Wall clock time and date at job start Mon Mar 30 2020 07:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29394 * 119.99933 * 2 1 4 4 O 1.41602 * 120.00015 * 173.80730 * 3 2 1 5 5 C 1.47527 * 120.00325 * 180.02562 * 2 1 3 6 6 C 1.39692 * 120.09580 * 141.30291 * 5 2 1 7 7 C 1.37786 * 119.90754 * 179.76297 * 6 5 2 8 8 C 1.38915 * 120.09076 * 0.49058 * 7 6 5 9 9 O 1.35814 * 119.90755 * 179.74219 * 8 7 6 10 10 C 1.42904 * 116.99734 * 0.02562 * 9 8 7 11 11 C 1.53002 * 109.46775 * 180.02562 * 10 9 8 12 12 C 1.53002 * 109.46812 * 179.97438 * 11 10 9 13 13 C 1.50695 * 109.47110 * 179.97438 * 12 11 10 14 14 H 1.08000 * 119.99873 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00257 * 180.02562 * 13 12 11 16 16 N 1.31512 * 119.99832 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00238 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47272 * 89.99630 * 17 15 13 19 19 H 1.48493 * 109.46784 * 209.99807 * 17 15 13 20 20 H 1.48497 * 109.46634 * 329.99517 * 17 15 13 21 21 C 1.38917 * 120.18668 * 359.75852 * 8 7 6 22 22 C 1.37784 * 120.09509 * 0.02562 * 21 8 7 23 23 H 1.08995 * 109.47458 * 269.99825 * 1 2 3 24 24 H 1.09003 * 109.47126 * 30.00139 * 1 2 3 25 25 H 1.09009 * 109.46568 * 149.99740 * 1 2 3 26 26 H 0.96708 * 114.00220 * 180.02562 * 4 3 2 27 27 H 1.08007 * 120.04932 * 359.97438 * 6 5 2 28 28 H 1.08001 * 119.95763 * 180.20326 * 7 6 5 29 29 H 1.09005 * 109.47000 * 299.99914 * 10 9 8 30 30 H 1.08993 * 109.47197 * 59.99840 * 10 9 8 31 31 H 1.09000 * 109.46899 * 299.99196 * 11 10 9 32 32 H 1.08994 * 109.47082 * 59.99658 * 11 10 9 33 33 H 1.08996 * 109.47213 * 300.00126 * 12 11 10 34 34 H 1.09007 * 109.46942 * 59.99608 * 12 11 10 35 35 H 0.97000 * 119.99974 * 179.97438 * 16 15 13 36 36 H 1.08006 * 119.95312 * 179.97438 * 21 8 7 37 37 H 1.07998 * 120.04516 * 179.97438 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1539 1.1206 0.0000 4 8 3.5638 1.1242 0.1323 5 6 2.2447 -1.2776 -0.0006 6 6 3.4118 -1.4122 -0.7563 7 6 4.1004 -2.6056 -0.7501 8 6 3.6300 -3.6773 -0.0019 9 8 4.3088 -4.8536 -0.0026 10 6 5.4970 -4.9164 -0.7942 11 6 6.1188 -6.3089 -0.6710 12 6 7.3905 -6.3764 -1.5190 13 6 8.0034 -7.7477 -1.3972 14 1 7.5331 -8.4961 -0.7767 15 6 9.1650 -8.0465 -2.0771 16 7 9.7380 -7.1350 -2.8323 17 14 9.9243 -9.7467 -1.9267 18 1 9.3717 -10.6309 -2.9840 19 1 11.3974 -9.6466 -2.0851 20 1 9.6074 -10.3138 -0.5914 21 6 2.4669 -3.5494 0.7469 22 6 1.7746 -2.3581 0.7499 23 1 -0.3634 0.0000 1.0276 24 1 -0.3633 0.8900 -0.5139 25 1 -0.3633 -0.8901 -0.5139 26 1 3.9576 2.0074 0.1218 27 1 3.7759 -0.5809 -1.3419 28 1 5.0047 -2.7095 -1.3315 29 1 5.2493 -4.7205 -1.8375 30 1 6.2076 -4.1684 -0.4429 31 1 6.3665 -6.5052 0.3722 32 1 5.4079 -7.0566 -1.0226 33 1 7.1425 -6.1801 -2.5621 34 1 8.1015 -5.6285 -1.1677 35 1 10.5554 -7.3451 -3.3104 36 1 2.1043 -4.3852 1.3270 37 1 0.8703 -2.2596 1.3320 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049578647.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:41 Heat of formation + Delta-G solvation = -25.525620 kcal Electronic energy + Delta-G solvation = -18453.533706 eV Core-core repulsion = 15390.346109 eV Total energy + Delta-G solvation = -3063.187597 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.11445 -38.27851 -36.55637 -34.38105 -33.88333 -31.79703 -31.13170 -29.32324 -28.49257 -26.95825 -23.83990 -22.92328 -22.03776 -20.24700 -19.79579 -18.26950 -17.59043 -16.40906 -16.02992 -15.84164 -15.51166 -14.66909 -14.49613 -14.39544 -13.89169 -13.57964 -13.44609 -13.31523 -12.90410 -12.77276 -12.42062 -12.27651 -12.08654 -11.78101 -11.15524 -11.05884 -10.71764 -10.61179 -10.46982 -10.16743 -9.84732 -9.69683 -9.56171 -9.18974 -9.07652 -8.40981 -8.00854 -6.06034 -4.08810 0.90433 1.33005 2.08030 2.91853 3.29738 3.35639 3.38253 3.44858 3.73530 4.26814 4.42572 4.77360 4.83242 5.10905 5.15850 5.19283 5.23965 5.30199 5.39007 5.49209 5.56598 5.59021 5.69018 5.91481 5.97951 6.16542 6.28882 6.40080 6.51370 6.53892 6.64734 6.77391 6.95143 7.49133 7.55801 7.59876 7.68125 7.92343 8.33959 8.97402 9.55703 11.05497 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.044947 B = 0.002907 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.800654 B = 9630.267417 C =10101.826419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.183 3.817 3 N -0.346 5.346 4 O -0.405 6.405 5 C -0.155 4.155 6 C -0.030 4.030 7 C -0.217 4.217 8 C 0.159 3.841 9 O -0.313 6.313 10 C 0.057 3.943 11 C -0.108 4.108 12 C 0.024 3.976 13 C -0.521 4.521 14 H 0.057 0.943 15 C 0.057 3.943 16 N -0.896 5.896 17 Si 0.895 3.105 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.273 1.273 21 C -0.166 4.166 22 C -0.052 4.052 23 H 0.087 0.913 24 H 0.080 0.920 25 H 0.086 0.914 26 H 0.397 0.603 27 H 0.126 0.874 28 H 0.134 0.866 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.019 0.981 34 H 0.019 0.981 35 H 0.262 0.738 36 H 0.133 0.867 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.875 14.563 5.615 23.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.007 4.007 3 N -0.088 5.088 4 O -0.312 6.312 5 C -0.158 4.158 6 C -0.050 4.050 7 C -0.236 4.236 8 C 0.111 3.889 9 O -0.226 6.226 10 C -0.017 4.017 11 C -0.146 4.146 12 C -0.013 4.013 13 C -0.560 4.560 14 H 0.076 0.924 15 C -0.145 4.145 16 N -0.535 5.535 17 Si 0.723 3.277 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.198 1.198 21 C -0.185 4.185 22 C -0.071 4.071 23 H 0.105 0.895 24 H 0.099 0.901 25 H 0.105 0.895 26 H 0.244 0.756 27 H 0.144 0.856 28 H 0.152 0.848 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.037 0.963 34 H 0.037 0.963 35 H 0.071 0.929 36 H 0.151 0.849 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -17.891 14.777 5.562 23.861 hybrid contribution 1.304 -0.903 -0.163 1.595 sum -16.586 13.874 5.399 22.288 Atomic orbital electron populations 1.20703 0.86721 1.04292 1.03805 1.23690 0.96114 0.88727 0.92153 1.76508 0.91585 1.24562 1.16180 1.88584 1.13511 1.34589 1.94544 1.19149 0.98350 0.94142 1.04122 1.21016 0.92011 0.96367 0.95575 1.21317 1.03370 0.93916 1.04972 1.19345 0.91334 0.85356 0.92844 1.86118 1.38981 1.30906 1.66571 1.23269 0.83203 1.01492 0.93776 1.21730 0.99032 0.91737 1.02082 1.19048 0.90086 0.97624 0.94502 1.21178 1.08602 0.97738 1.28450 0.92433 1.25027 0.96987 0.97251 0.95194 1.69959 1.19660 1.33645 1.30198 0.86541 0.78327 0.84313 0.78543 1.20587 1.21174 1.19795 1.20369 0.95481 0.99075 1.03546 1.20972 0.98474 0.91068 0.96632 0.89469 0.90081 0.89544 0.75591 0.85565 0.84788 0.92168 0.92171 0.92140 0.92134 0.96303 0.96299 0.92888 0.84866 0.85167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.61 9.62 36.00 0.35 -0.27 16 2 C 0.18 1.91 6.80 -79.83 -0.54 1.37 16 3 N -0.35 -3.98 12.11 35.07 0.42 -3.56 16 4 O -0.41 -4.58 12.16 -11.47 -0.14 -4.72 16 5 C -0.16 -1.87 5.41 -105.02 -0.57 -2.44 16 6 C -0.03 -0.40 8.58 -39.20 -0.34 -0.74 16 7 C -0.22 -3.13 9.02 -39.50 -0.36 -3.49 16 8 C 0.16 2.41 6.69 -39.08 -0.26 2.15 16 9 O -0.31 -5.37 10.13 -19.16 -0.19 -5.57 16 10 C 0.06 1.01 4.74 37.16 0.18 1.18 16 11 C -0.11 -2.25 5.52 -26.73 -0.15 -2.39 16 12 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 13 C -0.52 -14.69 9.11 -34.44 -0.31 -15.00 16 14 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.90 -26.71 13.29 55.43 0.74 -25.97 16 17 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 21 C -0.17 -2.12 9.97 -39.50 -0.39 -2.51 16 22 C -0.05 -0.56 9.47 -39.20 -0.37 -0.93 16 23 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.09 0.45 8.11 -51.92 -0.42 0.02 16 26 H 0.40 2.63 9.28 45.56 0.42 3.05 16 27 H 0.13 1.64 6.94 -52.48 -0.36 1.27 16 28 H 0.13 1.88 6.28 -52.49 -0.33 1.55 16 29 H 0.06 1.02 7.65 -51.93 -0.40 0.62 16 30 H 0.06 1.03 7.65 -51.93 -0.40 0.63 16 31 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 36 H 0.13 1.49 8.06 -52.48 -0.42 1.07 16 37 H 0.13 0.99 7.79 -52.49 -0.41 0.58 16 LS Contribution 320.56 15.07 4.83 4.83 Total: -1.00 -32.65 320.56 -6.76 -39.41 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -4.40 Total: 0.10 kcal Atomic # 6 Polarization: -18.06 SS G_CDS: -3.01 Total: -21.07 kcal Atomic # 7 Polarization: -30.69 SS G_CDS: 1.16 Total: -29.53 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: -0.33 Total: -10.28 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.65 -6.76 -39.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049578647.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.886 kcal (2) G-P(sol) polarization free energy of solvation -32.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds