Wall clock time and date at job start Mon Mar 30 2020 07:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46901 * 109.47200 * 2 1 4 4 C 1.46899 * 111.00152 * 193.95683 * 3 2 1 5 5 C 1.50704 * 109.47609 * 66.04229 * 4 3 2 6 6 H 1.07998 * 119.99333 * 0.02562 * 5 4 3 7 7 C 1.37870 * 120.00181 * 179.97438 * 5 4 3 8 8 N 1.31512 * 119.99899 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00050 * 0.02562 * 7 5 4 10 10 H 1.48503 * 109.47005 * 90.00058 * 9 7 5 11 11 H 1.48502 * 109.47063 * 209.99638 * 9 7 5 12 12 H 1.48494 * 109.47473 * 329.99934 * 9 7 5 13 13 C 1.39004 * 111.00031 * 70.00146 * 3 2 1 14 14 C 1.39238 * 119.92745 * 63.67713 * 13 3 2 15 15 C 1.36573 * 120.20277 * 180.27907 * 14 13 3 16 16 C 1.39862 * 120.04900 * 0.02562 * 15 14 13 17 17 C 1.47384 * 120.07110 * 180.02562 * 16 15 14 18 18 O 1.21524 * 119.99846 * 179.97438 * 17 16 15 19 19 O 1.34759 * 120.00108 * 359.97325 * 17 16 15 20 20 C 1.39851 * 119.85590 * 359.97438 * 16 15 14 21 21 C 1.37642 * 119.79813 * 0.02562 * 20 16 15 22 22 C 1.50700 * 120.02999 * 179.97438 * 21 20 16 23 23 H 1.08992 * 109.46974 * 299.99834 * 1 2 3 24 24 H 1.09002 * 109.47085 * 60.00498 * 1 2 3 25 25 H 1.09004 * 109.46933 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.46979 * 240.00033 * 2 1 3 27 27 H 1.08999 * 109.47399 * 120.00201 * 2 1 3 28 28 H 1.08999 * 109.47207 * 186.04660 * 4 3 2 29 29 H 1.09003 * 109.47194 * 306.04533 * 4 3 2 30 30 H 0.97005 * 120.00488 * 180.02562 * 8 7 5 31 31 H 1.07999 * 119.90023 * 0.26163 * 14 13 3 32 32 H 1.07997 * 119.97593 * 179.97438 * 15 14 13 33 33 H 0.96704 * 117.00140 * 179.97438 * 19 17 16 34 34 H 1.07996 * 120.10342 * 180.02562 * 20 16 15 35 35 H 1.08997 * 109.47079 * 270.02432 * 22 21 20 36 36 H 1.09007 * 109.46937 * 30.01887 * 22 21 20 37 37 H 1.08993 * 109.47466 * 150.01620 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4499 1.4377 -0.3308 5 6 3.6536 0.9854 -1.7538 6 1 2.8052 0.6889 -2.3527 7 6 4.9227 0.9512 -2.2914 8 7 5.1002 0.5570 -3.5334 9 14 6.3900 1.4647 -1.2557 10 1 6.9298 0.2805 -0.5405 11 1 7.4422 2.0337 -2.1356 12 1 5.9644 2.4882 -0.2674 13 6 1.7673 2.0026 1.2195 14 6 2.3710 1.5233 2.3790 15 6 2.1226 2.1223 3.5809 16 6 1.2592 3.2203 3.6511 17 6 0.9912 3.8674 4.9478 18 8 0.2411 4.8217 5.0072 19 8 1.5779 3.4009 6.0677 20 6 0.6516 3.7036 2.4878 21 6 0.9063 3.0953 1.2797 22 6 0.2539 3.6113 0.0231 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 3.8112 2.4600 -0.2192 29 1 4.0028 0.7816 0.3415 30 1 5.9932 0.5325 -3.9117 31 1 3.0376 0.6751 2.3278 32 1 2.5926 1.7473 4.4781 33 1 1.3718 3.8582 6.8945 34 1 -0.0155 4.5515 2.5373 35 1 -0.6978 3.1019 -0.1278 36 1 0.0810 4.6835 0.1174 37 1 0.9064 3.4221 -0.8292 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050546112.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:56 Heat of formation + Delta-G solvation = -81.700287 kcal Electronic energy + Delta-G solvation = -19815.101918 eV Core-core repulsion = 16749.478406 eV Total energy + Delta-G solvation = -3065.623513 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.63306 -40.63925 -37.83139 -37.05708 -34.76048 -33.84668 -32.18251 -31.42346 -28.89388 -27.66910 -25.36178 -23.99777 -23.27372 -22.34372 -21.08627 -19.15314 -18.88586 -18.20971 -17.12235 -16.84422 -16.66692 -16.55802 -15.84911 -15.41927 -14.88606 -14.77167 -14.52129 -14.37787 -14.21119 -14.03004 -13.46531 -13.08051 -13.01350 -12.82861 -12.66685 -12.60318 -12.52050 -12.26573 -12.19173 -11.92094 -11.75330 -11.69869 -11.44270 -10.79638 -9.95309 -9.59245 -9.24813 -8.28734 -6.31977 -0.40908 0.36076 1.32902 1.36036 1.45197 1.46789 2.07170 2.32860 2.69275 2.99255 3.07148 3.77618 3.87621 4.09602 4.21052 4.23036 4.35521 4.40327 4.55065 4.70731 4.75045 4.84560 4.86617 4.91563 4.94565 5.00620 5.16076 5.22380 5.26125 5.37440 5.39323 5.50710 5.55530 5.64123 5.75379 5.98714 6.30099 6.73383 6.75778 6.97288 7.31157 8.87273 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.022359 B = 0.005620 C = 0.005060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.992852 B = 4981.335436 C = 5532.639918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.060 3.940 3 N -0.507 5.507 4 C 0.181 3.819 5 C -0.512 4.512 6 H 0.046 0.954 7 C 0.015 3.985 8 N -0.943 5.943 9 Si 0.937 3.063 10 H -0.265 1.265 11 H -0.282 1.282 12 H -0.254 1.254 13 C 0.131 3.869 14 C -0.175 4.175 15 C -0.046 4.046 16 C -0.153 4.153 17 C 0.540 3.460 18 O -0.548 6.548 19 O -0.503 6.503 20 C -0.047 4.047 21 C -0.087 4.087 22 C -0.101 4.101 23 H 0.052 0.948 24 H 0.054 0.946 25 H 0.073 0.927 26 H 0.066 0.934 27 H 0.037 0.963 28 H 0.023 0.977 29 H -0.005 1.005 30 H 0.267 0.733 31 H 0.128 0.872 32 H 0.156 0.844 33 H 0.433 0.567 34 H 0.147 0.853 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.791 3.436 17.448 19.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.066 4.066 3 N -0.228 5.228 4 C 0.055 3.945 5 C -0.551 4.551 6 H 0.064 0.936 7 C -0.183 4.183 8 N -0.584 5.584 9 Si 0.761 3.239 10 H -0.190 1.190 11 H -0.208 1.208 12 H -0.178 1.178 13 C 0.037 3.963 14 C -0.195 4.195 15 C -0.065 4.065 16 C -0.154 4.154 17 C 0.387 3.613 18 O -0.440 6.440 19 O -0.317 6.317 20 C -0.066 4.066 21 C -0.088 4.088 22 C -0.157 4.157 23 H 0.071 0.929 24 H 0.073 0.927 25 H 0.092 0.908 26 H 0.084 0.916 27 H 0.055 0.945 28 H 0.041 0.959 29 H 0.013 0.987 30 H 0.076 0.924 31 H 0.146 0.854 32 H 0.174 0.826 33 H 0.296 0.704 34 H 0.165 0.835 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.013 3.689 16.591 18.790 hybrid contribution 1.271 -0.123 0.850 1.534 sum -6.741 3.566 17.441 19.035 Atomic orbital electron populations 1.21685 0.93545 1.02121 1.01764 1.22099 0.96659 0.87031 1.00778 1.59392 1.18526 1.18042 1.26872 1.19943 0.83856 0.95762 0.94918 1.21156 0.93530 1.43494 0.96886 0.93606 1.25702 1.01742 0.94889 0.95918 1.70023 1.23438 1.49315 1.15605 0.85866 0.79164 0.79648 0.79229 1.19011 1.20789 1.17769 1.19384 0.93855 0.94023 0.89085 1.21611 1.02295 1.02261 0.93336 1.21133 0.94332 0.92729 0.98312 1.19118 1.04997 1.00522 0.90775 1.20669 0.75805 0.79990 0.84873 1.90877 1.36930 1.28610 1.87602 1.84535 1.67433 1.60564 1.19153 1.21170 0.96995 0.98572 0.89862 1.19961 0.97803 0.94973 0.96055 1.20627 1.00348 1.00734 0.94005 0.92868 0.92656 0.90802 0.91594 0.94511 0.95912 0.98705 0.92391 0.85384 0.82612 0.70439 0.83530 0.90389 0.90494 0.92023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.85 9.94 71.98 0.72 -3.14 16 2 C 0.06 2.15 5.44 86.30 0.47 2.62 16 3 N -0.51 -19.84 3.38 -699.59 -2.36 -22.20 16 4 C 0.18 8.33 3.37 85.56 0.29 8.61 16 5 C -0.51 -28.42 8.87 25.60 0.23 -28.19 16 6 H 0.05 2.82 7.47 -2.91 -0.02 2.80 16 7 C 0.02 0.88 5.47 84.65 0.46 1.34 16 8 N -0.94 -57.46 13.96 21.44 0.30 -57.16 16 9 Si 0.94 42.99 27.47 68.60 1.88 44.87 16 10 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 11 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 12 H -0.25 -11.03 6.54 99.48 0.65 -10.38 16 13 C 0.13 4.39 3.71 38.49 0.14 4.53 16 14 C -0.17 -5.16 8.44 22.12 0.19 -4.98 16 15 C -0.05 -1.15 9.56 22.27 0.21 -0.93 16 16 C -0.15 -3.90 5.88 -20.09 -0.12 -4.02 16 17 C 0.54 12.57 8.26 70.23 0.58 13.15 16 18 O -0.55 -15.47 17.13 19.76 0.34 -15.13 16 19 O -0.50 -7.95 12.67 -56.70 -0.72 -8.66 16 20 C -0.05 -1.27 9.24 22.52 0.21 -1.06 16 21 C -0.09 -2.60 5.89 -19.76 -0.12 -2.72 16 22 C -0.10 -2.81 9.76 71.24 0.70 -2.11 16 23 H 0.05 1.45 7.52 -2.39 -0.02 1.43 16 24 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 25 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.07 2.76 6.60 -2.38 -0.02 2.74 16 27 H 0.04 1.22 7.03 -2.39 -0.02 1.20 16 28 H 0.02 1.09 7.11 -2.39 -0.02 1.07 16 29 H 0.00 -0.21 6.88 -2.39 -0.02 -0.23 16 30 H 0.27 15.22 8.31 -92.70 -0.77 14.45 16 31 H 0.13 3.73 7.10 -2.91 -0.02 3.71 16 32 H 0.16 3.04 7.60 -2.91 -0.02 3.01 16 33 H 0.43 2.61 9.11 -74.05 -0.67 1.93 16 34 H 0.15 3.56 7.64 -2.91 -0.02 3.54 16 35 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.08 1.79 8.08 -2.38 -0.02 1.77 16 37 H 0.06 2.10 7.46 -2.39 -0.02 2.08 16 Total: -1.00 -67.42 311.51 3.75 -63.67 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: 0.35 Total: 11.50 kcal Atomic # 6 Polarization: -20.84 SS G_CDS: 3.95 Total: -16.88 kcal Atomic # 7 Polarization: -77.30 SS G_CDS: -2.07 Total: -79.37 kcal Atomic # 8 Polarization: -23.42 SS G_CDS: -0.38 Total: -23.80 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 1.88 Total: 44.87 kcal Total: -67.42 3.75 -63.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050546112.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.028 kcal (2) G-P(sol) polarization free energy of solvation -67.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds