Wall clock time and date at job start Mon Mar 30 2020 06:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47165 * 2 1 4 4 C 1.50702 * 109.47114 * 239.99887 * 2 1 3 5 5 H 1.08000 * 119.99807 * 240.00382 * 4 2 1 6 6 C 1.37871 * 120.00244 * 59.99809 * 4 2 1 7 7 N 1.31521 * 119.99767 * 0.02562 * 6 4 2 8 8 Si 1.86792 * 120.00241 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47293 * 60.00099 * 8 6 4 10 10 H 1.48499 * 109.47377 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47096 * 300.00093 * 8 6 4 12 12 N 1.46496 * 109.47085 * 119.99622 * 2 1 3 13 13 C 1.46504 * 119.99944 * 55.33779 * 12 2 1 14 14 C 1.39925 * 120.00626 * 235.33390 * 12 2 1 15 15 C 1.38872 * 120.01573 * 5.80608 * 14 12 2 16 16 C 1.38143 * 120.02840 * 180.02562 * 15 14 12 17 17 C 1.38694 * 120.17260 * 359.97270 * 16 15 14 18 18 C 1.38982 * 119.93563 * 359.94511 * 17 16 15 19 19 C 1.38670 * 119.88834 * 359.86125 * 18 17 16 20 20 O 1.36107 * 120.78086 * 180.21104 * 18 17 16 21 21 C 1.43179 * 116.72040 * 342.70242 * 20 18 17 22 22 C 1.53469 * 108.22605 * 46.28669 * 21 20 18 23 23 O 1.36233 * 119.31464 * 179.80676 * 17 16 15 24 24 H 1.09004 * 109.46903 * 180.02562 * 1 2 3 25 25 H 1.08992 * 109.47270 * 60.00375 * 1 2 3 26 26 H 1.09002 * 109.47261 * 299.99923 * 1 2 3 27 27 H 0.97002 * 120.00186 * 179.97438 * 7 6 4 28 28 H 1.09001 * 109.47326 * 89.99731 * 13 12 2 29 29 H 1.09001 * 109.47417 * 209.99855 * 13 12 2 30 30 H 1.09000 * 109.47074 * 329.99927 * 13 12 2 31 31 H 1.08001 * 119.98348 * 0.04967 * 15 14 12 32 32 H 1.08000 * 119.91677 * 179.97438 * 16 15 14 33 33 H 1.07996 * 119.98835 * 180.17402 * 19 18 17 34 34 H 1.08998 * 109.70784 * 286.60614 * 21 20 18 35 35 H 1.08999 * 109.71092 * 165.97133 * 21 20 18 36 36 H 1.09004 * 109.70576 * 180.54629 * 22 21 20 37 37 H 1.09000 * 109.74700 * 59.94073 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0078 9 1 1.8281 -2.5200 -4.0081 10 1 1.8279 -0.4194 -5.2204 11 1 3.8075 -1.1190 -4.0076 12 7 2.0183 -0.6905 1.1962 13 6 1.5821 -2.0598 1.4809 14 6 2.9013 -0.0424 2.0668 15 6 3.2209 1.2938 1.8644 16 6 4.0931 1.9338 2.7235 17 6 4.6516 1.2455 3.7902 18 6 4.3324 -0.0914 3.9964 19 6 3.4538 -0.7326 3.1364 20 8 4.8672 -0.7822 5.0402 21 6 6.0254 -0.2148 5.6618 22 6 5.7624 1.2794 5.8936 23 8 5.5127 1.8927 4.6243 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5137 -0.8899 26 1 -0.3634 0.5138 0.8900 27 1 0.7094 1.1617 -3.4844 28 1 2.2708 -2.7648 1.0152 29 1 1.5710 -2.2210 2.5589 30 1 0.5800 -2.2126 1.0803 31 1 2.7871 1.8330 1.0352 32 1 4.3407 2.9729 2.5642 33 1 3.2025 -1.7706 3.2968 34 1 6.8904 -0.3391 5.0103 35 1 6.2093 -0.7081 6.6162 36 1 6.6351 1.7384 6.3584 37 1 4.8934 1.4044 6.5396 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049822466.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:21 Heat of formation + Delta-G solvation = -32.427642 kcal Electronic energy + Delta-G solvation = -19970.089697 eV Core-core repulsion = 16906.602806 eV Total energy + Delta-G solvation = -3063.486891 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.78455 -38.25583 -36.84987 -35.47634 -32.89052 -30.73379 -30.31155 -28.66331 -27.97953 -25.42437 -25.04813 -24.19703 -21.71905 -21.11487 -19.31999 -18.30829 -16.93815 -16.81582 -16.36930 -15.44742 -15.04745 -14.86188 -14.61523 -14.11859 -13.98890 -13.65029 -13.37149 -12.98868 -12.78067 -12.62687 -12.05620 -11.63826 -11.49776 -11.25622 -11.00352 -10.97770 -10.87353 -10.73587 -10.51197 -10.22181 -10.10382 -9.97109 -9.21520 -8.52608 -8.45533 -7.96101 -6.35396 -6.03022 -4.18516 1.86913 2.10637 3.27096 3.30188 3.31861 3.35544 3.54408 4.16222 4.35153 4.41673 4.42352 4.88320 4.95832 5.11496 5.19139 5.29936 5.50456 5.67905 5.85005 5.87644 5.92964 6.18214 6.25234 6.38757 6.51299 6.69000 6.73461 6.80272 6.91157 7.04076 7.07648 7.29924 7.37813 7.63987 7.85692 7.87777 8.14589 8.30653 8.53509 8.88218 9.48601 10.93570 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.031402 B = 0.004844 C = 0.004738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.455764 B = 5779.148009 C = 5907.889019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.265 3.735 3 H 0.054 0.946 4 C -0.525 4.525 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.891 5.891 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.604 5.604 13 C 0.100 3.900 14 C 0.248 3.752 15 C -0.193 4.193 16 C -0.061 4.061 17 C -0.040 4.040 18 C 0.097 3.903 19 C -0.217 4.217 20 O -0.313 6.313 21 C 0.023 3.977 22 C 0.024 3.976 23 O -0.314 6.314 24 H 0.031 0.969 25 H 0.093 0.907 26 H 0.013 0.987 27 H 0.264 0.736 28 H 0.040 0.960 29 H 0.050 0.950 30 H 0.068 0.932 31 H 0.140 0.860 32 H 0.126 0.874 33 H 0.127 0.873 34 H 0.072 0.928 35 H 0.113 0.887 36 H 0.111 0.889 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.937 -0.615 13.676 14.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.164 3.836 3 H 0.071 0.929 4 C -0.563 4.563 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.529 5.529 8 Si 0.725 3.275 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.310 5.310 13 C -0.044 4.044 14 C 0.140 3.860 15 C -0.215 4.215 16 C -0.080 4.080 17 C -0.085 4.085 18 C 0.052 3.948 19 C -0.241 4.241 20 O -0.228 6.228 21 C -0.053 4.053 22 C -0.052 4.052 23 O -0.230 6.230 24 H 0.050 0.950 25 H 0.112 0.888 26 H 0.032 0.968 27 H 0.074 0.926 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.087 0.913 31 H 0.157 0.843 32 H 0.144 0.856 33 H 0.145 0.855 34 H 0.091 0.909 35 H 0.131 0.869 36 H 0.129 0.871 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.710 -0.612 13.400 14.579 hybrid contribution 0.482 -0.580 -0.712 1.037 sum 6.192 -1.192 12.688 14.168 Atomic orbital electron populations 1.22134 0.98333 0.99626 1.00819 1.18948 0.90903 0.93439 0.80273 0.92852 1.21388 1.31559 1.13109 0.90283 0.92314 1.24886 0.94899 0.95011 0.98935 1.69853 1.36476 1.22698 1.23922 0.86562 0.79278 0.79660 0.81958 1.20276 1.21189 1.20230 1.47236 1.45974 1.13610 1.24172 1.21428 1.00133 0.83923 0.98924 1.17595 0.88868 0.91096 0.88442 1.20715 1.03817 0.93906 1.03068 1.20094 0.95585 0.99248 0.93099 1.18464 1.02204 0.90460 0.97388 1.18463 0.97365 0.89172 0.89795 1.19692 1.05990 1.00671 0.97782 1.86240 1.43246 1.48376 1.44923 1.23521 0.87846 0.94655 0.99286 1.23421 1.02691 0.93655 0.85480 1.86258 1.61961 1.48575 1.26199 0.94973 0.88821 0.96795 0.92624 0.94108 0.93158 0.91335 0.84294 0.85584 0.85511 0.90943 0.86922 0.87067 0.91340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.48 8.85 37.16 0.33 -3.15 16 2 C 0.26 6.39 2.58 -69.08 -0.18 6.21 16 3 H 0.05 1.37 5.31 -51.93 -0.28 1.10 16 4 C -0.52 -13.87 8.44 -34.44 -0.29 -14.16 16 5 H 0.06 1.58 7.79 -52.49 -0.41 1.17 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -24.25 11.32 55.43 0.63 -23.62 16 8 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 9 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 10 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 N -0.60 -12.89 2.89 -173.30 -0.50 -13.39 16 13 C 0.10 1.83 9.52 59.85 0.57 2.40 16 14 C 0.25 5.05 6.54 -83.73 -0.55 4.50 16 15 C -0.19 -3.81 9.31 -39.38 -0.37 -4.17 16 16 C -0.06 -1.09 9.95 -39.45 -0.39 -1.48 16 17 C -0.04 -0.70 6.49 -39.14 -0.25 -0.96 16 18 C 0.10 1.74 6.49 -39.15 -0.25 1.49 16 19 C -0.22 -4.07 9.08 -39.23 -0.36 -4.43 16 20 O -0.31 -4.94 10.42 -32.87 -0.34 -5.28 16 21 C 0.02 0.26 7.26 37.40 0.27 0.53 16 22 C 0.02 0.26 7.26 37.40 0.27 0.54 16 23 O -0.31 -4.94 10.42 -33.27 -0.35 -5.28 16 24 H 0.03 0.70 6.53 -51.93 -0.34 0.37 16 25 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16 26 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 28 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.05 0.80 6.45 -51.93 -0.33 0.47 16 30 H 0.07 1.24 6.19 -51.93 -0.32 0.92 16 31 H 0.14 2.85 5.74 -52.49 -0.30 2.55 16 32 H 0.13 1.98 8.06 -52.49 -0.42 1.56 16 33 H 0.13 2.22 6.29 -52.49 -0.33 1.89 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 298.58 15.07 4.50 4.50 Total: -1.00 -29.10 298.58 -7.10 -36.20 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -4.72 Total: 2.14 kcal Atomic # 6 Polarization: -9.78 SS G_CDS: -1.29 Total: -11.07 kcal Atomic # 7 Polarization: -37.14 SS G_CDS: 0.13 Total: -37.02 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: -0.69 Total: -10.56 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.10 -7.10 -36.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049822466.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.768 kcal (2) G-P(sol) polarization free energy of solvation -29.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds