Wall clock time and date at job start Mon Mar 30 2020 07:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.29408 * 119.99830 * 2 1 4 4 O 1.41601 * 119.99997 * 174.62818 * 3 2 1 5 5 C 1.47475 * 120.00022 * 180.02562 * 2 1 3 6 6 C 1.39646 * 120.18640 * 114.50297 * 5 2 1 7 7 C 1.37876 * 119.90000 * 179.97438 * 6 5 2 8 8 C 1.38469 * 120.28589 * 359.97064 * 7 6 5 9 9 C 1.38148 * 120.37637 * 0.02562 * 8 7 6 10 10 C 1.38597 * 120.08997 * 0.02562 * 9 8 7 11 11 O 1.35763 * 120.14104 * 179.97438 * 10 9 8 12 12 C 1.42894 * 117.00069 * 359.97438 * 11 10 9 13 13 C 1.52999 * 109.47434 * 179.97438 * 12 11 10 14 14 C 1.53001 * 109.47354 * 179.97438 * 13 12 11 15 15 C 1.50706 * 109.46996 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00044 * 359.97438 * 15 14 13 17 17 C 1.37871 * 119.99935 * 180.02562 * 15 14 13 18 18 N 1.31523 * 120.00026 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00252 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47313 * 59.99047 * 19 17 15 21 21 H 1.48495 * 109.47465 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.46700 * 299.99389 * 19 17 15 23 23 H 1.08998 * 109.46898 * 269.99340 * 1 2 3 24 24 H 1.08999 * 109.47017 * 29.99581 * 1 2 3 25 25 H 1.08998 * 109.46822 * 149.99716 * 1 2 3 26 26 H 0.96696 * 113.99999 * 180.02562 * 4 3 2 27 27 H 1.07996 * 120.04450 * 359.94388 * 6 5 2 28 28 H 1.08005 * 119.85554 * 179.97438 * 7 6 5 29 29 H 1.07998 * 119.80844 * 179.74461 * 8 7 6 30 30 H 1.08003 * 119.95521 * 179.97438 * 9 8 7 31 31 H 1.09000 * 109.47476 * 300.00420 * 12 11 10 32 32 H 1.09000 * 109.46983 * 60.00056 * 12 11 10 33 33 H 1.09000 * 109.47250 * 300.00703 * 13 12 11 34 34 H 1.09000 * 109.46871 * 60.00133 * 13 12 11 35 35 H 1.08993 * 109.47067 * 300.00208 * 14 13 12 36 36 H 1.09000 * 109.46940 * 60.00277 * 14 13 12 37 37 H 0.96997 * 119.99704 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1541 1.1207 0.0000 4 8 3.5654 1.1235 0.1148 5 6 2.2444 -1.2772 -0.0006 6 6 3.0291 -1.6344 -1.0991 7 6 3.7164 -2.8297 -1.0931 8 6 3.6327 -3.6779 -0.0019 9 6 2.8600 -3.3360 1.0911 10 6 2.1618 -2.1388 1.1012 11 8 1.4017 -1.8020 2.1745 12 6 1.3659 -2.7296 3.2608 13 6 0.4656 -2.1817 4.3700 14 6 0.4268 -3.1752 5.5329 15 6 -0.4604 -2.6357 6.6251 16 1 -0.9475 -1.6797 6.5023 17 6 -0.6495 -3.3622 7.7815 18 7 -0.0559 -4.5263 7.9313 19 14 -1.7498 -2.6939 9.1351 20 1 -3.1232 -2.4987 8.6054 21 1 -1.7874 -3.6581 10.2638 22 1 -1.2137 -1.3937 9.6119 23 1 -0.3633 -0.0001 1.0277 24 1 -0.3633 0.8900 -0.5138 25 1 -0.3633 -0.8900 -0.5139 26 1 3.9590 2.0066 0.1057 27 1 3.0969 -0.9757 -1.9522 28 1 4.3227 -3.1055 -1.9433 29 1 4.1711 -4.6141 -0.0071 30 1 2.7993 -4.0029 1.9384 31 1 0.9722 -3.6839 2.9110 32 1 2.3741 -2.8731 3.6494 33 1 0.8598 -1.2275 4.7197 34 1 -0.5426 -2.0379 3.9817 35 1 0.0324 -4.1291 5.1828 36 1 1.4350 -3.3195 5.9213 37 1 -0.1892 -5.0375 8.7448 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049578649.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:44 Heat of formation + Delta-G solvation = -23.876329 kcal Electronic energy + Delta-G solvation = -19035.717491 eV Core-core repulsion = 15972.601413 eV Total energy + Delta-G solvation = -3063.116078 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.17357 -37.73178 -36.75465 -34.32064 -34.01130 -31.79095 -30.48788 -29.62013 -28.25120 -26.95505 -23.85672 -23.12969 -21.74310 -20.43205 -19.60490 -18.23250 -17.29243 -16.36219 -15.94177 -15.79722 -15.59810 -14.84603 -14.49738 -14.29133 -13.93720 -13.61425 -13.31486 -13.14229 -12.64782 -12.48406 -12.28769 -12.12380 -11.93866 -11.62453 -11.39806 -11.04830 -10.66711 -10.64205 -10.56526 -9.99477 -9.79989 -9.60421 -9.53179 -9.20415 -8.89907 -8.40615 -8.10174 -6.05957 -4.08809 1.08523 1.43638 1.99151 3.10985 3.31373 3.35416 3.36477 3.42787 3.70041 4.38380 4.42586 4.84576 4.90605 5.18045 5.28368 5.30246 5.37777 5.47761 5.49272 5.58222 5.59162 5.60199 5.82887 5.93037 6.05442 6.24536 6.31249 6.45073 6.50871 6.54770 6.73879 6.80021 6.94670 7.54165 7.57829 7.67817 7.68719 7.92196 8.33775 8.97085 9.55720 11.05502 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.025906 B = 0.003869 C = 0.003529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.572586 B = 7234.749927 C = 7932.695113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.197 3.803 3 N -0.339 5.339 4 O -0.407 6.407 5 C -0.136 4.136 6 C -0.049 4.049 7 C -0.169 4.169 8 C -0.068 4.068 9 C -0.213 4.213 10 C 0.166 3.834 11 O -0.311 6.311 12 C 0.058 3.942 13 C -0.107 4.107 14 C 0.025 3.975 15 C -0.522 4.522 16 H 0.057 0.943 17 C 0.058 3.942 18 N -0.896 5.896 19 Si 0.895 3.105 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.276 1.276 23 H 0.096 0.904 24 H 0.078 0.922 25 H 0.082 0.918 26 H 0.396 0.604 27 H 0.123 0.877 28 H 0.123 0.877 29 H 0.125 0.875 30 H 0.135 0.865 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.019 0.981 36 H 0.018 0.982 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.646 5.018 -18.842 20.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.006 3.994 3 N -0.081 5.081 4 O -0.314 6.314 5 C -0.138 4.138 6 C -0.068 4.068 7 C -0.187 4.187 8 C -0.087 4.087 9 C -0.231 4.231 10 C 0.118 3.882 11 O -0.223 6.223 12 C -0.017 4.017 13 C -0.145 4.145 14 C -0.012 4.012 15 C -0.560 4.560 16 H 0.075 0.925 17 C -0.144 4.144 18 N -0.535 5.535 19 Si 0.723 3.277 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.202 1.202 23 H 0.114 0.886 24 H 0.097 0.903 25 H 0.101 0.899 26 H 0.243 0.757 27 H 0.141 0.859 28 H 0.141 0.859 29 H 0.143 0.857 30 H 0.152 0.848 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.037 0.963 36 H 0.037 0.963 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.393 5.410 -18.683 20.184 hybrid contribution 0.188 -0.212 0.940 0.982 sum 5.581 5.198 -17.743 19.312 Atomic orbital electron populations 1.20700 0.86362 1.03550 1.04650 1.23570 0.96239 0.88181 0.91443 1.76574 0.91299 1.24266 1.15985 1.88554 1.13493 1.34406 1.94928 1.18613 1.04462 0.95818 0.94940 1.20852 0.93775 0.96026 0.96137 1.20872 1.02931 0.95431 0.99462 1.21037 0.96253 0.98890 0.92476 1.21325 1.02622 0.97792 1.01391 1.19083 0.90016 0.92012 0.87128 1.86091 1.63385 1.47625 1.25226 1.23261 1.01212 0.91784 0.85397 1.21723 0.97686 1.01111 0.93994 1.19039 0.97549 0.93646 0.90955 1.21138 1.28685 1.05076 1.01134 0.92498 1.25015 0.96005 0.94893 0.98451 1.69951 1.43436 1.12707 1.27375 0.86609 0.81098 0.78732 0.81303 1.20149 1.21243 1.20170 0.88580 0.90308 0.89935 0.75735 0.85947 0.85888 0.85725 0.84759 0.92102 0.92305 0.92239 0.92109 0.96283 0.96349 0.92841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.04 10.04 36.01 0.36 -0.68 16 2 C 0.20 2.73 6.13 -79.85 -0.49 2.24 16 3 N -0.34 -4.84 12.12 35.06 0.42 -4.42 16 4 O -0.41 -5.46 13.92 -11.47 -0.16 -5.62 16 5 C -0.14 -1.95 4.78 -104.91 -0.50 -2.45 16 6 C -0.05 -0.60 9.44 -39.19 -0.37 -0.97 16 7 C -0.17 -1.88 10.02 -39.63 -0.40 -2.28 16 8 C -0.07 -0.80 10.03 -39.53 -0.40 -1.19 16 9 C -0.21 -2.94 9.03 -39.48 -0.36 -3.30 16 10 C 0.17 2.57 6.69 -38.75 -0.26 2.31 16 11 O -0.31 -5.29 9.44 -19.00 -0.18 -5.47 16 12 C 0.06 1.00 4.74 37.16 0.18 1.18 16 13 C -0.11 -2.21 5.52 -26.73 -0.15 -2.35 16 14 C 0.03 0.64 4.97 -27.88 -0.14 0.50 16 15 C -0.52 -14.61 9.11 -34.44 -0.31 -14.92 16 16 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.90 -26.54 13.29 55.43 0.74 -25.80 16 19 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 24 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 25 H 0.08 0.79 8.11 -51.93 -0.42 0.37 16 26 H 0.40 3.31 9.28 45.56 0.42 3.74 16 27 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 28 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 29 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 30 H 0.13 1.77 6.30 -52.48 -0.33 1.44 16 31 H 0.06 0.99 7.66 -51.93 -0.40 0.60 16 32 H 0.06 1.00 7.66 -51.93 -0.40 0.60 16 33 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 34 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 323.68 15.07 4.88 4.88 Total: -1.00 -32.37 323.68 -6.72 -39.09 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -4.47 Total: 1.28 kcal Atomic # 6 Polarization: -17.46 SS G_CDS: -2.93 Total: -20.39 kcal Atomic # 7 Polarization: -31.38 SS G_CDS: 1.16 Total: -30.22 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: -0.34 Total: -11.08 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.37 -6.72 -39.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049578649.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.212 kcal (2) G-P(sol) polarization free energy of solvation -32.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds