Wall clock time and date at job start Mon Mar 30 2020 07:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42899 * 109.47106 * 2 1 4 4 C 1.35972 * 116.99935 * 180.02562 * 3 2 1 5 5 C 1.38551 * 120.08567 * 359.97438 * 4 3 2 6 6 C 1.38241 * 120.01481 * 179.97438 * 5 4 3 7 7 C 1.38277 * 120.18218 * 0.02562 * 6 5 4 8 8 C 1.38202 * 120.16497 * 359.97438 * 7 6 5 9 9 C 1.38728 * 119.97984 * 0.02562 * 8 7 6 10 10 N 1.40130 * 120.08862 * 180.02562 * 9 8 7 11 11 C 1.34778 * 119.99758 * 24.80013 * 10 9 8 12 12 O 1.21294 * 120.00302 * 5.53846 * 11 10 9 13 13 C 1.50702 * 119.99899 * 185.54007 * 11 10 9 14 14 H 1.09000 * 109.46756 * 300.00406 * 13 11 10 15 15 C 1.53005 * 109.47164 * 59.99962 * 13 11 10 16 16 C 1.50697 * 109.47129 * 179.97438 * 13 11 10 17 17 H 1.07993 * 120.00247 * 0.02562 * 16 13 11 18 18 C 1.37879 * 120.00010 * 179.97438 * 16 13 11 19 19 N 1.31516 * 119.99648 * 359.97438 * 18 16 13 20 20 Si 1.86794 * 120.00121 * 180.02562 * 18 16 13 21 21 H 1.48504 * 109.47349 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.47252 * 119.99845 * 20 18 16 23 23 H 1.48496 * 109.47310 * 240.00003 * 20 18 16 24 24 H 1.08996 * 109.46919 * 299.99631 * 1 2 3 25 25 H 1.09001 * 109.46991 * 60.00348 * 1 2 3 26 26 H 1.09000 * 109.46532 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47356 * 240.00000 * 2 1 3 28 28 H 1.08993 * 109.47416 * 120.00127 * 2 1 3 29 29 H 1.08002 * 119.98859 * 359.96029 * 5 4 3 30 30 H 1.07994 * 119.91050 * 179.72366 * 6 5 4 31 31 H 1.07997 * 119.92262 * 179.97438 * 7 6 5 32 32 H 1.08000 * 120.01058 * 179.97438 * 8 7 6 33 33 H 0.96998 * 119.99939 * 204.80846 * 10 9 8 34 34 H 1.08996 * 109.47331 * 59.99934 * 15 13 11 35 35 H 1.08995 * 109.46996 * 180.02562 * 15 13 11 36 36 H 1.09003 * 109.46771 * 299.99650 * 15 13 11 37 37 H 0.97005 * 119.99626 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3544 1.5254 -0.0005 5 6 4.2000 0.4279 -0.0005 6 6 5.5703 0.6107 -0.0016 7 6 6.1013 1.8874 -0.0022 8 6 5.2647 2.9875 -0.0022 9 6 3.8886 2.8119 -0.0011 10 7 3.0382 3.9257 -0.0017 11 6 3.4712 5.1038 -0.4928 12 8 4.5586 5.1761 -1.0252 13 6 2.6042 6.3313 -0.3803 14 1 1.6619 6.1594 -0.9006 15 6 2.3258 6.6257 1.0951 16 6 3.3144 7.5065 -1.0013 17 1 4.2952 7.3774 -1.4344 18 6 2.7115 8.7464 -1.0174 19 7 1.5164 8.9032 -0.4913 20 14 3.5915 10.2029 -1.7876 21 1 4.9122 9.7653 -2.3068 22 1 2.7743 10.7405 -2.9051 23 1 3.7872 11.2608 -0.7641 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.7885 -0.5707 0.0006 30 1 6.2278 -0.2459 0.0029 31 1 7.1724 2.0254 -0.0026 32 1 5.6821 3.9836 -0.0022 33 1 2.1381 3.8488 0.3515 34 1 3.2681 6.7975 1.6154 35 1 1.6984 7.5133 1.1763 36 1 1.8123 5.7758 1.5445 37 1 1.0921 9.7755 -0.5029 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049822416.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:53 Heat of formation + Delta-G solvation = -54.357670 kcal Electronic energy + Delta-G solvation = -19634.152274 eV Core-core repulsion = 16569.714426 eV Total energy + Delta-G solvation = -3064.437848 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.41751 -38.86010 -37.11517 -34.14603 -33.80181 -31.85775 -30.75772 -29.73389 -28.49017 -25.16117 -24.20814 -23.24849 -21.77465 -21.44919 -19.26653 -18.29513 -17.06863 -16.26242 -16.12588 -15.87424 -15.32725 -14.69676 -14.44698 -14.24955 -13.90857 -13.38555 -13.17720 -12.91020 -12.71225 -12.55631 -12.05364 -11.86507 -11.61278 -11.40322 -11.08254 -10.99833 -10.78536 -10.72953 -10.67494 -10.33802 -9.99304 -9.93523 -8.99179 -8.66617 -8.41279 -8.27328 -7.41915 -6.04655 -4.08138 1.54167 1.60190 3.17445 3.32315 3.39884 3.47759 3.52561 3.78256 4.11495 4.46719 4.78673 4.79441 5.00094 5.09054 5.12340 5.27781 5.29311 5.44358 5.62212 5.64742 5.74409 5.89668 6.00352 6.21037 6.36335 6.46369 6.62035 6.73254 6.80890 6.87424 6.92255 7.14064 7.44060 7.58261 7.73238 7.95458 8.09526 8.35571 9.00492 9.07733 9.57454 11.03082 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.024748 B = 0.005003 C = 0.004333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.154949 B = 5595.438395 C = 6459.861168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.058 3.942 3 O -0.317 6.317 4 C 0.085 3.915 5 C -0.190 4.190 6 C -0.117 4.117 7 C -0.133 4.133 8 C -0.104 4.104 9 C 0.143 3.857 10 N -0.676 5.676 11 C 0.519 3.481 12 O -0.525 6.525 13 C 0.031 3.969 14 H 0.055 0.945 15 C -0.133 4.133 16 C -0.501 4.501 17 H 0.076 0.924 18 C 0.058 3.942 19 N -0.896 5.896 20 Si 0.900 3.100 21 H -0.271 1.271 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.075 0.925 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.125 0.875 30 H 0.119 0.881 31 H 0.123 0.877 32 H 0.155 0.845 33 H 0.411 0.589 34 H 0.032 0.968 35 H 0.095 0.905 36 H 0.013 0.987 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.115 -17.822 3.503 18.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.017 4.017 3 O -0.232 6.232 4 C 0.038 3.962 5 C -0.209 4.209 6 C -0.136 4.136 7 C -0.152 4.152 8 C -0.124 4.124 9 C 0.046 3.954 10 N -0.321 5.321 11 C 0.310 3.690 12 O -0.400 6.400 13 C 0.010 3.990 14 H 0.073 0.927 15 C -0.191 4.191 16 C -0.540 4.540 17 H 0.094 0.906 18 C -0.142 4.142 19 N -0.535 5.535 20 Si 0.728 3.272 21 H -0.195 1.195 22 H -0.210 1.210 23 H -0.210 1.210 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.094 0.906 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.142 0.858 30 H 0.137 0.863 31 H 0.141 0.859 32 H 0.172 0.828 33 H 0.246 0.754 34 H 0.052 0.948 35 H 0.114 0.886 36 H 0.032 0.968 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.569 -17.374 3.140 17.665 hybrid contribution -0.035 0.375 -0.215 0.434 sum 0.534 -16.999 2.925 17.257 Atomic orbital electron populations 1.21776 0.92853 1.02593 1.03757 1.22705 0.95726 0.82226 1.01045 1.86027 1.18781 1.28960 1.89383 1.18676 0.82502 0.92732 1.02294 1.20932 0.94215 0.97082 1.08706 1.20793 0.94098 0.97163 1.01557 1.20973 0.99708 0.92001 1.02516 1.21438 0.90683 1.01266 0.99039 1.17388 0.90740 0.84488 1.02786 1.43979 1.16944 1.08795 1.62364 1.22279 0.88131 0.83962 0.74604 1.90488 1.22901 1.84878 1.41740 1.18910 0.95256 0.88839 0.96018 0.92690 1.21757 1.00586 1.01591 0.95185 1.21160 1.04046 0.91860 1.36929 0.90606 1.24951 0.94950 0.98909 0.95410 1.69883 1.14349 1.23801 1.45468 0.86381 0.79947 0.81962 0.78875 1.19526 1.21042 1.21027 0.91433 0.91395 0.90613 0.92308 0.92331 0.85754 0.86286 0.85926 0.82790 0.75352 0.94849 0.88633 0.96782 0.92963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 10.28 37.16 0.38 -0.88 16 2 C 0.06 0.58 5.46 37.16 0.20 0.79 16 3 O -0.32 -4.52 9.55 -19.65 -0.19 -4.71 16 4 C 0.09 1.32 6.70 -39.07 -0.26 1.06 16 5 C -0.19 -2.49 9.04 -39.46 -0.36 -2.84 16 6 C -0.12 -1.49 10.04 -39.57 -0.40 -1.89 16 7 C -0.13 -1.93 10.04 -39.58 -0.40 -2.33 16 8 C -0.10 -1.86 8.72 -39.41 -0.34 -2.20 16 9 C 0.14 2.59 6.45 -83.49 -0.54 2.05 16 10 N -0.68 -13.08 5.14 -9.74 -0.05 -13.13 16 11 C 0.52 12.04 6.96 -10.98 -0.08 11.96 16 12 O -0.53 -13.45 12.63 5.55 0.07 -13.38 16 13 C 0.03 0.77 2.64 -92.92 -0.24 0.53 16 14 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 15 C -0.13 -3.07 8.87 37.16 0.33 -2.74 16 16 C -0.50 -14.15 8.37 -34.44 -0.29 -14.44 16 17 H 0.08 2.25 6.75 -52.49 -0.35 1.89 16 18 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 19 N -0.90 -25.07 11.32 55.43 0.63 -24.44 16 20 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 21 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 24 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.54 7.66 -51.93 -0.40 0.14 16 28 H 0.06 0.51 7.66 -51.93 -0.40 0.11 16 29 H 0.12 1.27 6.30 -52.49 -0.33 0.94 16 30 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 31 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 32 H 0.15 3.10 5.79 -52.49 -0.30 2.80 16 33 H 0.41 7.15 7.94 -40.82 -0.32 6.82 16 34 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.10 2.41 6.07 -51.93 -0.32 2.10 16 36 H 0.01 0.26 7.70 -51.93 -0.40 -0.14 16 37 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 309.38 15.07 4.66 4.66 Total: -1.00 -30.95 309.38 -6.90 -37.85 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -4.92 Total: 5.84 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: -2.08 Total: -9.42 kcal Atomic # 7 Polarization: -38.15 SS G_CDS: 0.58 Total: -37.57 kcal Atomic # 8 Polarization: -17.98 SS G_CDS: -0.12 Total: -18.09 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.95 -6.90 -37.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049822416.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.503 kcal (2) G-P(sol) polarization free energy of solvation -30.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds