16 14 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 15 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 17 C 0.17 3.35 4.75 -83.69 -0.40 2.95 16 18 C -0.11 -1.97 9.54 -39.40 -0.38 -2.35 16 19 C -0.11 -1.64 10.04 -39.61 -0.40 -2.04 16 20 C -0.13 -1.80 10.04 -39.55 -0.40 -2.19 16 21 C -0.11 -1.60 10.04 -39.61 -0.40 -2.00 16 22 C -0.12 -2.12 9.68 -39.40 -0.38 -2.50 16 23 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 24 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 26 H 0.08 1.38 7.16 -51.93 -0.37 1.01 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.05 1.43 7.49 -51.93 -0.39 1.04 16 31 H 0.04 1.14 7.86 -51.93 -0.41 0.73 16 32 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 33 H 0.12 2.20 8.06 -52.49 -0.42 1.78 16 34 H 0.12 1.41 8.06 -52.48 -0.42 0.99 16 35 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 36 H 0.12 1.36 8.06 -52.48 -0.42 0.94 16 37 H 0.12 2.05 8.06 -52.49 -0.42 1.63 16 LS Contribution 323.09 15.07 4.87 4.87 Total: -1.00 -32.44 323.09 -7.46 -39.90 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -5.36 Total: 0.32 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: -1.73 Total: -1.61 kcal Atomic # 7 Polarization: -38.99 SS G_CDS: 0.44 Total: -38.56 kcal Atomic # 8 Polarization: -21.31 SS G_CDS: -0.65 Total: -21.96 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.44 -7.46 -39.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044239992.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.278 kcal (2) G-P(sol) polarization free energy of solvation -32.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds