Wall clock time and date at job start Mon Mar 30 2020 06:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.47433 * 2 1 4 4 C 1.50703 * 109.46743 * 119.99470 * 2 1 3 5 5 H 1.07998 * 119.99824 * 120.00203 * 4 2 1 6 6 C 1.37877 * 120.00176 * 299.99907 * 4 2 1 7 7 N 1.31521 * 119.99686 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00443 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47024 * 59.99498 * 8 6 4 10 10 H 1.48496 * 109.47610 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.46915 * 300.00223 * 8 6 4 12 12 N 1.46894 * 109.47085 * 239.99232 * 2 1 3 13 13 C 1.46892 * 111.00119 * 306.04915 * 12 2 1 14 14 C 1.46904 * 110.99920 * 70.00668 * 12 2 1 15 15 C 1.50699 * 109.46943 * 169.99950 * 14 12 2 16 16 C 1.38247 * 119.92634 * 270.01587 * 15 14 12 17 17 C 1.38240 * 120.14459 * 179.75199 * 16 15 14 18 18 C 1.38552 * 120.02633 * 0.42901 * 17 16 15 19 19 C 1.39265 * 119.82706 * 359.57585 * 18 17 16 20 20 C 1.38231 * 119.92969 * 89.99999 * 15 14 12 21 21 O 1.36496 * 108.64230 * 180.24572 * 19 18 17 22 22 C 1.43981 * 105.48444 * 342.72036 * 21 19 18 23 23 O 1.36505 * 131.53353 * 179.87931 * 18 17 16 24 24 H 1.09009 * 109.46626 * 60.00361 * 1 2 3 25 25 H 1.08992 * 109.47331 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47064 * 300.01272 * 1 2 3 27 27 H 0.97003 * 119.99548 * 180.02562 * 7 6 4 28 28 H 1.09007 * 109.47368 * 183.95362 * 13 12 2 29 29 H 1.09000 * 109.47317 * 303.95076 * 13 12 2 30 30 H 1.08993 * 109.47555 * 63.95589 * 13 12 2 31 31 H 1.08993 * 109.47082 * 49.99836 * 14 12 2 32 32 H 1.08998 * 109.46415 * 289.99750 * 14 12 2 33 33 H 1.07994 * 119.93290 * 0.02562 * 16 15 14 34 34 H 1.07997 * 119.99327 * 180.33354 * 17 16 15 35 35 H 1.08003 * 119.98943 * 0.02562 * 20 15 14 36 36 H 1.09007 * 110.56955 * 268.54960 * 22 21 19 37 37 H 1.09003 * 110.57719 * 145.67764 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1316 6 6 1.6992 -0.2392 2.4828 7 7 0.9435 0.8305 2.6033 8 14 2.3223 -1.1191 4.0081 9 1 3.8073 -1.1187 4.0079 10 1 1.8267 -0.4194 5.2205 11 1 1.8278 -2.5194 4.0085 12 7 2.0197 -0.6926 -1.1993 13 6 1.4343 -2.0355 -1.3075 14 6 1.7530 0.0970 -2.4090 15 6 2.4775 -0.5167 -3.5793 16 6 3.7659 -0.1155 -3.8802 17 6 4.4366 -0.6792 -4.9495 18 6 3.8149 -1.6420 -5.7282 19 6 2.5171 -2.0460 -5.4251 20 6 1.8526 -1.4796 -4.3493 21 8 2.1347 -2.9974 -6.3260 22 6 3.0556 -2.8771 -7.4263 23 8 4.2457 -2.3402 -6.8192 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5140 0.8899 27 1 0.7095 1.1622 3.4843 28 1 1.8664 -2.5523 -2.1646 29 1 1.6466 -2.5988 -0.3988 30 1 0.3556 -1.9521 -1.4397 31 1 2.1027 1.1186 -2.2604 32 1 0.6815 0.1051 -2.6087 33 1 4.2511 0.6366 -3.2759 34 1 5.4449 -0.3679 -5.1791 35 1 0.8460 -1.7910 -4.1121 36 1 2.6662 -2.1908 -8.1784 37 1 3.2572 -3.8541 -7.8657 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049822454.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:34 Heat of formation + Delta-G solvation = -43.059375 kcal Electronic energy + Delta-G solvation = -19730.386427 eV Core-core repulsion = 16666.438510 eV Total energy + Delta-G solvation = -3063.947917 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.09601 -39.85246 -38.06294 -37.25007 -34.78369 -32.32112 -31.37421 -30.07484 -28.15394 -27.23620 -26.58144 -25.16702 -23.87478 -22.77966 -21.00748 -18.89480 -18.53228 -18.28015 -18.07410 -17.22441 -16.85054 -16.12456 -15.73723 -15.45866 -15.34011 -14.84181 -14.69879 -14.38638 -14.22608 -13.96211 -13.71269 -13.50003 -13.08553 -12.82942 -12.69203 -12.57819 -12.50794 -12.25397 -12.09560 -11.93263 -11.68205 -11.60267 -10.90241 -10.45058 -9.81585 -9.03017 -8.80703 -8.07153 -6.17341 0.14752 0.25627 1.45716 1.46456 1.54136 1.81702 2.44539 2.54573 2.58213 3.22043 3.50417 3.58953 3.83907 3.88138 4.07619 4.12604 4.28682 4.33402 4.49060 4.58174 4.64337 4.70478 4.79436 4.89065 4.93471 5.06521 5.10343 5.17718 5.20313 5.27035 5.46539 5.55322 5.62998 5.74503 5.82875 6.16004 6.23883 6.50384 6.74758 6.95263 7.51564 8.98341 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.038540 B = 0.004151 C = 0.004111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.335765 B = 6744.211211 C = 6809.854055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.215 3.785 3 H 0.014 0.986 4 C -0.513 4.513 5 H 0.054 0.946 6 C 0.013 3.987 7 N -0.920 5.920 8 Si 0.955 3.045 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.537 5.537 13 C 0.039 3.961 14 C 0.095 3.905 15 C -0.061 4.061 16 C -0.090 4.090 17 C -0.098 4.098 18 C 0.013 3.987 19 C 0.015 3.985 20 C -0.100 4.100 21 O -0.327 6.327 22 C 0.205 3.795 23 O -0.323 6.323 24 H 0.027 0.973 25 H 0.031 0.969 26 H 0.061 0.939 27 H 0.261 0.739 28 H 0.063 0.937 29 H 0.053 0.947 30 H 0.021 0.979 31 H 0.082 0.918 32 H 0.039 0.961 33 H 0.151 0.849 34 H 0.157 0.843 35 H 0.132 0.868 36 H 0.104 0.896 37 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.413 -3.858 -18.358 19.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.108 3.892 3 H 0.032 0.968 4 C -0.551 4.551 5 H 0.072 0.928 6 C -0.185 4.185 7 N -0.560 5.560 8 Si 0.782 3.218 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.260 5.260 13 C -0.109 4.109 14 C -0.032 4.032 15 C -0.062 4.062 16 C -0.109 4.109 17 C -0.116 4.116 18 C -0.031 4.031 19 C -0.029 4.029 20 C -0.120 4.120 21 O -0.244 6.244 22 C 0.094 3.906 23 O -0.240 6.240 24 H 0.046 0.954 25 H 0.050 0.950 26 H 0.080 0.920 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.039 0.961 31 H 0.100 0.900 32 H 0.058 0.942 33 H 0.169 0.831 34 H 0.175 0.825 35 H 0.150 0.850 36 H 0.122 0.878 37 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 3.883 -4.003 -18.269 19.101 hybrid contribution -0.874 -0.348 0.791 1.229 sum 3.008 -4.351 -17.478 18.261 Atomic orbital electron populations 1.22221 1.00297 0.99236 1.00127 1.19101 0.90044 0.93140 0.86896 0.96843 1.21332 1.30485 1.12393 0.90936 0.92804 1.25627 0.95449 0.95808 1.01623 1.69998 1.37911 1.24099 1.23995 0.85651 0.78724 0.78630 0.78835 1.19878 1.21055 1.19929 1.62258 1.59058 1.02968 1.01739 1.22210 0.96329 0.91212 1.01135 1.20981 0.97143 0.97262 0.87842 1.19571 0.95176 0.96262 0.95150 1.21032 0.93439 1.00536 0.95855 1.20306 1.01772 0.94561 0.94958 1.19989 0.92964 0.97483 0.92710 1.19814 0.94110 0.92955 0.95984 1.20005 1.00754 0.97152 0.94059 1.87314 1.54835 1.52043 1.30221 1.26102 0.73725 1.03124 0.87646 1.87305 1.32268 1.65324 1.39088 0.95400 0.94979 0.92009 0.93017 0.91873 0.92838 0.96101 0.89955 0.94244 0.83130 0.82545 0.85024 0.87845 0.82239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.56 8.22 71.98 0.59 -6.97 16 2 C 0.22 10.63 2.31 44.17 0.10 10.73 16 3 H 0.01 0.74 7.93 -2.39 -0.02 0.72 16 4 C -0.51 -27.92 7.91 25.60 0.20 -27.72 16 5 H 0.05 2.96 7.12 -2.91 -0.02 2.94 16 6 C 0.01 0.73 5.30 84.65 0.45 1.18 16 7 N -0.92 -52.23 11.32 21.45 0.24 -51.98 16 8 Si 0.96 43.58 29.54 68.60 2.03 45.60 16 9 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 10 H -0.29 -12.74 7.11 99.48 0.71 -12.04 16 11 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 12 N -0.54 -22.31 4.69 -906.07 -4.25 -26.57 16 13 C 0.04 1.53 8.26 127.69 1.06 2.59 16 14 C 0.10 3.24 4.69 85.56 0.40 3.65 16 15 C -0.06 -1.81 4.88 -19.86 -0.10 -1.90 16 16 C -0.09 -2.38 9.69 22.27 0.22 -2.16 16 17 C -0.10 -2.37 10.06 22.35 0.22 -2.14 16 18 C 0.01 0.34 7.15 22.59 0.16 0.50 16 19 C 0.02 0.44 7.15 22.59 0.16 0.60 16 20 C -0.10 -2.91 7.97 22.34 0.18 -2.73 16 21 O -0.33 -8.34 11.40 -76.01 -0.87 -9.20 16 22 C 0.20 3.53 8.89 113.37 1.01 4.54 16 23 O -0.32 -7.69 11.40 -76.10 -0.87 -8.56 16 24 H 0.03 1.16 6.91 -2.38 -0.02 1.14 16 25 H 0.03 1.47 6.42 -2.39 -0.02 1.46 16 26 H 0.06 3.28 6.07 -2.39 -0.01 3.26 16 27 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 28 H 0.06 2.21 6.16 -2.38 -0.01 2.20 16 29 H 0.05 2.27 6.76 -2.39 -0.02 2.25 16 30 H 0.02 0.78 6.46 -2.39 -0.02 0.76 16 31 H 0.08 2.75 7.87 -2.39 -0.02 2.73 16 32 H 0.04 1.32 7.00 -2.39 -0.02 1.30 16 33 H 0.15 3.59 8.06 -2.91 -0.02 3.57 16 34 H 0.16 2.95 8.06 -2.91 -0.02 2.92 16 35 H 0.13 3.67 8.03 -2.91 -0.02 3.64 16 36 H 0.10 1.28 8.14 -2.38 -0.02 1.26 16 37 H 0.16 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -62.51 299.61 2.01 -60.50 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: 1.07 Total: 10.05 kcal Atomic # 6 Polarization: -24.49 SS G_CDS: 4.65 Total: -19.84 kcal Atomic # 7 Polarization: -74.54 SS G_CDS: -4.01 Total: -78.55 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: -1.73 Total: -17.76 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.60 kcal Total: -62.51 2.01 -60.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049822454.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.436 kcal (2) G-P(sol) polarization free energy of solvation -62.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds