Wall clock time and date at job start Mon Mar 30 2020 07:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42909 * 109.46879 * 2 1 4 4 C 1.35971 * 116.99656 * 180.02562 * 3 2 1 5 5 C 1.38726 * 119.98524 * 0.29868 * 4 3 2 6 6 C 1.38085 * 120.01090 * 180.25757 * 5 4 3 7 7 C 1.38843 * 119.98622 * 359.44267 * 6 5 4 8 8 N 1.40117 * 120.01748 * 180.25383 * 7 6 5 9 9 C 1.34770 * 119.99902 * 144.90406 * 8 7 6 10 10 O 1.21298 * 120.00463 * 4.59749 * 9 8 7 11 11 C 1.50703 * 120.00207 * 184.59265 * 9 8 7 12 12 H 1.08999 * 109.46819 * 60.00375 * 11 9 8 13 13 C 1.52999 * 109.46947 * 300.00656 * 11 9 8 14 14 C 1.50694 * 109.47553 * 180.02562 * 11 9 8 15 15 H 1.08002 * 120.00140 * 25.09532 * 14 11 9 16 16 C 1.37875 * 120.00082 * 205.09686 * 14 11 9 17 17 N 1.31516 * 119.99820 * 185.01146 * 16 14 11 18 18 Si 1.86799 * 120.00200 * 5.00315 * 16 14 11 19 19 H 1.48505 * 109.46620 * 94.95515 * 18 16 14 20 20 H 1.48493 * 109.47363 * 214.95237 * 18 16 14 21 21 H 1.48501 * 109.47140 * 334.96174 * 18 16 14 22 22 C 1.38847 * 119.97225 * 0.28237 * 7 6 5 23 23 C 1.38090 * 119.98347 * 359.97438 * 22 7 6 24 24 H 1.09001 * 109.47388 * 300.00194 * 1 2 3 25 25 H 1.09002 * 109.47660 * 60.00067 * 1 2 3 26 26 H 1.08998 * 109.47169 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47092 * 240.00259 * 2 1 3 28 28 H 1.08995 * 109.47015 * 119.99924 * 2 1 3 29 29 H 1.08000 * 119.99326 * 359.97438 * 5 4 3 30 30 H 1.07999 * 120.00743 * 179.71852 * 6 5 4 31 31 H 0.96994 * 119.99491 * 324.91224 * 8 7 6 32 32 H 1.09000 * 109.47011 * 185.00468 * 13 11 9 33 33 H 1.09001 * 109.47256 * 305.00226 * 13 11 9 34 34 H 1.09002 * 109.47730 * 65.00366 * 13 11 9 35 35 H 0.97000 * 119.99782 * 179.97438 * 17 16 14 36 36 H 1.08001 * 120.00762 * 180.02562 * 22 7 6 37 37 H 1.07999 * 119.99280 * 180.02562 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3543 1.5255 -0.0005 5 6 4.1990 0.4251 -0.0073 6 6 5.5681 0.6054 -0.0025 7 6 6.0991 1.8883 -0.0026 8 7 7.4881 2.0719 -0.0030 9 6 8.0307 3.1070 -0.6742 10 8 7.3134 3.9267 -1.2080 11 6 9.5288 3.2463 -0.7615 12 1 9.9475 2.3668 -1.2507 13 6 10.1121 3.3725 0.6473 14 6 9.8733 4.4773 -1.5595 15 1 9.1715 5.2960 -1.6193 16 6 11.0844 4.5584 -2.2133 17 7 11.4270 5.6698 -2.8274 18 14 12.2388 3.0899 -2.2268 19 1 12.0230 2.3021 -3.4670 20 1 13.6449 3.5651 -2.1807 21 1 11.9660 2.2349 -1.0436 22 6 5.2530 2.9892 -0.0015 23 6 3.8841 2.8075 -0.0010 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.7858 -0.5727 -0.0118 30 1 6.2256 -0.2513 -0.0032 31 1 8.0591 1.4540 0.4796 32 1 11.1835 3.5621 0.5813 33 1 9.6284 4.1988 1.1682 34 1 9.9402 2.4466 1.1962 35 1 12.2793 5.7270 -3.2871 36 1 5.6654 3.9873 -0.0020 37 1 3.2259 3.6638 -0.0006 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049822419.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:01 Heat of formation + Delta-G solvation = -53.158814 kcal Electronic energy + Delta-G solvation = -19150.681402 eV Core-core repulsion = 16086.295541 eV Total energy + Delta-G solvation = -3064.385862 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.33107 -39.25650 -37.16979 -33.96894 -33.75557 -31.91510 -31.26048 -30.78740 -28.16038 -25.26067 -24.27552 -23.25185 -22.20049 -21.28824 -19.30809 -18.27421 -17.34604 -16.98318 -16.20574 -16.03131 -15.46879 -14.61666 -14.51260 -14.02274 -13.58566 -13.52828 -13.30081 -13.23751 -12.90350 -12.64961 -12.42774 -12.19988 -12.05216 -11.82834 -11.51270 -11.16972 -10.99475 -10.76166 -10.68702 -10.42846 -9.81322 -9.52561 -9.19073 -8.96635 -8.68404 -8.58669 -7.48107 -6.09587 -4.09731 1.45382 1.53580 3.15516 3.21001 3.28699 3.31889 3.42061 3.65087 3.99196 4.35543 4.68463 4.70990 4.90393 4.95382 5.02817 5.19752 5.24329 5.43812 5.47707 5.52694 5.70123 5.76754 5.85491 6.08410 6.11174 6.13868 6.32592 6.38159 6.45320 6.57859 6.73933 6.79366 7.12877 7.16843 7.47572 7.50954 7.98144 8.48731 8.95296 9.07784 9.49315 11.03387 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.045938 B = 0.003770 C = 0.003672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.373095 B = 7425.399956 C = 7623.157314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.319 6.319 4 C 0.101 3.899 5 C -0.191 4.191 6 C -0.117 4.117 7 C 0.126 3.874 8 N -0.689 5.689 9 C 0.521 3.479 10 O -0.510 6.510 11 C -0.002 4.002 12 H 0.056 0.944 13 C -0.136 4.136 14 C -0.502 4.502 15 H 0.089 0.911 16 C 0.073 3.927 17 N -0.893 5.893 18 Si 0.868 3.132 19 H -0.277 1.277 20 H -0.285 1.285 21 H -0.260 1.260 22 C -0.084 4.084 23 C -0.131 4.131 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.075 0.925 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.126 0.874 30 H 0.125 0.875 31 H 0.405 0.595 32 H 0.058 0.942 33 H 0.051 0.949 34 H 0.026 0.974 35 H 0.265 0.735 36 H 0.149 0.851 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.887 -14.378 8.522 22.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.234 6.234 4 C 0.055 3.945 5 C -0.210 4.210 6 C -0.137 4.137 7 C 0.031 3.969 8 N -0.336 5.336 9 C 0.311 3.689 10 O -0.383 6.383 11 C -0.024 4.024 12 H 0.074 0.926 13 C -0.195 4.195 14 C -0.540 4.540 15 H 0.107 0.893 16 C -0.129 4.129 17 N -0.531 5.531 18 Si 0.695 3.305 19 H -0.203 1.203 20 H -0.211 1.211 21 H -0.184 1.184 22 C -0.104 4.104 23 C -0.150 4.150 24 H 0.084 0.916 25 H 0.085 0.915 26 H 0.094 0.906 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.143 0.857 30 H 0.143 0.857 31 H 0.240 0.760 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.045 0.955 35 H 0.075 0.925 36 H 0.166 0.834 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -15.329 -13.493 7.973 21.923 hybrid contribution 1.134 -1.399 0.044 1.802 sum -14.195 -14.892 8.017 22.081 Atomic orbital electron populations 1.21768 0.93007 1.02628 1.03488 1.22712 0.95642 0.82496 1.01193 1.86064 1.19322 1.28703 1.89297 1.18910 0.81950 0.94155 0.99450 1.20918 0.93547 0.97756 1.08759 1.20682 0.94676 0.95642 1.02747 1.17844 0.84235 0.93234 1.01581 1.44057 1.04434 1.31767 1.53335 1.21863 0.92752 0.78883 0.75411 1.90579 1.62972 1.40445 1.44290 1.19352 0.86540 1.00350 0.96113 0.92586 1.22029 1.01773 0.98999 0.96658 1.20786 1.03010 1.00876 1.29320 0.89261 1.24990 0.97433 0.95656 0.94866 1.69891 1.22541 1.25771 1.34855 0.87007 0.80747 0.83763 0.78984 1.20325 1.21084 1.18419 1.21260 0.91536 0.99965 0.97673 1.20352 0.94794 0.94687 1.05212 0.91598 0.91542 0.90583 0.92235 0.92277 0.85661 0.85697 0.75990 0.92271 0.92993 0.95456 0.92512 0.83369 0.85158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 10.28 37.16 0.38 -0.64 16 2 C 0.05 0.48 5.46 37.16 0.20 0.69 16 3 O -0.32 -4.05 10.14 -19.65 -0.20 -4.25 16 4 C 0.10 1.40 6.69 -39.22 -0.26 1.14 16 5 C -0.19 -2.39 9.03 -39.46 -0.36 -2.74 16 6 C -0.12 -1.56 9.96 -39.41 -0.39 -1.95 16 7 C 0.13 2.05 6.30 -83.62 -0.53 1.52 16 8 N -0.69 -11.55 5.27 -9.83 -0.05 -11.60 16 9 C 0.52 11.25 6.99 -10.99 -0.08 11.17 16 10 O -0.51 -12.85 13.06 5.54 0.07 -12.78 16 11 C 0.00 -0.04 2.18 -92.93 -0.20 -0.24 16 12 H 0.06 1.23 5.72 -51.93 -0.30 0.93 16 13 C -0.14 -2.65 8.61 37.16 0.32 -2.33 16 14 C -0.50 -14.16 8.52 -34.44 -0.29 -14.46 16 15 H 0.09 2.87 7.34 -52.49 -0.39 2.49 16 16 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 17 N -0.89 -27.25 13.96 55.43 0.77 -26.48 16 18 Si 0.87 20.41 26.35 -169.99 -4.48 15.94 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.26 -5.52 5.97 56.52 0.34 -5.19 16 22 C -0.08 -1.44 8.69 -39.41 -0.34 -1.78 16 23 C -0.13 -1.98 9.98 -39.46 -0.39 -2.38 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.48 7.64 -51.93 -0.40 0.09 16 28 H 0.06 0.45 7.67 -51.93 -0.40 0.05 16 29 H 0.13 1.22 6.29 -52.49 -0.33 0.89 16 30 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 31 H 0.40 5.42 8.22 -40.82 -0.34 5.08 16 32 H 0.06 1.18 6.90 -51.93 -0.36 0.82 16 33 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.03 0.41 7.61 -51.93 -0.40 0.02 16 35 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 36 H 0.15 2.82 6.22 -52.49 -0.33 2.50 16 37 H 0.13 1.78 8.06 -52.49 -0.42 1.35 16 LS Contribution 307.73 15.07 4.64 4.64 Total: -1.00 -33.03 307.73 -6.25 -39.28 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -4.96 Total: 5.30 kcal Atomic # 6 Polarization: -8.01 SS G_CDS: -2.04 Total: -10.04 kcal Atomic # 7 Polarization: -38.80 SS G_CDS: 0.72 Total: -38.08 kcal Atomic # 8 Polarization: -16.90 SS G_CDS: -0.13 Total: -17.03 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -4.48 Total: 15.94 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -33.03 -6.25 -39.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049822419.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.883 kcal (2) G-P(sol) polarization free energy of solvation -33.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds