Wall clock time and date at job start Mon Mar 30 2020 06:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34767 * 117.00108 * 2 1 4 4 O 1.21520 * 119.99816 * 0.02562 * 3 2 1 5 5 C 1.47293 * 120.00015 * 179.97438 * 3 2 1 6 6 C 1.39792 * 120.21339 * 359.97438 * 5 3 2 7 7 C 1.37730 * 119.92056 * 179.74542 * 6 5 3 8 8 C 1.38626 * 120.36061 * 0.27706 * 7 6 5 9 9 C 1.37954 * 120.43537 * 359.97438 * 8 7 6 10 10 C 1.38961 * 120.06956 * 359.97438 * 9 8 7 11 11 N 1.38831 * 120.17802 * 179.97438 * 10 9 8 12 12 C 1.46892 * 111.00002 * 63.95657 * 11 10 9 13 13 C 1.46900 * 111.00122 * 299.99824 * 11 10 9 14 14 H 1.09001 * 109.46997 * 60.00288 * 13 11 10 15 15 C 1.52994 * 109.47242 * 300.00254 * 13 11 10 16 16 C 1.50700 * 109.46985 * 179.97438 * 13 11 10 17 17 H 1.08002 * 120.00332 * 0.02562 * 16 13 11 18 18 C 1.37880 * 120.00076 * 179.97438 * 16 13 11 19 19 N 1.31512 * 119.99522 * 0.02562 * 18 16 13 20 20 Si 1.86797 * 120.00234 * 180.02562 * 18 16 13 21 21 H 1.48506 * 109.46916 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47199 * 120.00242 * 20 18 16 23 23 H 1.48507 * 109.46821 * 240.00447 * 20 18 16 24 24 H 1.09003 * 109.47183 * 299.99744 * 1 2 3 25 25 H 1.09001 * 109.47461 * 59.99516 * 1 2 3 26 26 H 1.09007 * 109.47127 * 180.02562 * 1 2 3 27 27 H 1.08002 * 120.04351 * 0.02856 * 6 5 3 28 28 H 1.07998 * 119.82205 * 180.25943 * 7 6 5 29 29 H 1.07998 * 119.78277 * 180.02562 * 8 7 6 30 30 H 1.08001 * 119.96461 * 180.02562 * 9 8 7 31 31 H 1.09004 * 109.47790 * 59.99852 * 12 11 10 32 32 H 1.09006 * 109.47236 * 179.97438 * 12 11 10 33 33 H 1.08998 * 109.47527 * 299.99539 * 12 11 10 34 34 H 1.09001 * 109.47152 * 299.99939 * 15 13 11 35 35 H 1.09003 * 109.47416 * 59.99811 * 15 13 11 36 36 H 1.09004 * 109.47389 * 180.02562 * 15 13 11 37 37 H 0.97003 * 119.99633 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2008 0.0000 4 8 1.4019 2.2199 0.0005 5 6 3.5347 1.2778 0.0006 6 6 4.3004 0.1083 0.0017 7 6 5.6754 0.1874 -0.0031 8 6 6.3063 1.4218 -0.0032 9 6 5.5652 2.5853 0.0009 10 6 4.1768 2.5265 0.0047 11 7 3.4287 3.6960 0.0094 12 6 3.6488 4.4667 -1.2216 13 6 3.7260 4.5064 1.1981 14 1 4.7841 4.7683 1.2039 15 6 3.3920 3.7053 2.4580 16 6 2.8977 5.7649 1.1680 17 1 2.2181 5.9447 0.3482 18 6 3.0067 6.6865 2.1878 19 7 3.8340 6.4674 3.1864 20 14 1.9795 8.2463 2.1509 21 1 1.1345 8.2537 0.9298 22 1 1.1104 8.2952 3.3541 23 1 2.8767 9.4296 2.1398 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 3.8144 -0.8562 0.0016 28 1 6.2654 -0.7172 -0.0065 29 1 7.3850 1.4729 -0.0074 30 1 6.0645 3.5430 0.0004 31 1 3.3547 3.8672 -2.0832 32 1 3.0507 5.3775 -1.1920 33 1 4.7041 4.7272 -1.3035 34 1 2.3339 3.4434 2.4522 35 1 3.9914 2.7951 2.4795 36 1 3.6122 4.3067 3.3401 37 1 3.9104 7.1155 3.9040 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050050846.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:26 Heat of formation + Delta-G solvation = -52.474367 kcal Electronic energy + Delta-G solvation = -20514.268792 eV Core-core repulsion = 17449.912610 eV Total energy + Delta-G solvation = -3064.356182 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.60640 -40.26602 -37.87479 -37.11998 -34.87092 -32.47190 -31.48621 -30.56203 -28.58113 -27.35167 -26.01264 -24.71825 -23.68533 -21.88704 -21.06435 -18.88815 -18.38337 -17.80544 -17.31947 -17.10422 -16.71776 -16.14355 -15.68290 -15.61295 -15.11395 -14.68895 -14.26708 -14.24372 -13.99735 -13.79244 -13.20429 -13.04863 -13.00920 -12.84442 -12.72289 -12.61323 -12.31494 -12.14223 -12.07839 -11.90754 -11.63673 -11.30569 -11.01186 -10.56496 -9.96511 -9.58731 -8.96953 -8.14955 -6.25678 -0.17963 0.39238 1.37823 1.39860 1.52317 1.74674 1.86393 2.39786 2.85641 3.11703 3.21848 3.89558 4.02138 4.16302 4.31979 4.38270 4.40283 4.47787 4.49712 4.60716 4.68609 4.74414 4.77632 4.93338 4.95954 5.01005 5.14496 5.30114 5.36604 5.41394 5.49722 5.56977 5.68928 5.74899 5.94268 6.21579 6.27932 6.85730 6.87702 7.02305 7.42367 8.91677 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.020106 B = 0.007104 C = 0.005904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.260500 B = 3940.531624 C = 4741.100458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.364 6.364 3 C 0.493 3.507 4 O -0.495 6.495 5 C -0.143 4.143 6 C -0.055 4.055 7 C -0.135 4.135 8 C -0.067 4.067 9 C -0.184 4.184 10 C 0.152 3.848 11 N -0.510 5.510 12 C 0.053 3.947 13 C 0.232 3.768 14 H -0.022 1.022 15 C -0.109 4.109 16 C -0.518 4.518 17 H 0.055 0.945 18 C 0.013 3.987 19 N -0.919 5.919 20 Si 0.961 3.039 21 H -0.271 1.271 22 H -0.281 1.281 23 H -0.275 1.275 24 H 0.049 0.951 25 H 0.057 0.943 26 H 0.139 0.861 27 H 0.161 0.839 28 H 0.172 0.828 29 H 0.158 0.842 30 H 0.114 0.886 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.022 0.978 34 H 0.016 0.984 35 H 0.016 0.984 36 H 0.064 0.936 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.211 -15.155 -7.125 16.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.281 6.281 3 C 0.337 3.663 4 O -0.382 6.382 5 C -0.145 4.145 6 C -0.074 4.074 7 C -0.153 4.153 8 C -0.085 4.085 9 C -0.204 4.204 10 C 0.056 3.944 11 N -0.232 5.232 12 C -0.094 4.094 13 C 0.127 3.873 14 H -0.005 1.005 15 C -0.167 4.167 16 C -0.556 4.556 17 H 0.074 0.926 18 C -0.186 4.186 19 N -0.559 5.559 20 Si 0.786 3.214 21 H -0.196 1.196 22 H -0.207 1.207 23 H -0.200 1.200 24 H 0.068 0.932 25 H 0.076 0.924 26 H 0.157 0.843 27 H 0.178 0.822 28 H 0.190 0.810 29 H 0.175 0.825 30 H 0.132 0.868 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.041 0.959 34 H 0.035 0.965 35 H 0.035 0.965 36 H 0.083 0.917 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.504 -14.854 -6.948 16.467 hybrid contribution -0.079 1.627 0.309 1.658 sum 1.425 -13.227 -6.638 14.868 Atomic orbital electron populations 1.23450 0.75151 1.05488 1.01895 1.86501 1.24546 1.32106 1.84988 1.21333 0.89655 0.81544 0.73752 1.90958 1.66764 1.36502 1.43983 1.19309 0.89249 0.94253 1.11707 1.21691 0.94597 0.97073 0.94026 1.21514 0.93831 0.98847 1.01058 1.21639 1.01455 0.91421 0.94001 1.21837 0.93796 1.00283 1.04498 1.19199 0.90830 0.91283 0.93063 1.59461 1.55048 1.04799 1.03859 1.22132 0.98859 0.98008 0.90361 1.19028 0.92833 0.90165 0.85273 1.00471 1.21516 0.97469 0.96792 1.00959 1.21410 1.23497 1.03290 1.07415 0.92638 1.25687 0.96619 1.01371 0.94913 1.70013 1.37997 1.36745 1.11164 0.85461 0.78640 0.79277 0.77981 1.19562 1.20654 1.20041 0.93195 0.92448 0.84292 0.82162 0.81022 0.82474 0.86826 0.92132 0.91622 0.95930 0.96467 0.96455 0.91691 0.92799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 10.57 113.37 1.20 1.99 16 2 O -0.36 -10.99 9.81 -56.78 -0.56 -11.54 16 3 C 0.49 18.99 7.89 70.20 0.55 19.54 16 4 O -0.50 -23.24 14.82 19.77 0.29 -22.94 16 5 C -0.14 -5.14 5.89 -19.99 -0.12 -5.26 16 6 C -0.06 -1.43 9.61 22.53 0.22 -1.21 16 7 C -0.14 -2.83 10.02 22.24 0.22 -2.61 16 8 C -0.07 -1.65 10.03 22.30 0.22 -1.42 16 9 C -0.18 -6.38 8.55 22.38 0.19 -6.19 16 10 C 0.15 6.14 3.30 38.74 0.13 6.27 16 11 N -0.51 -24.32 2.54 -699.52 -1.78 -26.09 16 12 C 0.05 2.28 9.10 127.69 1.16 3.44 16 13 C 0.23 12.59 1.83 44.17 0.08 12.67 16 14 H -0.02 -1.28 7.11 -2.39 -0.02 -1.30 16 15 C -0.11 -5.92 8.84 71.98 0.64 -5.28 16 16 C -0.52 -30.21 7.88 25.60 0.20 -30.01 16 17 H 0.06 3.29 6.40 -2.91 -0.02 3.27 16 18 C 0.01 0.73 5.30 84.66 0.45 1.17 16 19 N -0.92 -54.29 11.32 21.45 0.24 -54.05 16 20 Si 0.96 45.51 29.54 68.60 2.03 47.53 16 21 H -0.27 -12.67 7.11 99.48 0.71 -11.97 16 22 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 23 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 24 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.14 1.99 8.14 -2.38 -0.02 1.97 16 27 H 0.16 3.19 7.61 -2.91 -0.02 3.17 16 28 H 0.17 2.06 8.06 -2.91 -0.02 2.04 16 29 H 0.16 2.75 8.06 -2.91 -0.02 2.73 16 30 H 0.11 4.19 7.01 -2.91 -0.02 4.17 16 31 H 0.06 2.34 8.14 -2.38 -0.02 2.32 16 32 H 0.07 3.03 6.10 -2.38 -0.01 3.01 16 33 H 0.02 0.91 7.33 -2.39 -0.02 0.89 16 34 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.02 0.83 7.22 -2.39 -0.02 0.82 16 36 H 0.06 3.77 6.07 -2.38 -0.01 3.76 16 37 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 Total: -1.00 -72.29 308.14 6.44 -65.86 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: 1.06 Total: 8.15 kcal Atomic # 6 Polarization: -12.05 SS G_CDS: 5.15 Total: -6.91 kcal Atomic # 7 Polarization: -78.60 SS G_CDS: -1.54 Total: -80.14 kcal Atomic # 8 Polarization: -34.22 SS G_CDS: -0.26 Total: -34.49 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.53 kcal Total: -72.29 6.44 -65.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050050846.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.382 kcal (2) G-P(sol) polarization free energy of solvation -72.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds