Wall clock time and date at job start Mon Mar 30 2020 06:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.47433 * 2 1 4 4 C 1.50703 * 109.46743 * 119.99470 * 2 1 3 5 5 H 1.07998 * 119.99824 * 120.00203 * 4 2 1 6 6 C 1.37877 * 120.00176 * 299.99907 * 4 2 1 7 7 N 1.31521 * 119.99686 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00443 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47024 * 59.99498 * 8 6 4 10 10 H 1.48496 * 109.47610 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.46915 * 300.00223 * 8 6 4 12 12 N 1.46894 * 109.47085 * 239.99232 * 2 1 3 13 13 C 1.46892 * 111.00119 * 306.04915 * 12 2 1 14 14 C 1.46904 * 110.99920 * 70.00668 * 12 2 1 15 15 C 1.50699 * 109.46943 * 169.99950 * 14 12 2 16 16 C 1.38247 * 119.92634 * 270.01587 * 15 14 12 17 17 C 1.38240 * 120.14459 * 179.75199 * 16 15 14 18 18 C 1.38552 * 120.02633 * 0.42901 * 17 16 15 19 19 C 1.39265 * 119.82706 * 359.57585 * 18 17 16 20 20 C 1.38231 * 119.92969 * 89.99999 * 15 14 12 21 21 O 1.36496 * 108.64230 * 180.24572 * 19 18 17 22 22 C 1.43981 * 105.48444 * 342.72036 * 21 19 18 23 23 O 1.36505 * 131.53353 * 179.87931 * 18 17 16 24 24 H 1.09009 * 109.46626 * 60.00361 * 1 2 3 25 25 H 1.08992 * 109.47331 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47064 * 300.01272 * 1 2 3 27 27 H 0.97003 * 119.99548 * 180.02562 * 7 6 4 28 28 H 1.09007 * 109.47368 * 183.95362 * 13 12 2 29 29 H 1.09000 * 109.47317 * 303.95076 * 13 12 2 30 30 H 1.08993 * 109.47555 * 63.95589 * 13 12 2 31 31 H 1.08993 * 109.47082 * 49.99836 * 14 12 2 32 32 H 1.08998 * 109.46415 * 289.99750 * 14 12 2 33 33 H 1.07994 * 119.93290 * 0.02562 * 16 15 14 34 34 H 1.07997 * 119.99327 * 180.33354 * 17 16 15 35 35 H 1.08003 * 119.98943 * 0.02562 * 20 15 14 36 36 H 1.09007 * 110.56955 * 268.54960 * 22 21 19 37 37 H 1.09003 * 110.57719 * 145.67764 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1316 6 6 1.6992 -0.2392 2.4828 7 7 0.9435 0.8305 2.6033 8 14 2.3223 -1.1191 4.0081 9 1 3.8073 -1.1187 4.0079 10 1 1.8267 -0.4194 5.2205 11 1 1.8278 -2.5194 4.0085 12 7 2.0197 -0.6926 -1.1993 13 6 1.4343 -2.0355 -1.3075 14 6 1.7530 0.0970 -2.4090 15 6 2.4775 -0.5167 -3.5793 16 6 3.7659 -0.1155 -3.8802 17 6 4.4366 -0.6792 -4.9495 18 6 3.8149 -1.6420 -5.7282 19 6 2.5171 -2.0460 -5.4251 20 6 1.8526 -1.4796 -4.3493 21 8 2.1347 -2.9974 -6.3260 22 6 3.0556 -2.8771 -7.4263 23 8 4.2457 -2.3402 -6.8192 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5140 0.8899 27 1 0.7095 1.1622 3.4843 28 1 1.8664 -2.5523 -2.1646 29 1 1.6466 -2.5988 -0.3988 30 1 0.3556 -1.9521 -1.4397 31 1 2.1027 1.1186 -2.2604 32 1 0.6815 0.1051 -2.6087 33 1 4.2511 0.6366 -3.2759 34 1 5.4449 -0.3679 -5.1791 35 1 0.8460 -1.7910 -4.1121 36 1 2.6662 -2.1908 -8.1784 37 1 3.2572 -3.8541 -7.8657 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049822454.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:34 Heat of formation + Delta-G solvation = -24.565894 kcal Electronic energy + Delta-G solvation = -19729.584490 eV Core-core repulsion = 16666.438510 eV Total energy + Delta-G solvation = -3063.145980 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.11192 -38.54789 -36.57390 -36.25613 -32.88861 -30.91961 -30.28457 -28.35500 -26.84896 -25.56722 -25.21288 -23.67773 -22.79486 -21.49601 -19.25368 -17.88022 -17.45877 -17.26815 -16.27967 -15.98010 -15.15570 -14.57141 -14.45388 -14.29612 -13.82152 -13.79054 -13.20313 -13.01760 -12.94105 -12.77443 -12.47261 -11.85689 -11.42399 -11.26458 -11.03424 -10.98947 -10.78806 -10.62355 -10.58109 -10.45447 -10.03643 -9.82077 -8.91861 -8.71879 -8.37459 -7.93460 -7.16642 -6.00300 -4.03804 1.26027 1.33941 2.76977 3.33938 3.38012 3.41281 3.42491 3.68575 4.43227 4.55984 4.56284 4.76079 5.07632 5.12684 5.20559 5.28448 5.33204 5.41768 5.57513 5.86049 6.07404 6.15256 6.19092 6.26958 6.35447 6.38147 6.52710 6.67113 6.76012 6.83823 6.89566 7.10821 7.19186 7.44465 7.70694 7.84101 8.11566 8.37022 8.58047 9.01931 9.61161 11.06714 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.038540 B = 0.004151 C = 0.004111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.335765 B = 6744.211211 C = 6809.854055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.211 3.789 3 H 0.040 0.960 4 C -0.498 4.498 5 H 0.062 0.938 6 C 0.058 3.942 7 N -0.896 5.896 8 Si 0.897 3.103 9 H -0.277 1.277 10 H -0.289 1.289 11 H -0.278 1.278 12 N -0.528 5.528 13 C 0.031 3.969 14 C 0.091 3.909 15 C -0.048 4.048 16 C -0.090 4.090 17 C -0.100 4.100 18 C 0.017 3.983 19 C 0.026 3.974 20 C -0.094 4.094 21 O -0.312 6.312 22 C 0.214 3.786 23 O -0.313 6.313 24 H 0.007 0.993 25 H 0.031 0.969 26 H 0.088 0.912 27 H 0.260 0.740 28 H 0.045 0.955 29 H 0.073 0.927 30 H 0.017 0.983 31 H 0.081 0.919 32 H 0.037 0.963 33 H 0.141 0.859 34 H 0.132 0.868 35 H 0.131 0.869 36 H 0.079 0.921 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.661 -3.105 -17.043 17.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.105 3.895 3 H 0.058 0.942 4 C -0.537 4.537 5 H 0.080 0.920 6 C -0.143 4.143 7 N -0.535 5.535 8 Si 0.725 3.275 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.204 1.204 12 N -0.251 5.251 13 C -0.118 4.118 14 C -0.037 4.037 15 C -0.049 4.049 16 C -0.108 4.108 17 C -0.119 4.119 18 C -0.027 4.027 19 C -0.018 4.018 20 C -0.113 4.113 21 O -0.229 6.229 22 C 0.102 3.898 23 O -0.230 6.230 24 H 0.026 0.974 25 H 0.050 0.950 26 H 0.107 0.893 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.092 0.908 30 H 0.035 0.965 31 H 0.099 0.901 32 H 0.055 0.945 33 H 0.158 0.842 34 H 0.150 0.850 35 H 0.149 0.851 36 H 0.097 0.903 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 3.128 -3.239 -16.926 17.515 hybrid contribution -0.664 -0.557 0.529 1.016 sum 2.465 -3.796 -16.396 17.010 Atomic orbital electron populations 1.22417 1.00800 0.99480 1.00514 1.19345 0.89804 0.94515 0.85867 0.94227 1.21063 1.30532 1.12499 0.89565 0.91989 1.24917 0.95241 0.95144 0.98963 1.69877 1.37097 1.23038 1.23498 0.86580 0.79245 0.79597 0.82089 1.20225 1.21433 1.20401 1.62394 1.58859 1.02398 1.01468 1.22303 0.96060 0.91915 1.01475 1.21021 0.96626 0.97484 0.88617 1.19773 0.94497 0.95307 0.95347 1.20873 0.93940 1.00449 0.95559 1.20060 1.00835 0.95210 0.95749 1.19758 0.93090 0.97486 0.92375 1.19717 0.93727 0.92600 0.95752 1.20007 1.00567 0.97005 0.93718 1.87340 1.53754 1.52310 1.29447 1.25532 0.75127 1.00618 0.88538 1.87323 1.30819 1.65466 1.39393 0.97443 0.94956 0.89313 0.92972 0.93633 0.90828 0.96462 0.90083 0.94453 0.84160 0.85007 0.85145 0.90306 0.85588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.08 8.22 37.16 0.31 -3.77 16 2 C 0.21 5.14 2.31 -68.86 -0.16 4.99 16 3 H 0.04 1.05 7.93 -51.93 -0.41 0.64 16 4 C -0.50 -13.42 7.91 -34.44 -0.27 -13.69 16 5 H 0.06 1.69 7.12 -52.49 -0.37 1.31 16 6 C 0.06 1.58 5.30 -17.82 -0.09 1.49 16 7 N -0.90 -25.13 11.32 55.43 0.63 -24.51 16 8 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 9 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 N -0.53 -11.01 4.69 -237.74 -1.12 -12.13 16 13 C 0.03 0.61 8.26 60.06 0.50 1.10 16 14 C 0.09 1.57 4.69 -4.97 -0.02 1.55 16 15 C -0.05 -0.75 4.88 -104.62 -0.51 -1.26 16 16 C -0.09 -1.25 9.69 -39.58 -0.38 -1.64 16 17 C -0.10 -1.32 10.06 -39.46 -0.40 -1.72 16 18 C 0.02 0.24 7.15 -39.08 -0.28 -0.04 16 19 C 0.03 0.39 7.15 -39.08 -0.28 0.11 16 20 C -0.09 -1.41 7.97 -39.47 -0.31 -1.72 16 21 O -0.31 -4.27 11.40 -45.68 -0.52 -4.79 16 22 C 0.21 2.14 8.89 101.05 0.90 3.04 16 23 O -0.31 -4.12 11.40 -45.70 -0.52 -4.64 16 24 H 0.01 0.14 6.91 -51.92 -0.36 -0.22 16 25 H 0.03 0.74 6.42 -51.93 -0.33 0.41 16 26 H 0.09 2.32 6.07 -51.93 -0.32 2.01 16 27 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 28 H 0.04 0.82 6.16 -51.92 -0.32 0.50 16 29 H 0.07 1.56 6.76 -51.93 -0.35 1.21 16 30 H 0.02 0.33 6.46 -51.93 -0.34 -0.01 16 31 H 0.08 1.36 7.87 -51.93 -0.41 0.95 16 32 H 0.04 0.64 7.00 -51.93 -0.36 0.28 16 33 H 0.14 1.78 8.06 -52.49 -0.42 1.36 16 34 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 35 H 0.13 1.87 8.03 -52.48 -0.42 1.45 16 36 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.13 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 299.61 15.07 4.52 4.52 Total: -1.00 -29.47 299.61 -7.87 -37.34 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: -4.82 Total: -0.43 kcal Atomic # 6 Polarization: -10.54 SS G_CDS: -1.01 Total: -11.56 kcal Atomic # 7 Polarization: -36.15 SS G_CDS: -0.49 Total: -36.63 kcal Atomic # 8 Polarization: -8.39 SS G_CDS: -1.04 Total: -9.43 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.47 -7.87 -37.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049822454.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.776 kcal (2) G-P(sol) polarization free energy of solvation -29.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds