Wall clock time and date at job start Mon Mar 30 2020 06:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47353 * 2 1 4 4 O 1.45205 * 109.47114 * 119.99755 * 2 1 3 5 5 C 1.34654 * 116.99761 * 89.99650 * 4 2 1 6 6 O 1.21508 * 119.99962 * 0.02562 * 5 4 2 7 7 N 1.34777 * 119.99712 * 180.02562 * 5 4 2 8 8 C 1.46498 * 119.99909 * 184.74874 * 7 5 4 9 9 C 1.50701 * 109.47470 * 270.00183 * 8 7 5 10 10 H 1.07998 * 119.99772 * 0.02562 * 9 8 7 11 11 C 1.37873 * 120.00191 * 179.97438 * 9 8 7 12 12 N 1.31512 * 120.00060 * 359.97438 * 11 9 8 13 13 Si 1.86806 * 119.99936 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47043 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.46924 * 119.99848 * 13 11 9 16 16 H 1.48495 * 109.46960 * 239.99962 * 13 11 9 17 17 C 1.39955 * 120.00042 * 4.75056 * 7 5 4 18 18 C 1.38858 * 120.06896 * 67.80202 * 17 7 5 19 19 C 1.38113 * 119.92957 * 179.97438 * 18 17 7 20 20 C 1.38278 * 120.07061 * 359.97438 * 19 18 17 21 21 C 1.38283 * 120.13873 * 0.02562 * 20 19 18 22 22 C 1.38117 * 120.06788 * 359.97438 * 21 20 19 23 23 H 1.09001 * 109.47203 * 300.00201 * 1 2 3 24 24 H 1.09001 * 109.47064 * 59.99944 * 1 2 3 25 25 H 1.09007 * 109.47411 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47203 * 239.99799 * 2 1 3 27 27 H 1.08999 * 109.47249 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47081 * 300.00045 * 3 2 1 29 29 H 1.09001 * 109.47130 * 59.99754 * 3 2 1 30 30 H 1.09004 * 109.46863 * 30.00322 * 8 7 5 31 31 H 1.08993 * 109.47295 * 149.99903 * 8 7 5 32 32 H 0.97002 * 119.99835 * 180.02562 * 12 11 9 33 33 H 1.08000 * 120.03557 * 359.70554 * 18 17 7 34 34 H 1.08004 * 119.96534 * 180.02562 * 19 18 17 35 35 H 1.07994 * 119.93450 * 179.97438 * 20 19 18 36 36 H 1.08003 * 119.96890 * 180.02562 * 21 20 19 37 37 H 1.08000 * 120.03444 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0140 -0.6845 1.1856 5 6 2.2177 -2.0117 1.0849 6 8 1.9974 -2.5822 0.0349 7 7 2.6658 -2.7073 2.1488 8 6 2.9865 -4.1301 2.0113 9 6 1.7594 -4.9527 2.3085 10 1 0.8330 -4.4645 2.5730 11 6 1.8189 -6.3286 2.2419 12 7 2.9465 -6.9231 1.9184 13 14 0.2975 -7.3482 2.6097 14 1 -0.8336 -6.4464 2.9450 15 1 -0.0535 -8.1612 1.4176 16 1 0.5705 -8.2476 3.7593 17 6 2.8247 -2.0703 3.3848 18 6 1.7120 -1.6260 4.0866 19 6 1.8721 -0.9983 5.3064 20 6 3.1388 -0.8126 5.8291 21 6 4.2489 -1.2540 5.1326 22 6 4.0954 -1.8824 3.9123 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9562 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 3.3205 -4.3305 0.9932 31 1 3.7788 -4.3933 2.7120 32 1 2.9883 -7.8910 1.8712 33 1 0.7227 -1.7672 3.6771 34 1 1.0071 -0.6528 5.8530 35 1 3.2615 -0.3211 6.7829 36 1 5.2369 -1.1079 5.5436 37 1 4.9628 -2.2266 3.3686 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044239992.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:58 Heat of formation + Delta-G solvation = -74.973935 kcal Electronic energy + Delta-G solvation = -20128.318851 eV Core-core repulsion = 17062.987014 eV Total energy + Delta-G solvation = -3065.331836 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.82996 -40.03677 -38.15420 -36.52113 -34.89226 -33.90896 -31.81807 -30.90734 -29.15216 -28.20377 -25.55858 -24.09632 -23.37470 -22.51482 -21.25793 -19.72483 -18.78736 -17.93188 -17.45792 -17.16107 -16.76222 -15.96105 -15.86259 -15.47635 -15.14847 -14.73538 -14.45936 -14.26961 -14.05414 -13.63200 -13.45739 -13.20491 -13.18239 -13.07877 -12.73771 -12.68832 -12.48077 -12.19416 -12.17150 -11.89632 -11.77180 -11.71782 -11.46848 -10.70255 -10.23143 -9.81605 -9.31994 -8.28741 -6.43213 0.38953 0.52304 1.20480 1.34264 1.36127 1.48945 1.76718 2.34603 2.85993 3.00639 3.04210 3.84138 3.96347 4.06383 4.12497 4.14524 4.31167 4.43093 4.60885 4.65445 4.67551 4.76673 4.81488 4.83337 4.94795 5.02471 5.10580 5.15219 5.22479 5.33008 5.47795 5.55086 5.62186 5.64390 5.72463 5.94057 6.08038 6.53899 6.62533 7.21055 7.37571 8.79337 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.014222 B = 0.007784 C = 0.005891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.249402 B = 3596.063864 C = 4751.577813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.080 3.920 3 C -0.135 4.135 4 O -0.361 6.361 5 C 0.645 3.355 6 O -0.601 6.601 7 N -0.545 5.545 8 C 0.280 3.720 9 C -0.545 4.545 10 H 0.049 0.951 11 C 0.013 3.987 12 N -0.924 5.924 13 Si 0.969 3.031 14 H -0.270 1.270 15 H -0.276 1.276 16 H -0.266 1.266 17 C 0.125 3.875 18 C -0.128 4.128 19 C -0.105 4.105 20 C -0.118 4.118 21 C -0.104 4.104 22 C -0.139 4.139 23 H 0.075 0.925 24 H 0.104 0.896 25 H 0.030 0.970 26 H 0.064 0.936 27 H 0.060 0.940 28 H 0.108 0.892 29 H 0.075 0.925 30 H 0.011 0.989 31 H 0.034 0.966 32 H 0.270 0.730 33 H 0.103 0.897 34 H 0.153 0.847 35 H 0.163 0.837 36 H 0.157 0.843 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.006 17.411 5.515 18.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.025 3.975 3 C -0.192 4.192 4 O -0.275 6.275 5 C 0.400 3.600 6 O -0.493 6.493 7 N -0.279 5.279 8 C 0.162 3.838 9 C -0.584 4.584 10 H 0.067 0.933 11 C -0.186 4.186 12 N -0.564 5.564 13 Si 0.793 3.207 14 H -0.195 1.195 15 H -0.202 1.202 16 H -0.191 1.191 17 C 0.035 3.965 18 C -0.148 4.148 19 C -0.124 4.124 20 C -0.136 4.136 21 C -0.122 4.122 22 C -0.159 4.159 23 H 0.094 0.906 24 H 0.122 0.878 25 H 0.049 0.951 26 H 0.083 0.917 27 H 0.079 0.921 28 H 0.126 0.874 29 H 0.094 0.906 30 H 0.029 0.971 31 H 0.051 0.949 32 H 0.079 0.921 33 H 0.121 0.879 34 H 0.170 0.830 35 H 0.181 0.819 36 H 0.174 0.826 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -1.004 17.112 5.090 17.881 hybrid contribution -0.617 -1.321 -0.555 1.560 sum -1.621 15.791 4.536 16.509 Atomic orbital electron populations 1.22192 0.93504 1.01733 1.04612 1.23050 0.95511 0.93873 0.85066 1.21871 1.01845 0.90792 1.04722 1.86377 1.79735 1.18686 1.42717 1.18169 0.76825 0.81481 0.83482 1.90906 1.57650 1.70815 1.29894 1.44719 1.66081 1.10517 1.06598 1.18959 0.95964 0.72483 0.96396 1.21598 0.96777 0.92067 1.47938 0.93256 1.25805 0.99770 0.98637 0.94415 1.70034 1.27375 1.10539 1.48431 0.85346 0.78757 0.78304 0.78304 1.19457 1.20185 1.19082 1.18013 0.94734 0.97221 0.86531 1.21297 0.96947 1.00299 0.96278 1.21320 0.99332 0.97812 0.93910 1.21563 0.91498 0.99575 1.00928 1.21347 1.00909 0.96963 0.92982 1.21386 0.95276 1.00840 0.98399 0.90612 0.87773 0.95073 0.91738 0.92111 0.87393 0.90619 0.97097 0.94858 0.92078 0.87901 0.82960 0.81943 0.82586 0.86597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.37 9.55 71.98 0.69 -3.69 16 2 C 0.08 2.46 3.19 30.59 0.10 2.56 16 3 C -0.14 -2.77 9.57 71.98 0.69 -2.08 16 4 O -0.36 -14.19 8.91 -55.64 -0.50 -14.69 16 5 C 0.64 31.39 8.21 129.79 1.07 32.46 16 6 O -0.60 -33.36 15.23 19.82 0.30 -33.05 16 7 N -0.54 -26.78 2.51 -764.48 -1.92 -28.69 16 8 C 0.28 16.00 5.07 85.63 0.43 16.43 16 9 C -0.55 -32.86 9.39 25.60 0.24 -32.62 16 10 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 11 C 0.01 0.78 5.46 84.65 0.46 1.24 16 12 N -0.92 -56.34 13.29 21.45 0.28 -56.05 16 13 Si 0.97 45.89 29.54 68.60 2.03 47.92 16 14 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 15 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 16 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 17 C 0.13 5.14 4.75 38.14 0.18 5.32 16 18 C -0.13 -4.63 9.54 22.39 0.21 -4.42 16 19 C -0.11 -2.78 10.04 22.25 0.22 -2.55 16 20 C -0.12 -2.64 10.04 22.29 0.22 -2.41 16 21 C -0.10 -2.64 10.04 22.25 0.22 -2.42 16 22 C -0.14 -4.84 9.68 22.39 0.22 -4.63 16 23 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 24 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 25 H 0.03 1.03 8.14 -2.38 -0.02 1.01 16 26 H 0.06 2.23 7.16 -2.39 -0.02 2.21 16 27 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.01 0.70 7.49 -2.38 -0.02 0.68 16 31 H 0.03 1.92 7.86 -2.39 -0.02 1.90 16 32 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 33 H 0.10 3.94 8.06 -2.91 -0.02 3.91 16 34 H 0.15 2.96 8.06 -2.91 -0.02 2.94 16 35 H 0.16 2.26 8.06 -2.91 -0.02 2.24 16 36 H 0.16 2.84 8.06 -2.91 -0.02 2.82 16 37 H 0.12 4.04 8.06 -2.91 -0.02 4.02 16 Total: -1.00 -75.44 323.09 6.20 -69.24 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: 1.04 Total: 12.15 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: 4.96 Total: 3.18 kcal Atomic # 7 Polarization: -83.11 SS G_CDS: -1.63 Total: -84.74 kcal Atomic # 8 Polarization: -47.55 SS G_CDS: -0.19 Total: -47.74 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -75.44 6.20 -69.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044239992.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.734 kcal (2) G-P(sol) polarization free energy of solvation -75.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds