Wall clock time and date at job start Mon Mar 30 2020 07:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.29408 * 119.99830 * 2 1 4 4 O 1.41601 * 119.99997 * 174.62818 * 3 2 1 5 5 C 1.47475 * 120.00022 * 180.02562 * 2 1 3 6 6 C 1.39646 * 120.18640 * 114.50297 * 5 2 1 7 7 C 1.37876 * 119.90000 * 179.97438 * 6 5 2 8 8 C 1.38469 * 120.28589 * 359.97064 * 7 6 5 9 9 C 1.38148 * 120.37637 * 0.02562 * 8 7 6 10 10 C 1.38597 * 120.08997 * 0.02562 * 9 8 7 11 11 O 1.35763 * 120.14104 * 179.97438 * 10 9 8 12 12 C 1.42894 * 117.00069 * 359.97438 * 11 10 9 13 13 C 1.52999 * 109.47434 * 179.97438 * 12 11 10 14 14 C 1.53001 * 109.47354 * 179.97438 * 13 12 11 15 15 C 1.50706 * 109.46996 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00044 * 359.97438 * 15 14 13 17 17 C 1.37871 * 119.99935 * 180.02562 * 15 14 13 18 18 N 1.31523 * 120.00026 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00252 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47313 * 59.99047 * 19 17 15 21 21 H 1.48495 * 109.47465 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.46700 * 299.99389 * 19 17 15 23 23 H 1.08998 * 109.46898 * 269.99340 * 1 2 3 24 24 H 1.08999 * 109.47017 * 29.99581 * 1 2 3 25 25 H 1.08998 * 109.46822 * 149.99716 * 1 2 3 26 26 H 0.96696 * 113.99999 * 180.02562 * 4 3 2 27 27 H 1.07996 * 120.04450 * 359.94388 * 6 5 2 28 28 H 1.08005 * 119.85554 * 179.97438 * 7 6 5 29 29 H 1.07998 * 119.80844 * 179.74461 * 8 7 6 30 30 H 1.08003 * 119.95521 * 179.97438 * 9 8 7 31 31 H 1.09000 * 109.47476 * 300.00420 * 12 11 10 32 32 H 1.09000 * 109.46983 * 60.00056 * 12 11 10 33 33 H 1.09000 * 109.47250 * 300.00703 * 13 12 11 34 34 H 1.09000 * 109.46871 * 60.00133 * 13 12 11 35 35 H 1.08993 * 109.47067 * 300.00208 * 14 13 12 36 36 H 1.09000 * 109.46940 * 60.00277 * 14 13 12 37 37 H 0.96997 * 119.99704 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1541 1.1207 0.0000 4 8 3.5654 1.1235 0.1148 5 6 2.2444 -1.2772 -0.0006 6 6 3.0291 -1.6344 -1.0991 7 6 3.7164 -2.8297 -1.0931 8 6 3.6327 -3.6779 -0.0019 9 6 2.8600 -3.3360 1.0911 10 6 2.1618 -2.1388 1.1012 11 8 1.4017 -1.8020 2.1745 12 6 1.3659 -2.7296 3.2608 13 6 0.4656 -2.1817 4.3700 14 6 0.4268 -3.1752 5.5329 15 6 -0.4604 -2.6357 6.6251 16 1 -0.9475 -1.6797 6.5023 17 6 -0.6495 -3.3622 7.7815 18 7 -0.0559 -4.5263 7.9313 19 14 -1.7498 -2.6939 9.1351 20 1 -3.1232 -2.4987 8.6054 21 1 -1.7874 -3.6581 10.2638 22 1 -1.2137 -1.3937 9.6119 23 1 -0.3633 -0.0001 1.0277 24 1 -0.3633 0.8900 -0.5138 25 1 -0.3633 -0.8900 -0.5139 26 1 3.9590 2.0066 0.1057 27 1 3.0969 -0.9757 -1.9522 28 1 4.3227 -3.1055 -1.9433 29 1 4.1711 -4.6141 -0.0071 30 1 2.7993 -4.0029 1.9384 31 1 0.9722 -3.6839 2.9110 32 1 2.3741 -2.8731 3.6494 33 1 0.8598 -1.2275 4.7197 34 1 -0.5426 -2.0379 3.9817 35 1 0.0324 -4.1291 5.1828 36 1 1.4350 -3.3195 5.9213 37 1 -0.1892 -5.0375 8.7448 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049578649.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:43 Heat of formation + Delta-G solvation = -44.378146 kcal Electronic energy + Delta-G solvation = -19036.606516 eV Core-core repulsion = 15972.601413 eV Total energy + Delta-G solvation = -3064.005103 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.27293 -38.87490 -37.76453 -35.98567 -35.25139 -33.69796 -31.46124 -30.77069 -29.17558 -28.73047 -25.49495 -24.24507 -23.01019 -22.03630 -20.68440 -19.34009 -18.64926 -18.12767 -17.24516 -16.94738 -16.70807 -16.50234 -15.76454 -15.32743 -15.08814 -14.96138 -14.58422 -14.32332 -14.07723 -13.67622 -13.57418 -13.43972 -13.24131 -12.82699 -12.71778 -12.61547 -12.43539 -12.21002 -12.05113 -11.55403 -11.49537 -11.27098 -11.00832 -10.58005 -10.56607 -9.88278 -9.16928 -8.22296 -6.33229 0.10225 0.42554 0.97716 1.41061 1.43684 1.51650 2.12740 2.21700 2.42491 2.72025 3.11704 3.42243 3.85352 3.93511 4.02287 4.15649 4.27238 4.39174 4.43702 4.47908 4.59776 4.65824 4.72475 4.80603 4.89039 4.91191 5.07948 5.19053 5.27319 5.38939 5.46624 5.49967 5.64743 5.78661 5.79904 5.86467 6.19059 6.38835 6.79068 6.81843 7.36122 8.89489 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.025906 B = 0.003869 C = 0.003529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.572586 B = 7234.749927 C = 7932.695113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.187 3.813 3 N -0.352 5.352 4 O -0.420 6.420 5 C -0.148 4.148 6 C -0.054 4.054 7 C -0.158 4.158 8 C -0.068 4.068 9 C -0.224 4.224 10 C 0.135 3.865 11 O -0.323 6.323 12 C 0.071 3.929 13 C -0.095 4.095 14 C 0.029 3.971 15 C -0.546 4.546 16 H 0.060 0.940 17 C 0.003 3.997 18 N -0.931 5.931 19 Si 0.965 3.035 20 H -0.266 1.266 21 H -0.282 1.282 22 H -0.269 1.269 23 H 0.086 0.914 24 H 0.095 0.905 25 H 0.095 0.905 26 H 0.413 0.587 27 H 0.137 0.863 28 H 0.157 0.843 29 H 0.154 0.846 30 H 0.134 0.866 31 H 0.070 0.930 32 H 0.059 0.941 33 H 0.053 0.947 34 H 0.064 0.936 35 H 0.002 0.998 36 H -0.003 1.003 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.768 5.286 -20.013 21.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.004 4.004 3 N -0.094 5.094 4 O -0.330 6.330 5 C -0.151 4.151 6 C -0.073 4.073 7 C -0.176 4.176 8 C -0.086 4.086 9 C -0.243 4.243 10 C 0.088 3.912 11 O -0.237 6.237 12 C -0.003 4.003 13 C -0.132 4.132 14 C -0.008 4.008 15 C -0.584 4.584 16 H 0.078 0.922 17 C -0.195 4.195 18 N -0.571 5.571 19 Si 0.789 3.211 20 H -0.191 1.191 21 H -0.207 1.207 22 H -0.194 1.194 23 H 0.104 0.896 24 H 0.114 0.886 25 H 0.113 0.887 26 H 0.263 0.737 27 H 0.154 0.846 28 H 0.174 0.826 29 H 0.172 0.828 30 H 0.152 0.848 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.020 0.980 36 H 0.015 0.985 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.526 5.702 -19.876 21.403 hybrid contribution 0.247 -0.302 1.198 1.260 sum 5.772 5.400 -18.678 20.281 Atomic orbital electron populations 1.20767 0.84887 1.05067 1.04387 1.23992 0.97352 0.88041 0.91002 1.76546 0.91706 1.24586 1.16598 1.88513 1.13244 1.36358 1.94925 1.18857 1.05071 0.95931 0.95231 1.21126 0.93386 0.96848 0.95959 1.21296 1.01895 0.94371 1.00069 1.21408 0.95488 1.00042 0.91672 1.21492 1.03082 0.97362 1.02379 1.19323 0.91354 0.93404 0.87112 1.86014 1.64483 1.47536 1.25627 1.22901 1.00386 0.91930 0.85125 1.21418 0.98736 0.99483 0.93592 1.18901 0.95682 0.94009 0.92181 1.21595 1.29191 1.05400 1.02236 0.92160 1.25936 0.97431 0.95094 1.01047 1.70074 1.44818 1.13990 1.28226 0.85504 0.79316 0.78223 0.78054 1.19069 1.20713 1.19352 0.89571 0.88598 0.88665 0.73690 0.84566 0.82571 0.82835 0.84819 0.91217 0.92314 0.92787 0.91758 0.97951 0.98458 0.92639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.99 10.04 71.24 0.72 -1.28 16 2 C 0.19 5.07 6.13 45.35 0.28 5.34 16 3 N -0.35 -9.81 12.12 -42.97 -0.52 -10.33 16 4 O -0.42 -10.92 13.92 -38.79 -0.54 -11.46 16 5 C -0.15 -4.13 4.78 -20.05 -0.10 -4.22 16 6 C -0.05 -1.23 9.44 22.52 0.21 -1.02 16 7 C -0.16 -3.05 10.02 22.24 0.22 -2.82 16 8 C -0.07 -1.42 10.03 22.30 0.22 -1.19 16 9 C -0.22 -5.99 9.03 22.33 0.20 -5.79 16 10 C 0.14 4.14 6.69 22.81 0.15 4.29 16 11 O -0.32 -11.07 9.44 -90.90 -0.86 -11.93 16 12 C 0.07 2.50 4.74 71.98 0.34 2.85 16 13 C -0.09 -3.95 5.52 30.59 0.17 -3.78 16 14 C 0.03 1.53 4.97 29.85 0.15 1.67 16 15 C -0.55 -30.94 9.11 25.60 0.23 -30.70 16 16 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 17 C 0.00 0.18 5.46 84.65 0.46 0.64 16 18 N -0.93 -55.91 13.29 21.45 0.28 -55.62 16 19 Si 0.96 43.91 29.54 68.60 2.03 45.94 16 20 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 21 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 22 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 23 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 24 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.09 1.73 8.11 -2.39 -0.02 1.72 16 26 H 0.41 6.57 9.28 -74.06 -0.69 5.89 16 27 H 0.14 2.67 8.06 -2.91 -0.02 2.64 16 28 H 0.16 1.95 8.06 -2.91 -0.02 1.93 16 29 H 0.15 2.25 8.06 -2.91 -0.02 2.23 16 30 H 0.13 3.48 6.30 -2.91 -0.02 3.46 16 31 H 0.07 2.30 7.66 -2.39 -0.02 2.28 16 32 H 0.06 2.04 7.66 -2.39 -0.02 2.02 16 33 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 35 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 36 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 37 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 Total: -1.00 -69.25 323.68 4.04 -65.21 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: 0.38 Total: 14.21 kcal Atomic # 6 Polarization: -39.28 SS G_CDS: 3.27 Total: -36.02 kcal Atomic # 7 Polarization: -65.72 SS G_CDS: -0.24 Total: -65.95 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: -1.40 Total: -23.39 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -69.25 4.04 -65.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049578649.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.830 kcal (2) G-P(sol) polarization free energy of solvation -69.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds