Wall clock time and date at job start Mon Mar 30 2020 07:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46901 * 109.47200 * 2 1 4 4 C 1.46899 * 111.00152 * 193.95683 * 3 2 1 5 5 C 1.50704 * 109.47609 * 66.04229 * 4 3 2 6 6 H 1.07998 * 119.99333 * 0.02562 * 5 4 3 7 7 C 1.37870 * 120.00181 * 179.97438 * 5 4 3 8 8 N 1.31512 * 119.99899 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00050 * 0.02562 * 7 5 4 10 10 H 1.48503 * 109.47005 * 90.00058 * 9 7 5 11 11 H 1.48502 * 109.47063 * 209.99638 * 9 7 5 12 12 H 1.48494 * 109.47473 * 329.99934 * 9 7 5 13 13 C 1.39004 * 111.00031 * 70.00146 * 3 2 1 14 14 C 1.39238 * 119.92745 * 63.67713 * 13 3 2 15 15 C 1.36573 * 120.20277 * 180.27907 * 14 13 3 16 16 C 1.39862 * 120.04900 * 0.02562 * 15 14 13 17 17 C 1.47384 * 120.07110 * 180.02562 * 16 15 14 18 18 O 1.21524 * 119.99846 * 179.97438 * 17 16 15 19 19 O 1.34759 * 120.00108 * 359.97325 * 17 16 15 20 20 C 1.39851 * 119.85590 * 359.97438 * 16 15 14 21 21 C 1.37642 * 119.79813 * 0.02562 * 20 16 15 22 22 C 1.50700 * 120.02999 * 179.97438 * 21 20 16 23 23 H 1.08992 * 109.46974 * 299.99834 * 1 2 3 24 24 H 1.09002 * 109.47085 * 60.00498 * 1 2 3 25 25 H 1.09004 * 109.46933 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.46979 * 240.00033 * 2 1 3 27 27 H 1.08999 * 109.47399 * 120.00201 * 2 1 3 28 28 H 1.08999 * 109.47207 * 186.04660 * 4 3 2 29 29 H 1.09003 * 109.47194 * 306.04533 * 4 3 2 30 30 H 0.97005 * 120.00488 * 180.02562 * 8 7 5 31 31 H 1.07999 * 119.90023 * 0.26163 * 14 13 3 32 32 H 1.07997 * 119.97593 * 179.97438 * 15 14 13 33 33 H 0.96704 * 117.00140 * 179.97438 * 19 17 16 34 34 H 1.07996 * 120.10342 * 180.02562 * 20 16 15 35 35 H 1.08997 * 109.47079 * 270.02432 * 22 21 20 36 36 H 1.09007 * 109.46937 * 30.01887 * 22 21 20 37 37 H 1.08993 * 109.47466 * 150.01620 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4499 1.4377 -0.3308 5 6 3.6536 0.9854 -1.7538 6 1 2.8052 0.6889 -2.3527 7 6 4.9227 0.9512 -2.2914 8 7 5.1002 0.5570 -3.5334 9 14 6.3900 1.4647 -1.2557 10 1 6.9298 0.2805 -0.5405 11 1 7.4422 2.0337 -2.1356 12 1 5.9644 2.4882 -0.2674 13 6 1.7673 2.0026 1.2195 14 6 2.3710 1.5233 2.3790 15 6 2.1226 2.1223 3.5809 16 6 1.2592 3.2203 3.6511 17 6 0.9912 3.8674 4.9478 18 8 0.2411 4.8217 5.0072 19 8 1.5779 3.4009 6.0677 20 6 0.6516 3.7036 2.4878 21 6 0.9063 3.0953 1.2797 22 6 0.2539 3.6113 0.0231 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 3.8112 2.4600 -0.2192 29 1 4.0028 0.7816 0.3415 30 1 5.9932 0.5325 -3.9117 31 1 3.0376 0.6751 2.3278 32 1 2.5926 1.7473 4.4781 33 1 1.3718 3.8582 6.8945 34 1 -0.0155 4.5515 2.5373 35 1 -0.6978 3.1019 -0.1278 36 1 0.0810 4.6835 0.1174 37 1 0.9064 3.4221 -0.8292 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050546112.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:56 Heat of formation + Delta-G solvation = -62.322356 kcal Electronic energy + Delta-G solvation = -19814.261628 eV Core-core repulsion = 16749.478406 eV Total energy + Delta-G solvation = -3064.783223 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.52695 -39.46874 -36.52013 -36.06741 -32.83365 -32.56373 -30.89817 -29.87585 -27.31608 -26.44810 -24.08998 -22.33591 -22.05633 -21.08218 -19.79713 -18.00671 -17.28389 -16.96016 -15.67906 -15.65541 -15.37284 -15.09211 -14.36276 -14.05219 -13.66684 -13.35396 -13.21929 -13.03267 -12.68597 -12.51622 -12.17932 -11.95395 -11.61879 -11.56511 -11.34924 -11.30952 -11.06442 -10.87131 -10.63911 -10.56166 -10.40037 -9.93214 -9.40826 -8.78601 -8.67398 -8.38089 -7.73693 -6.14493 -4.13250 0.74001 1.50789 2.54811 2.97677 3.21716 3.30596 3.32714 3.84186 4.33660 4.44300 4.89213 5.00112 5.12012 5.17499 5.35628 5.46976 5.58741 5.64252 5.81825 5.90039 5.99337 6.02448 6.07950 6.17945 6.27992 6.38632 6.39767 6.47669 6.53802 6.61651 6.74209 6.78157 6.84997 6.98593 7.49391 7.66571 7.81706 8.00509 8.53844 8.92965 9.46054 10.98062 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.022359 B = 0.005620 C = 0.005060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.992852 B = 4981.335436 C = 5532.639918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.060 3.940 3 N -0.501 5.501 4 C 0.168 3.832 5 C -0.513 4.513 6 H 0.084 0.916 7 C 0.073 3.927 8 N -0.896 5.896 9 Si 0.871 3.129 10 H -0.277 1.277 11 H -0.284 1.284 12 H -0.266 1.266 13 C 0.159 3.841 14 C -0.170 4.170 15 C -0.057 4.057 16 C -0.152 4.152 17 C 0.531 3.469 18 O -0.523 6.523 19 O -0.514 6.514 20 C -0.048 4.048 21 C -0.083 4.083 22 C -0.104 4.104 23 H 0.044 0.956 24 H 0.062 0.938 25 H 0.052 0.948 26 H 0.098 0.902 27 H 0.026 0.974 28 H 0.031 0.969 29 H -0.010 1.010 30 H 0.265 0.735 31 H 0.128 0.872 32 H 0.131 0.869 33 H 0.410 0.590 34 H 0.135 0.865 35 H 0.066 0.934 36 H 0.056 0.944 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.710 2.759 14.385 16.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.065 4.065 3 N -0.222 5.222 4 C 0.044 3.956 5 C -0.551 4.551 6 H 0.102 0.898 7 C -0.130 4.130 8 N -0.534 5.534 9 Si 0.698 3.302 10 H -0.202 1.202 11 H -0.210 1.210 12 H -0.191 1.191 13 C 0.064 3.936 14 C -0.190 4.190 15 C -0.076 4.076 16 C -0.154 4.154 17 C 0.377 3.623 18 O -0.413 6.413 19 O -0.326 6.326 20 C -0.067 4.067 21 C -0.084 4.084 22 C -0.161 4.161 23 H 0.063 0.937 24 H 0.081 0.919 25 H 0.071 0.929 26 H 0.116 0.884 27 H 0.044 0.956 28 H 0.049 0.951 29 H 0.008 0.992 30 H 0.075 0.925 31 H 0.146 0.854 32 H 0.149 0.851 33 H 0.268 0.732 34 H 0.153 0.847 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.915 3.015 13.482 15.922 hybrid contribution 1.342 0.094 1.733 2.194 sum -6.573 3.109 15.215 16.863 Atomic orbital electron populations 1.21794 0.95989 1.00744 1.01826 1.22112 0.94662 0.87807 1.01958 1.59575 1.20894 1.17053 1.24691 1.20264 0.81188 0.96725 0.97460 1.20952 0.94630 1.44354 0.95180 0.89792 1.24848 0.98557 0.94749 0.94803 1.69876 1.22609 1.47376 1.13551 0.86931 0.83105 0.79453 0.80729 1.20230 1.20981 1.19109 1.19336 0.91747 0.92857 0.89652 1.21589 1.02223 1.02018 0.93146 1.20957 0.94985 0.93399 0.98209 1.18902 1.05625 1.00707 0.90127 1.20932 0.76239 0.80646 0.84449 1.90873 1.35764 1.27549 1.87148 1.84597 1.68416 1.60756 1.18788 1.21059 0.96985 0.98485 0.90192 1.19864 0.97912 0.95409 0.95212 1.20667 1.00645 0.99264 0.95527 0.93693 0.91856 0.92900 0.88355 0.95562 0.95079 0.99191 0.92504 0.85395 0.85115 0.73172 0.84678 0.91508 0.92505 0.89073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.94 37.16 0.37 -1.79 16 2 C 0.06 1.07 5.44 -3.83 -0.02 1.05 16 3 N -0.50 -9.72 3.38 -172.48 -0.58 -10.30 16 4 C 0.17 3.84 3.37 -4.97 -0.02 3.82 16 5 C -0.51 -13.74 8.87 -34.44 -0.31 -14.04 16 6 H 0.08 2.43 7.47 -52.49 -0.39 2.04 16 7 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 8 N -0.90 -26.44 13.96 55.43 0.77 -25.66 16 9 Si 0.87 20.80 27.47 -169.99 -4.67 16.13 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.27 -6.19 6.54 56.52 0.37 -5.82 16 13 C 0.16 2.74 3.71 -83.86 -0.31 2.43 16 14 C -0.17 -2.67 8.44 -39.81 -0.34 -3.01 16 15 C -0.06 -0.79 9.56 -39.58 -0.38 -1.17 16 16 C -0.15 -2.17 5.88 -104.96 -0.62 -2.79 16 17 C 0.53 7.07 8.26 34.45 0.28 7.35 16 18 O -0.52 -8.11 17.13 -19.28 -0.33 -8.44 16 19 O -0.51 -5.11 12.67 -40.65 -0.51 -5.63 16 20 C -0.05 -0.70 9.24 -39.20 -0.36 -1.07 16 21 C -0.08 -1.30 5.89 -104.47 -0.62 -1.91 16 22 C -0.10 -1.50 9.76 36.01 0.35 -1.15 16 23 H 0.04 0.65 7.52 -51.93 -0.39 0.25 16 24 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.10 1.96 6.60 -51.93 -0.34 1.62 16 27 H 0.03 0.44 7.03 -51.93 -0.37 0.08 16 28 H 0.03 0.75 7.11 -51.93 -0.37 0.38 16 29 H -0.01 -0.22 6.88 -51.93 -0.36 -0.57 16 30 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 31 H 0.13 1.98 7.10 -52.49 -0.37 1.61 16 32 H 0.13 1.55 7.60 -52.49 -0.40 1.15 16 33 H 0.41 2.09 9.11 45.56 0.42 2.50 16 34 H 0.14 1.81 7.64 -52.49 -0.40 1.41 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.06 0.70 8.08 -51.92 -0.42 0.28 16 37 H 0.09 1.52 7.46 -51.93 -0.39 1.14 16 LS Contribution 311.51 15.07 4.69 4.69 Total: -1.00 -30.79 311.51 -6.90 -37.69 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -4.22 Total: 1.85 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: -2.05 Total: -10.33 kcal Atomic # 7 Polarization: -36.15 SS G_CDS: 0.19 Total: -35.96 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: -0.85 Total: -14.07 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.67 Total: 16.13 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.79 -6.90 -37.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050546112.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.635 kcal (2) G-P(sol) polarization free energy of solvation -30.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds