Wall clock time and date at job start Mon Mar 30 2020 07:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42909 * 109.46879 * 2 1 4 4 C 1.35971 * 116.99656 * 180.02562 * 3 2 1 5 5 C 1.38726 * 119.98524 * 0.29868 * 4 3 2 6 6 C 1.38085 * 120.01090 * 180.25757 * 5 4 3 7 7 C 1.38843 * 119.98622 * 359.44267 * 6 5 4 8 8 N 1.40117 * 120.01748 * 180.25383 * 7 6 5 9 9 C 1.34770 * 119.99902 * 144.90406 * 8 7 6 10 10 O 1.21298 * 120.00463 * 4.59749 * 9 8 7 11 11 C 1.50703 * 120.00207 * 184.59265 * 9 8 7 12 12 H 1.08999 * 109.46819 * 60.00375 * 11 9 8 13 13 C 1.52999 * 109.46947 * 300.00656 * 11 9 8 14 14 C 1.50694 * 109.47553 * 180.02562 * 11 9 8 15 15 H 1.08002 * 120.00140 * 25.09532 * 14 11 9 16 16 C 1.37875 * 120.00082 * 205.09686 * 14 11 9 17 17 N 1.31516 * 119.99820 * 185.01146 * 16 14 11 18 18 Si 1.86799 * 120.00200 * 5.00315 * 16 14 11 19 19 H 1.48505 * 109.46620 * 94.95515 * 18 16 14 20 20 H 1.48493 * 109.47363 * 214.95237 * 18 16 14 21 21 H 1.48501 * 109.47140 * 334.96174 * 18 16 14 22 22 C 1.38847 * 119.97225 * 0.28237 * 7 6 5 23 23 C 1.38090 * 119.98347 * 359.97438 * 22 7 6 24 24 H 1.09001 * 109.47388 * 300.00194 * 1 2 3 25 25 H 1.09002 * 109.47660 * 60.00067 * 1 2 3 26 26 H 1.08998 * 109.47169 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47092 * 240.00259 * 2 1 3 28 28 H 1.08995 * 109.47015 * 119.99924 * 2 1 3 29 29 H 1.08000 * 119.99326 * 359.97438 * 5 4 3 30 30 H 1.07999 * 120.00743 * 179.71852 * 6 5 4 31 31 H 0.96994 * 119.99491 * 324.91224 * 8 7 6 32 32 H 1.09000 * 109.47011 * 185.00468 * 13 11 9 33 33 H 1.09001 * 109.47256 * 305.00226 * 13 11 9 34 34 H 1.09002 * 109.47730 * 65.00366 * 13 11 9 35 35 H 0.97000 * 119.99782 * 179.97438 * 17 16 14 36 36 H 1.08001 * 120.00762 * 180.02562 * 22 7 6 37 37 H 1.07999 * 119.99280 * 180.02562 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3543 1.5255 -0.0005 5 6 4.1990 0.4251 -0.0073 6 6 5.5681 0.6054 -0.0025 7 6 6.0991 1.8883 -0.0026 8 7 7.4881 2.0719 -0.0030 9 6 8.0307 3.1070 -0.6742 10 8 7.3134 3.9267 -1.2080 11 6 9.5288 3.2463 -0.7615 12 1 9.9475 2.3668 -1.2507 13 6 10.1121 3.3725 0.6473 14 6 9.8733 4.4773 -1.5595 15 1 9.1715 5.2960 -1.6193 16 6 11.0844 4.5584 -2.2133 17 7 11.4270 5.6698 -2.8274 18 14 12.2388 3.0899 -2.2268 19 1 12.0230 2.3021 -3.4670 20 1 13.6449 3.5651 -2.1807 21 1 11.9660 2.2349 -1.0436 22 6 5.2530 2.9892 -0.0015 23 6 3.8841 2.8075 -0.0010 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.7858 -0.5727 -0.0118 30 1 6.2256 -0.2513 -0.0032 31 1 8.0591 1.4540 0.4796 32 1 11.1835 3.5621 0.5813 33 1 9.6284 4.1988 1.1682 34 1 9.9402 2.4466 1.1962 35 1 12.2793 5.7270 -3.2871 36 1 5.6654 3.9873 -0.0020 37 1 3.2259 3.6638 -0.0006 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049822419.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:01 Heat of formation + Delta-G solvation = -76.469024 kcal Electronic energy + Delta-G solvation = -19151.692209 eV Core-core repulsion = 16086.295541 eV Total energy + Delta-G solvation = -3065.396668 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.58713 -40.54789 -38.38856 -35.71634 -35.34858 -33.33338 -32.56987 -31.85166 -29.36926 -27.19049 -25.28440 -24.69013 -23.25925 -22.55754 -20.86369 -19.27940 -19.10902 -18.56914 -17.56648 -16.98920 -16.70106 -16.37975 -16.00818 -15.39269 -15.05600 -14.63086 -14.51122 -14.37101 -14.23923 -14.01210 -13.73455 -13.26387 -13.17012 -13.06433 -12.92174 -12.64335 -12.53024 -12.21426 -11.88446 -11.68878 -11.63849 -11.23008 -10.82365 -10.73157 -10.47628 -9.97227 -8.67595 -8.26568 -6.34195 0.33928 0.35786 1.38364 1.40601 1.52240 1.80796 2.19793 2.34779 2.37550 2.81467 3.09303 3.82497 3.93675 4.04035 4.11004 4.21454 4.32011 4.41155 4.42071 4.45201 4.62647 4.71586 4.75475 4.84468 4.97861 5.01400 5.05175 5.12830 5.21910 5.33972 5.40464 5.49869 5.52973 5.59228 5.91802 6.25312 6.50075 6.62640 6.81500 7.26600 7.41839 8.91385 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.045938 B = 0.003770 C = 0.003672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.373095 B = 7425.399956 C = 7623.157314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.043 3.957 3 O -0.335 6.335 4 C 0.105 3.895 5 C -0.182 4.182 6 C -0.099 4.099 7 C 0.096 3.904 8 N -0.665 5.665 9 C 0.520 3.480 10 O -0.563 6.563 11 C -0.004 4.004 12 H 0.077 0.923 13 C -0.132 4.132 14 C -0.514 4.514 15 H 0.024 0.976 16 C 0.005 3.995 17 N -0.953 5.953 18 Si 0.946 3.054 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.212 1.212 22 C -0.106 4.106 23 C -0.148 4.148 24 H 0.062 0.938 25 H 0.058 0.942 26 H 0.102 0.898 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.164 0.836 30 H 0.162 0.838 31 H 0.425 0.575 32 H 0.056 0.944 33 H 0.038 0.962 34 H 0.080 0.920 35 H 0.267 0.733 36 H 0.114 0.886 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.049 -19.535 10.022 26.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.032 4.032 3 O -0.249 6.249 4 C 0.059 3.941 5 C -0.201 4.201 6 C -0.119 4.119 7 C 0.002 3.998 8 N -0.313 5.313 9 C 0.310 3.690 10 O -0.439 6.439 11 C -0.026 4.026 12 H 0.095 0.905 13 C -0.190 4.190 14 C -0.552 4.552 15 H 0.042 0.958 16 C -0.191 4.191 17 N -0.593 5.593 18 Si 0.767 3.233 19 H -0.200 1.200 20 H -0.211 1.211 21 H -0.134 1.134 22 C -0.126 4.126 23 C -0.168 4.168 24 H 0.081 0.919 25 H 0.077 0.923 26 H 0.120 0.880 27 H 0.089 0.911 28 H 0.095 0.905 29 H 0.181 0.819 30 H 0.180 0.820 31 H 0.264 0.736 32 H 0.075 0.925 33 H 0.058 0.942 34 H 0.099 0.901 35 H 0.076 0.924 36 H 0.132 0.868 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -15.529 -18.711 9.535 26.118 hybrid contribution 0.934 0.232 -0.411 1.047 sum -14.595 -18.479 9.124 25.253 Atomic orbital electron populations 1.21811 0.91707 1.04183 1.03003 1.23103 0.96787 0.80740 1.02546 1.86071 1.18463 1.31518 1.88893 1.18994 0.82988 0.93930 0.98144 1.21330 0.93014 0.98949 1.06830 1.21018 0.95547 0.95091 1.00223 1.18017 0.83475 0.94319 1.03973 1.43568 1.05193 1.30412 1.52097 1.21637 0.92297 0.79512 0.75595 1.90580 1.63819 1.42662 1.46881 1.19319 0.87764 0.98117 0.97364 0.90499 1.21922 1.01027 1.01377 0.94624 1.20942 1.02025 1.01655 1.30627 0.95808 1.26082 0.99594 0.99392 0.94034 1.70092 1.23540 1.29032 1.36645 0.85790 0.77240 0.79427 0.80845 1.19956 1.21057 1.13390 1.21066 0.92787 0.99116 0.99673 1.20370 0.94136 0.96049 1.06215 0.91922 0.92253 0.87969 0.91066 0.90516 0.81865 0.82034 0.73629 0.92516 0.94240 0.90084 0.92416 0.86845 0.85129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 10.28 71.98 0.74 -0.87 16 2 C 0.04 0.60 5.46 71.98 0.39 0.99 16 3 O -0.33 -7.81 10.14 -93.23 -0.95 -8.75 16 4 C 0.11 2.73 6.69 22.50 0.15 2.88 16 5 C -0.18 -3.84 9.03 22.35 0.20 -3.64 16 6 C -0.10 -2.25 9.96 22.38 0.22 -2.03 16 7 C 0.10 3.00 6.30 38.11 0.24 3.24 16 8 N -0.66 -21.11 5.27 -303.39 -1.60 -22.70 16 9 C 0.52 22.67 6.99 87.66 0.61 23.28 16 10 O -0.56 -30.24 13.06 -3.08 -0.04 -30.28 16 11 C 0.00 -0.18 2.18 -12.29 -0.03 -0.20 16 12 H 0.08 3.10 5.72 -2.39 -0.01 3.09 16 13 C -0.13 -4.78 8.61 71.98 0.62 -4.16 16 14 C -0.51 -30.36 8.52 25.60 0.22 -30.14 16 15 H 0.02 1.66 7.34 -2.91 -0.02 1.64 16 16 C 0.01 0.31 5.47 84.65 0.46 0.77 16 17 N -0.95 -61.08 13.96 21.45 0.30 -60.78 16 18 Si 0.95 41.38 26.35 68.60 1.81 43.19 16 19 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 20 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 21 H -0.21 -7.61 5.97 99.48 0.59 -7.01 16 22 C -0.11 -3.77 8.69 22.38 0.19 -3.57 16 23 C -0.15 -4.58 9.98 22.35 0.22 -4.36 16 24 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.07 0.86 7.64 -2.39 -0.02 0.84 16 28 H 0.08 0.83 7.67 -2.39 -0.02 0.82 16 29 H 0.16 2.20 6.29 -2.91 -0.02 2.19 16 30 H 0.16 2.51 8.06 -2.91 -0.02 2.49 16 31 H 0.42 9.65 8.22 -92.71 -0.76 8.89 16 32 H 0.06 2.09 6.90 -2.39 -0.02 2.07 16 33 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.08 2.08 7.61 -2.39 -0.02 2.06 16 35 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 36 H 0.11 4.78 6.22 -2.91 -0.02 4.76 16 37 H 0.13 3.81 8.06 -2.91 -0.02 3.79 16 Total: -1.00 -79.81 307.73 3.98 -75.83 By element: Atomic # 1 Polarization: 21.09 SS G_CDS: 0.21 Total: 21.30 kcal Atomic # 6 Polarization: -22.05 SS G_CDS: 4.25 Total: -17.80 kcal Atomic # 7 Polarization: -82.18 SS G_CDS: -1.30 Total: -83.48 kcal Atomic # 8 Polarization: -38.05 SS G_CDS: -0.99 Total: -39.03 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 1.81 Total: 43.19 kcal Total: -79.81 3.98 -75.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049822419.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.644 kcal (2) G-P(sol) polarization free energy of solvation -79.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds