Wall clock time and date at job start Mon Mar 30 2020 07:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29394 * 119.99933 * 2 1 4 4 O 1.41602 * 120.00015 * 173.80730 * 3 2 1 5 5 C 1.47527 * 120.00325 * 180.02562 * 2 1 3 6 6 C 1.39692 * 120.09580 * 141.30291 * 5 2 1 7 7 C 1.37786 * 119.90754 * 179.76297 * 6 5 2 8 8 C 1.38915 * 120.09076 * 0.49058 * 7 6 5 9 9 O 1.35814 * 119.90755 * 179.74219 * 8 7 6 10 10 C 1.42904 * 116.99734 * 0.02562 * 9 8 7 11 11 C 1.53002 * 109.46775 * 180.02562 * 10 9 8 12 12 C 1.53002 * 109.46812 * 179.97438 * 11 10 9 13 13 C 1.50695 * 109.47110 * 179.97438 * 12 11 10 14 14 H 1.08000 * 119.99873 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00257 * 180.02562 * 13 12 11 16 16 N 1.31512 * 119.99832 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00238 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47272 * 89.99630 * 17 15 13 19 19 H 1.48493 * 109.46784 * 209.99807 * 17 15 13 20 20 H 1.48497 * 109.46634 * 329.99517 * 17 15 13 21 21 C 1.38917 * 120.18668 * 359.75852 * 8 7 6 22 22 C 1.37784 * 120.09509 * 0.02562 * 21 8 7 23 23 H 1.08995 * 109.47458 * 269.99825 * 1 2 3 24 24 H 1.09003 * 109.47126 * 30.00139 * 1 2 3 25 25 H 1.09009 * 109.46568 * 149.99740 * 1 2 3 26 26 H 0.96708 * 114.00220 * 180.02562 * 4 3 2 27 27 H 1.08007 * 120.04932 * 359.97438 * 6 5 2 28 28 H 1.08001 * 119.95763 * 180.20326 * 7 6 5 29 29 H 1.09005 * 109.47000 * 299.99914 * 10 9 8 30 30 H 1.08993 * 109.47197 * 59.99840 * 10 9 8 31 31 H 1.09000 * 109.46899 * 299.99196 * 11 10 9 32 32 H 1.08994 * 109.47082 * 59.99658 * 11 10 9 33 33 H 1.08996 * 109.47213 * 300.00126 * 12 11 10 34 34 H 1.09007 * 109.46942 * 59.99608 * 12 11 10 35 35 H 0.97000 * 119.99974 * 179.97438 * 16 15 13 36 36 H 1.08006 * 119.95312 * 179.97438 * 21 8 7 37 37 H 1.07998 * 120.04516 * 179.97438 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1539 1.1206 0.0000 4 8 3.5638 1.1242 0.1323 5 6 2.2447 -1.2776 -0.0006 6 6 3.4118 -1.4122 -0.7563 7 6 4.1004 -2.6056 -0.7501 8 6 3.6300 -3.6773 -0.0019 9 8 4.3088 -4.8536 -0.0026 10 6 5.4970 -4.9164 -0.7942 11 6 6.1188 -6.3089 -0.6710 12 6 7.3905 -6.3764 -1.5190 13 6 8.0034 -7.7477 -1.3972 14 1 7.5331 -8.4961 -0.7767 15 6 9.1650 -8.0465 -2.0771 16 7 9.7380 -7.1350 -2.8323 17 14 9.9243 -9.7467 -1.9267 18 1 9.3717 -10.6309 -2.9840 19 1 11.3974 -9.6466 -2.0851 20 1 9.6074 -10.3138 -0.5914 21 6 2.4669 -3.5494 0.7469 22 6 1.7746 -2.3581 0.7499 23 1 -0.3634 0.0000 1.0276 24 1 -0.3633 0.8900 -0.5139 25 1 -0.3633 -0.8901 -0.5139 26 1 3.9576 2.0074 0.1218 27 1 3.7759 -0.5809 -1.3419 28 1 5.0047 -2.7095 -1.3315 29 1 5.2493 -4.7205 -1.8375 30 1 6.2076 -4.1684 -0.4429 31 1 6.3665 -6.5052 0.3722 32 1 5.4079 -7.0566 -1.0226 33 1 7.1425 -6.1801 -2.5621 34 1 8.1015 -5.6285 -1.1677 35 1 10.5554 -7.3451 -3.3104 36 1 2.1043 -4.3852 1.3270 37 1 0.8703 -2.2596 1.3320 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049578647.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:41 Heat of formation + Delta-G solvation = -46.451189 kcal Electronic energy + Delta-G solvation = -18454.441107 eV Core-core repulsion = 15390.346109 eV Total energy + Delta-G solvation = -3064.094997 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.21973 -39.31213 -37.50906 -36.01974 -35.00291 -33.68134 -32.16170 -30.44126 -29.10369 -28.73832 -25.53509 -23.93717 -23.36547 -21.91935 -20.61630 -19.34668 -18.73829 -18.34566 -17.24818 -17.06029 -16.55756 -16.49345 -15.58924 -15.23270 -15.01817 -14.80932 -14.69101 -14.33262 -14.12640 -13.78487 -13.54941 -13.45669 -13.32761 -13.06231 -12.83030 -12.60946 -12.41392 -12.23005 -11.84476 -11.56404 -11.53007 -11.26924 -11.00098 -10.58929 -10.58719 -10.06413 -9.07658 -8.23828 -6.35010 -0.05247 0.33460 1.21907 1.40134 1.41396 1.52712 2.15186 2.20314 2.41493 2.74092 3.10130 3.46573 3.75127 3.86501 3.99574 4.06793 4.25802 4.36788 4.40069 4.53460 4.57352 4.71671 4.78569 4.81413 4.88156 4.97954 5.06800 5.12639 5.29762 5.31515 5.44466 5.45475 5.62680 5.70704 5.78321 5.93541 6.17343 6.37590 6.78639 6.80525 7.34482 8.88318 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.044947 B = 0.002907 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.800654 B = 9630.267417 C =10101.826419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.181 3.819 3 N -0.361 5.361 4 O -0.425 6.425 5 C -0.155 4.155 6 C -0.043 4.043 7 C -0.229 4.229 8 C 0.128 3.872 9 O -0.325 6.325 10 C 0.070 3.930 11 C -0.095 4.095 12 C 0.028 3.972 13 C -0.545 4.545 14 H 0.062 0.938 15 C 0.000 4.000 16 N -0.933 5.933 17 Si 0.967 3.033 18 H -0.271 1.271 19 H -0.281 1.281 20 H -0.263 1.263 21 C -0.166 4.166 22 C -0.040 4.040 23 H 0.110 0.890 24 H 0.088 0.912 25 H 0.101 0.899 26 H 0.412 0.588 27 H 0.124 0.876 28 H 0.127 0.873 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.062 0.938 33 H -0.001 1.001 34 H -0.002 1.002 35 H 0.265 0.735 36 H 0.150 0.850 37 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.885 14.350 6.732 25.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.009 4.009 3 N -0.104 5.104 4 O -0.334 6.334 5 C -0.158 4.158 6 C -0.062 4.062 7 C -0.247 4.247 8 C 0.082 3.918 9 O -0.238 6.238 10 C -0.005 4.005 11 C -0.133 4.133 12 C -0.009 4.009 13 C -0.583 4.583 14 H 0.080 0.920 15 C -0.198 4.198 16 N -0.573 5.573 17 Si 0.792 3.208 18 H -0.197 1.197 19 H -0.207 1.207 20 H -0.187 1.187 21 C -0.184 4.184 22 C -0.059 4.059 23 H 0.128 0.872 24 H 0.106 0.894 25 H 0.120 0.880 26 H 0.262 0.738 27 H 0.142 0.858 28 H 0.145 0.855 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.017 0.983 34 H 0.016 0.984 35 H 0.074 0.926 36 H 0.168 0.832 37 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -19.910 14.588 6.687 25.572 hybrid contribution 1.852 -0.711 -0.498 2.045 sum -18.059 13.877 6.189 23.601 Atomic orbital electron populations 1.20896 0.83540 1.05421 1.05566 1.24326 0.97921 0.87504 0.91111 1.76513 0.91517 1.25230 1.17158 1.88551 1.13878 1.36345 1.94674 1.19489 0.97690 0.95376 1.03219 1.21087 0.92885 0.95870 0.96400 1.21328 1.03558 0.94488 1.05364 1.19644 0.92590 0.84831 0.94758 1.86039 1.38711 1.32312 1.66770 1.22900 0.83889 0.99411 0.94285 1.21433 0.97110 0.93849 1.00918 1.18916 0.91743 0.96143 0.94114 1.21628 1.09182 0.98895 1.28598 0.91998 1.25984 0.97521 1.01601 0.94673 1.70085 1.20202 1.35924 1.31048 0.85408 0.77350 0.79042 0.79037 1.19652 1.20669 1.18742 1.20694 0.94496 1.00404 1.02852 1.21394 0.99185 0.89563 0.95748 0.87184 0.89361 0.88046 0.73807 0.85843 0.85527 0.91823 0.92092 0.92111 0.91938 0.98254 0.98365 0.92631 0.83187 0.80982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.87 9.62 71.24 0.69 -0.18 16 2 C 0.18 3.36 6.80 45.37 0.31 3.67 16 3 N -0.36 -7.80 12.11 -42.95 -0.52 -8.32 16 4 O -0.43 -9.41 12.16 -38.79 -0.47 -9.88 16 5 C -0.16 -3.45 5.41 -20.12 -0.11 -3.56 16 6 C -0.04 -1.14 8.58 22.51 0.19 -0.94 16 7 C -0.23 -6.71 9.02 22.32 0.20 -6.50 16 8 C 0.13 3.84 6.69 22.59 0.15 3.99 16 9 O -0.32 -11.15 10.13 -91.47 -0.93 -12.07 16 10 C 0.07 2.52 4.74 71.98 0.34 2.87 16 11 C -0.10 -4.03 5.52 30.60 0.17 -3.86 16 12 C 0.03 1.47 4.97 29.85 0.15 1.62 16 13 C -0.55 -31.11 9.11 25.60 0.23 -30.88 16 14 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 15 C 0.00 0.01 5.46 84.66 0.46 0.47 16 16 N -0.93 -56.59 13.29 21.45 0.28 -56.31 16 17 Si 0.97 44.20 29.54 68.60 2.03 46.22 16 18 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 19 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 20 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 21 C -0.17 -3.89 9.97 22.32 0.22 -3.67 16 22 C -0.04 -0.74 9.47 22.52 0.21 -0.53 16 23 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 24 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.10 0.63 8.11 -2.38 -0.02 0.61 16 26 H 0.41 5.36 9.28 -74.05 -0.69 4.68 16 27 H 0.12 3.26 6.94 -2.91 -0.02 3.24 16 28 H 0.13 3.76 6.28 -2.91 -0.02 3.74 16 29 H 0.06 2.22 7.65 -2.38 -0.02 2.21 16 30 H 0.06 2.16 7.65 -2.39 -0.02 2.14 16 31 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 32 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 33 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 34 H 0.00 -0.11 8.14 -2.38 -0.02 -0.13 16 35 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 36 H 0.15 2.96 8.06 -2.91 -0.02 2.93 16 37 H 0.17 1.74 7.79 -2.91 -0.02 1.72 16 Total: -1.00 -70.71 320.56 4.00 -66.71 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: 0.38 Total: 11.14 kcal Atomic # 6 Polarization: -40.72 SS G_CDS: 3.22 Total: -37.50 kcal Atomic # 7 Polarization: -64.39 SS G_CDS: -0.24 Total: -64.63 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: -1.40 Total: -21.95 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.22 kcal Total: -70.71 4.00 -66.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049578647.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.263 kcal (2) G-P(sol) polarization free energy of solvation -70.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds