Wall clock time and date at job start Mon Mar 30 2020 07:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42899 * 109.47106 * 2 1 4 4 C 1.35972 * 116.99935 * 180.02562 * 3 2 1 5 5 C 1.38551 * 120.08567 * 359.97438 * 4 3 2 6 6 C 1.38241 * 120.01481 * 179.97438 * 5 4 3 7 7 C 1.38277 * 120.18218 * 0.02562 * 6 5 4 8 8 C 1.38202 * 120.16497 * 359.97438 * 7 6 5 9 9 C 1.38728 * 119.97984 * 0.02562 * 8 7 6 10 10 N 1.40130 * 120.08862 * 180.02562 * 9 8 7 11 11 C 1.34778 * 119.99758 * 24.80013 * 10 9 8 12 12 O 1.21294 * 120.00302 * 5.53846 * 11 10 9 13 13 C 1.50702 * 119.99899 * 185.54007 * 11 10 9 14 14 H 1.09000 * 109.46756 * 300.00406 * 13 11 10 15 15 C 1.53005 * 109.47164 * 59.99962 * 13 11 10 16 16 C 1.50697 * 109.47129 * 179.97438 * 13 11 10 17 17 H 1.07993 * 120.00247 * 0.02562 * 16 13 11 18 18 C 1.37879 * 120.00010 * 179.97438 * 16 13 11 19 19 N 1.31516 * 119.99648 * 359.97438 * 18 16 13 20 20 Si 1.86794 * 120.00121 * 180.02562 * 18 16 13 21 21 H 1.48504 * 109.47349 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.47252 * 119.99845 * 20 18 16 23 23 H 1.48496 * 109.47310 * 240.00003 * 20 18 16 24 24 H 1.08996 * 109.46919 * 299.99631 * 1 2 3 25 25 H 1.09001 * 109.46991 * 60.00348 * 1 2 3 26 26 H 1.09000 * 109.46532 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47356 * 240.00000 * 2 1 3 28 28 H 1.08993 * 109.47416 * 120.00127 * 2 1 3 29 29 H 1.08002 * 119.98859 * 359.96029 * 5 4 3 30 30 H 1.07994 * 119.91050 * 179.72366 * 6 5 4 31 31 H 1.07997 * 119.92262 * 179.97438 * 7 6 5 32 32 H 1.08000 * 120.01058 * 179.97438 * 8 7 6 33 33 H 0.96998 * 119.99939 * 204.80846 * 10 9 8 34 34 H 1.08996 * 109.47331 * 59.99934 * 15 13 11 35 35 H 1.08995 * 109.46996 * 180.02562 * 15 13 11 36 36 H 1.09003 * 109.46771 * 299.99650 * 15 13 11 37 37 H 0.97005 * 119.99626 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3544 1.5254 -0.0005 5 6 4.2000 0.4279 -0.0005 6 6 5.5703 0.6107 -0.0016 7 6 6.1013 1.8874 -0.0022 8 6 5.2647 2.9875 -0.0022 9 6 3.8886 2.8119 -0.0011 10 7 3.0382 3.9257 -0.0017 11 6 3.4712 5.1038 -0.4928 12 8 4.5586 5.1761 -1.0252 13 6 2.6042 6.3313 -0.3803 14 1 1.6619 6.1594 -0.9006 15 6 2.3258 6.6257 1.0951 16 6 3.3144 7.5065 -1.0013 17 1 4.2952 7.3774 -1.4344 18 6 2.7115 8.7464 -1.0174 19 7 1.5164 8.9032 -0.4913 20 14 3.5915 10.2029 -1.7876 21 1 4.9122 9.7653 -2.3068 22 1 2.7743 10.7405 -2.9051 23 1 3.7872 11.2608 -0.7641 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.7885 -0.5707 0.0006 30 1 6.2278 -0.2459 0.0029 31 1 7.1724 2.0254 -0.0026 32 1 5.6821 3.9836 -0.0022 33 1 2.1381 3.8488 0.3515 34 1 3.2681 6.7975 1.6154 35 1 1.6984 7.5133 1.1763 36 1 1.8123 5.7758 1.5445 37 1 1.0921 9.7755 -0.5029 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049822416.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:53 Heat of formation + Delta-G solvation = -73.654250 kcal Electronic energy + Delta-G solvation = -19634.989037 eV Core-core repulsion = 16569.714426 eV Total energy + Delta-G solvation = -3065.274611 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.73806 -40.32149 -38.28893 -35.84831 -35.67237 -32.80926 -32.53951 -30.95059 -29.77223 -27.24305 -25.31290 -24.77594 -22.96187 -22.74010 -20.92911 -19.49107 -18.53160 -18.08167 -17.57848 -17.05787 -16.75688 -16.34830 -15.89674 -15.67052 -15.27073 -14.73477 -14.62940 -14.24528 -14.17849 -13.58989 -13.35618 -13.07365 -12.97970 -12.84650 -12.71656 -12.60562 -12.51034 -12.25531 -12.02968 -11.99137 -11.60901 -11.42386 -11.07698 -10.59827 -10.31397 -9.53670 -8.71485 -8.17163 -6.28110 0.32212 0.44993 1.39659 1.41405 1.55024 1.82263 2.12506 2.31311 2.47779 2.87805 3.12683 3.86650 4.02312 4.09114 4.10940 4.25393 4.36586 4.42814 4.49652 4.60410 4.69736 4.77960 4.89625 4.94645 4.97334 4.98046 5.16183 5.28550 5.35360 5.44935 5.56832 5.63251 5.71118 5.88665 5.91443 6.15380 6.48682 6.60214 6.80954 7.31241 7.42775 8.89284 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.024748 B = 0.005003 C = 0.004333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.154949 B = 5595.438395 C = 6459.861168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.047 3.953 3 O -0.336 6.336 4 C 0.088 3.912 5 C -0.184 4.184 6 C -0.098 4.098 7 C -0.139 4.139 8 C -0.127 4.127 9 C 0.099 3.901 10 N -0.663 5.663 11 C 0.521 3.479 12 O -0.559 6.559 13 C 0.027 3.973 14 H 0.042 0.958 15 C -0.119 4.119 16 C -0.529 4.529 17 H 0.051 0.949 18 C 0.020 3.980 19 N -0.911 5.911 20 Si 0.959 3.041 21 H -0.279 1.279 22 H -0.274 1.274 23 H -0.273 1.273 24 H 0.061 0.939 25 H 0.055 0.945 26 H 0.104 0.896 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.162 0.838 30 H 0.162 0.838 31 H 0.143 0.857 32 H 0.121 0.879 33 H 0.418 0.582 34 H 0.025 0.975 35 H 0.075 0.925 36 H 0.047 0.953 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.149 -20.489 3.864 20.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.027 4.027 3 O -0.251 6.251 4 C 0.041 3.959 5 C -0.203 4.203 6 C -0.117 4.117 7 C -0.158 4.158 8 C -0.147 4.147 9 C 0.004 3.996 10 N -0.307 5.307 11 C 0.311 3.689 12 O -0.437 6.437 13 C 0.006 3.994 14 H 0.060 0.940 15 C -0.177 4.177 16 C -0.567 4.567 17 H 0.070 0.930 18 C -0.179 4.179 19 N -0.550 5.550 20 Si 0.784 3.216 21 H -0.204 1.204 22 H -0.200 1.200 23 H -0.198 1.198 24 H 0.081 0.919 25 H 0.075 0.925 26 H 0.122 0.878 27 H 0.090 0.910 28 H 0.096 0.904 29 H 0.180 0.820 30 H 0.179 0.821 31 H 0.161 0.839 32 H 0.138 0.862 33 H 0.255 0.745 34 H 0.044 0.956 35 H 0.094 0.906 36 H 0.066 0.934 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.573 -20.088 3.526 20.403 hybrid contribution -0.069 1.020 -0.308 1.068 sum 0.504 -19.068 3.218 19.344 Atomic orbital electron populations 1.21819 0.91826 1.04197 1.02945 1.23086 0.96618 0.80452 1.02555 1.86022 1.18099 1.31868 1.89135 1.18751 0.83596 0.92195 1.01381 1.21395 0.94160 0.97906 1.06868 1.21288 0.94647 0.97464 0.98304 1.21234 1.00449 0.91934 1.02172 1.21316 0.91406 1.01039 1.00948 1.17622 0.90768 0.85026 1.06199 1.43569 1.17349 1.08312 1.61494 1.21817 0.87390 0.84757 0.74898 1.90471 1.24067 1.85608 1.43581 1.18822 0.94608 0.89211 0.96726 0.93998 1.21564 1.00041 1.02007 0.94127 1.21278 1.03599 0.93729 1.38101 0.93029 1.25619 0.95672 1.00988 0.95669 1.69961 1.14965 1.24578 1.45528 0.85489 0.78524 0.79067 0.78478 1.20355 1.19976 1.19824 0.91944 0.92538 0.87765 0.91003 0.90370 0.82022 0.82054 0.83912 0.86164 0.74525 0.95589 0.90648 0.93421 0.92509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 10.28 71.98 0.74 -1.38 16 2 C 0.05 0.79 5.46 71.98 0.39 1.19 16 3 O -0.34 -9.03 9.55 -93.23 -0.89 -9.92 16 4 C 0.09 2.59 6.70 22.60 0.15 2.74 16 5 C -0.18 -4.11 9.04 22.35 0.20 -3.91 16 6 C -0.10 -2.12 10.04 22.28 0.22 -1.89 16 7 C -0.14 -3.83 10.04 22.27 0.22 -3.60 16 8 C -0.13 -4.65 8.72 22.38 0.20 -4.45 16 9 C 0.10 3.63 6.45 38.19 0.25 3.88 16 10 N -0.66 -26.44 5.14 -303.12 -1.56 -28.00 16 11 C 0.52 25.35 6.96 87.66 0.61 25.96 16 12 O -0.56 -30.43 12.63 -3.07 -0.04 -30.47 16 13 C 0.03 1.43 2.64 -12.28 -0.03 1.40 16 14 H 0.04 2.27 8.14 -2.39 -0.02 2.25 16 15 C -0.12 -5.64 8.87 71.98 0.64 -5.00 16 16 C -0.53 -31.08 8.37 25.60 0.21 -30.86 16 17 H 0.05 3.23 6.75 -2.91 -0.02 3.21 16 18 C 0.02 1.12 5.30 84.66 0.45 1.56 16 19 N -0.91 -51.65 11.32 21.45 0.24 -51.41 16 20 Si 0.96 45.32 29.54 68.60 2.03 47.35 16 21 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 22 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 23 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 24 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.07 1.03 7.66 -2.38 -0.02 1.01 16 28 H 0.08 1.02 7.66 -2.39 -0.02 1.00 16 29 H 0.16 2.38 6.30 -2.91 -0.02 2.36 16 30 H 0.16 2.16 8.06 -2.91 -0.02 2.14 16 31 H 0.14 3.22 8.06 -2.91 -0.02 3.20 16 32 H 0.12 5.20 5.79 -2.91 -0.02 5.18 16 33 H 0.42 14.85 7.94 -92.71 -0.74 14.11 16 34 H 0.02 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.07 3.88 6.07 -2.39 -0.01 3.87 16 36 H 0.05 1.87 7.70 -2.39 -0.02 1.85 16 37 H 0.27 14.17 8.31 -92.70 -0.77 13.40 16 Total: -1.00 -69.87 309.38 4.38 -65.49 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: 0.35 Total: 21.34 kcal Atomic # 6 Polarization: -18.64 SS G_CDS: 4.25 Total: -14.38 kcal Atomic # 7 Polarization: -78.09 SS G_CDS: -1.31 Total: -79.41 kcal Atomic # 8 Polarization: -39.46 SS G_CDS: -0.93 Total: -40.39 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -69.87 4.38 -65.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049822416.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.166 kcal (2) G-P(sol) polarization free energy of solvation -69.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds