Wall clock time and date at job start Mon Mar 30 2020 06:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47165 * 2 1 4 4 C 1.50702 * 109.47114 * 239.99887 * 2 1 3 5 5 H 1.08000 * 119.99807 * 240.00382 * 4 2 1 6 6 C 1.37871 * 120.00244 * 59.99809 * 4 2 1 7 7 N 1.31521 * 119.99767 * 0.02562 * 6 4 2 8 8 Si 1.86792 * 120.00241 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47293 * 60.00099 * 8 6 4 10 10 H 1.48499 * 109.47377 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47096 * 300.00093 * 8 6 4 12 12 N 1.46496 * 109.47085 * 119.99622 * 2 1 3 13 13 C 1.46504 * 119.99944 * 55.33779 * 12 2 1 14 14 C 1.39925 * 120.00626 * 235.33390 * 12 2 1 15 15 C 1.38872 * 120.01573 * 5.80608 * 14 12 2 16 16 C 1.38143 * 120.02840 * 180.02562 * 15 14 12 17 17 C 1.38694 * 120.17260 * 359.97270 * 16 15 14 18 18 C 1.38982 * 119.93563 * 359.94511 * 17 16 15 19 19 C 1.38670 * 119.88834 * 359.86125 * 18 17 16 20 20 O 1.36107 * 120.78086 * 180.21104 * 18 17 16 21 21 C 1.43179 * 116.72040 * 342.70242 * 20 18 17 22 22 C 1.53469 * 108.22605 * 46.28669 * 21 20 18 23 23 O 1.36233 * 119.31464 * 179.80676 * 17 16 15 24 24 H 1.09004 * 109.46903 * 180.02562 * 1 2 3 25 25 H 1.08992 * 109.47270 * 60.00375 * 1 2 3 26 26 H 1.09002 * 109.47261 * 299.99923 * 1 2 3 27 27 H 0.97002 * 120.00186 * 179.97438 * 7 6 4 28 28 H 1.09001 * 109.47326 * 89.99731 * 13 12 2 29 29 H 1.09001 * 109.47417 * 209.99855 * 13 12 2 30 30 H 1.09000 * 109.47074 * 329.99927 * 13 12 2 31 31 H 1.08001 * 119.98348 * 0.04967 * 15 14 12 32 32 H 1.08000 * 119.91677 * 179.97438 * 16 15 14 33 33 H 1.07996 * 119.98835 * 180.17402 * 19 18 17 34 34 H 1.08998 * 109.70784 * 286.60614 * 21 20 18 35 35 H 1.08999 * 109.71092 * 165.97133 * 21 20 18 36 36 H 1.09004 * 109.70576 * 180.54629 * 22 21 20 37 37 H 1.09000 * 109.74700 * 59.94073 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0078 9 1 1.8281 -2.5200 -4.0081 10 1 1.8279 -0.4194 -5.2204 11 1 3.8075 -1.1190 -4.0076 12 7 2.0183 -0.6905 1.1962 13 6 1.5821 -2.0598 1.4809 14 6 2.9013 -0.0424 2.0668 15 6 3.2209 1.2938 1.8644 16 6 4.0931 1.9338 2.7235 17 6 4.6516 1.2455 3.7902 18 6 4.3324 -0.0914 3.9964 19 6 3.4538 -0.7326 3.1364 20 8 4.8672 -0.7822 5.0402 21 6 6.0254 -0.2148 5.6618 22 6 5.7624 1.2794 5.8936 23 8 5.5127 1.8927 4.6243 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5137 -0.8899 26 1 -0.3634 0.5138 0.8900 27 1 0.7094 1.1617 -3.4844 28 1 2.2708 -2.7648 1.0152 29 1 1.5710 -2.2210 2.5589 30 1 0.5800 -2.2126 1.0803 31 1 2.7871 1.8330 1.0352 32 1 4.3407 2.9729 2.5642 33 1 3.2025 -1.7706 3.2968 34 1 6.8904 -0.3391 5.0103 35 1 6.2093 -0.7081 6.6162 36 1 6.6351 1.7384 6.3584 37 1 4.8934 1.4044 6.5396 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049822466.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:21 Heat of formation + Delta-G solvation = -49.117618 kcal Electronic energy + Delta-G solvation = -19970.813429 eV Core-core repulsion = 16906.602806 eV Total energy + Delta-G solvation = -3064.210622 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.01682 -39.72906 -38.04427 -37.05178 -34.74017 -32.02447 -31.84955 -30.17656 -29.31012 -27.29832 -26.64842 -25.41325 -23.12770 -22.65566 -20.76332 -19.58753 -18.50425 -18.13812 -17.99246 -16.87791 -16.70012 -16.24021 -15.81821 -15.52956 -15.34441 -15.11610 -14.74247 -14.45570 -14.34887 -14.04199 -13.47800 -13.31871 -13.02933 -12.96117 -12.75426 -12.57188 -12.39776 -12.23328 -11.97471 -11.90795 -11.80212 -11.31366 -11.05543 -10.47831 -10.02786 -9.35541 -8.20226 -7.73444 -6.26685 0.43503 0.67447 1.42333 1.43264 1.50774 2.11895 2.37531 2.44097 2.74241 2.91778 3.14874 3.47802 3.83480 4.04839 4.17489 4.24921 4.31949 4.44907 4.52778 4.60088 4.66091 4.72889 4.80171 4.88523 4.97064 5.03156 5.08440 5.15901 5.29478 5.43828 5.50839 5.62980 5.68842 5.92728 6.05942 6.21971 6.52599 6.59326 6.89585 6.93225 7.44288 8.90486 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.031402 B = 0.004844 C = 0.004738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.455764 B = 5779.148009 C = 5907.889019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.269 3.731 3 H 0.031 0.969 4 C -0.538 4.538 5 H 0.048 0.952 6 C 0.022 3.978 7 N -0.913 5.913 8 Si 0.955 3.045 9 H -0.271 1.271 10 H -0.281 1.281 11 H -0.278 1.278 12 N -0.617 5.617 13 C 0.101 3.899 14 C 0.226 3.774 15 C -0.211 4.211 16 C -0.063 4.063 17 C -0.035 4.035 18 C 0.097 3.903 19 C -0.219 4.219 20 O -0.323 6.323 21 C 0.015 3.985 22 C 0.016 3.984 23 O -0.327 6.327 24 H 0.037 0.963 25 H 0.070 0.930 26 H 0.025 0.975 27 H 0.265 0.735 28 H 0.037 0.963 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.122 0.878 32 H 0.143 0.857 33 H 0.137 0.863 34 H 0.075 0.925 35 H 0.155 0.845 36 H 0.152 0.848 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.294 -1.221 15.438 17.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.167 3.833 3 H 0.049 0.951 4 C -0.577 4.577 5 H 0.066 0.934 6 C -0.178 4.178 7 N -0.552 5.552 8 Si 0.781 3.219 9 H -0.196 1.196 10 H -0.206 1.206 11 H -0.204 1.204 12 N -0.324 5.324 13 C -0.042 4.042 14 C 0.120 3.880 15 C -0.233 4.233 16 C -0.083 4.083 17 C -0.081 4.081 18 C 0.051 3.949 19 C -0.243 4.243 20 O -0.238 6.238 21 C -0.060 4.060 22 C -0.059 4.059 23 O -0.242 6.242 24 H 0.056 0.944 25 H 0.089 0.911 26 H 0.044 0.956 27 H 0.074 0.926 28 H 0.056 0.944 29 H 0.093 0.907 30 H 0.085 0.915 31 H 0.139 0.861 32 H 0.161 0.839 33 H 0.155 0.845 34 H 0.093 0.907 35 H 0.173 0.827 36 H 0.170 0.830 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 7.090 -1.223 15.205 16.821 hybrid contribution 0.206 -0.347 -1.057 1.131 sum 7.295 -1.570 14.148 15.996 Atomic orbital electron populations 1.21943 0.97785 0.99731 1.00164 1.18650 0.91243 0.92411 0.80967 0.95101 1.21611 1.31532 1.12928 0.91613 0.93356 1.25568 0.95107 0.95660 1.01418 1.69964 1.37180 1.23628 1.24420 0.85662 0.78458 0.78871 0.78926 1.19636 1.20645 1.20400 1.47087 1.46985 1.14558 1.23818 1.21510 0.99771 0.82439 1.00497 1.17779 0.89533 0.91469 0.89181 1.20667 1.05075 0.94149 1.03424 1.20256 0.95033 1.00080 0.92898 1.18544 1.01693 0.90478 0.97372 1.18514 0.96971 0.89324 0.90106 1.19788 1.05979 1.01078 0.97445 1.86225 1.44735 1.48803 1.44055 1.23961 0.86165 0.95025 1.00847 1.23856 1.04726 0.93780 0.83546 1.86239 1.61086 1.49161 1.27764 0.94388 0.91135 0.95616 0.92604 0.94447 0.90672 0.91488 0.86062 0.83880 0.84508 0.90652 0.82736 0.83034 0.90724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.49 8.85 71.98 0.64 -5.85 16 2 C 0.27 13.36 2.58 44.25 0.11 13.47 16 3 H 0.03 1.68 5.31 -2.38 -0.01 1.66 16 4 C -0.54 -29.03 8.44 25.60 0.22 -28.82 16 5 H 0.05 2.65 7.79 -2.91 -0.02 2.62 16 6 C 0.02 1.20 5.30 84.65 0.45 1.65 16 7 N -0.91 -50.63 11.32 21.45 0.24 -50.38 16 8 Si 0.95 43.00 29.54 68.60 2.03 45.03 16 9 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 10 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 11 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 12 N -0.62 -26.71 2.89 -702.19 -2.03 -28.75 16 13 C 0.10 3.67 9.52 127.77 1.22 4.88 16 14 C 0.23 9.33 6.54 38.13 0.25 9.58 16 15 C -0.21 -8.56 9.31 22.40 0.21 -8.35 16 16 C -0.06 -2.26 9.95 22.36 0.22 -2.04 16 17 C -0.03 -1.19 6.49 22.56 0.15 -1.04 16 18 C 0.10 3.32 6.49 22.55 0.15 3.46 16 19 C -0.22 -8.05 9.08 22.50 0.20 -7.85 16 20 O -0.32 -9.34 10.42 -82.55 -0.86 -10.20 16 21 C 0.01 0.27 7.26 72.14 0.52 0.80 16 22 C 0.02 0.29 7.26 72.14 0.52 0.82 16 23 O -0.33 -9.44 10.42 -83.98 -0.88 -10.32 16 24 H 0.04 1.69 6.53 -2.38 -0.02 1.67 16 25 H 0.07 3.65 6.07 -2.39 -0.01 3.64 16 26 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.26 14.02 8.31 -92.71 -0.77 13.25 16 28 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.07 2.31 6.45 -2.39 -0.02 2.29 16 30 H 0.07 2.41 6.19 -2.39 -0.01 2.40 16 31 H 0.12 5.29 5.74 -2.91 -0.02 5.27 16 32 H 0.14 4.44 8.06 -2.91 -0.02 4.42 16 33 H 0.14 4.63 6.29 -2.91 -0.02 4.61 16 34 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.16 1.57 8.14 -2.39 -0.02 1.56 16 36 H 0.15 1.58 8.14 -2.38 -0.02 1.56 16 37 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -62.91 298.58 4.44 -58.47 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: 1.08 Total: 15.44 kcal Atomic # 6 Polarization: -24.14 SS G_CDS: 4.86 Total: -19.28 kcal Atomic # 7 Polarization: -77.34 SS G_CDS: -1.79 Total: -79.13 kcal Atomic # 8 Polarization: -18.78 SS G_CDS: -1.74 Total: -20.52 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -62.91 4.44 -58.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049822466.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.350 kcal (2) G-P(sol) polarization free energy of solvation -62.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds