Wall clock time and date at job start Mon Mar 30 2020 07:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 109.47412 * 2 1 4 4 C 1.46498 * 119.99711 * 90.00179 * 3 2 1 5 5 C 1.50702 * 109.47304 * 270.00166 * 4 3 2 6 6 H 1.08006 * 119.99617 * 359.72183 * 5 4 3 7 7 C 1.37874 * 120.00543 * 180.02562 * 5 4 3 8 8 N 1.31518 * 119.99539 * 359.72305 * 7 5 4 9 9 Si 1.86795 * 120.00262 * 179.72568 * 7 5 4 10 10 H 1.48498 * 109.47427 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47373 * 119.99928 * 9 7 5 12 12 H 1.48505 * 109.47039 * 239.99786 * 9 7 5 13 13 C 1.39014 * 120.00296 * 270.00345 * 3 2 1 14 14 C 1.39244 * 119.92659 * 179.97438 * 13 3 2 15 15 C 1.36574 * 120.20146 * 179.97438 * 14 13 3 16 16 C 1.39855 * 120.05044 * 0.02562 * 15 14 13 17 17 C 1.47376 * 120.07272 * 179.97438 * 16 15 14 18 18 O 1.21517 * 120.00193 * 173.76516 * 17 16 15 19 19 O 1.34763 * 120.00526 * 353.76003 * 17 16 15 20 20 C 1.39864 * 119.85353 * 0.02562 * 16 15 14 21 21 C 1.50693 * 120.09979 * 180.02562 * 20 16 15 22 22 C 1.37645 * 119.79579 * 359.72291 * 20 16 15 23 23 H 1.08998 * 109.46706 * 299.99847 * 1 2 3 24 24 H 1.09002 * 109.47108 * 59.99442 * 1 2 3 25 25 H 1.08995 * 109.47283 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47205 * 240.00100 * 2 1 3 27 27 H 1.08994 * 109.47300 * 120.00256 * 2 1 3 28 28 H 1.09009 * 109.47292 * 150.00483 * 4 3 2 29 29 H 1.09000 * 109.47676 * 30.00118 * 4 3 2 30 30 H 0.97006 * 119.99862 * 180.02562 * 8 7 5 31 31 H 1.07997 * 119.89668 * 359.97438 * 14 13 3 32 32 H 1.07994 * 119.97308 * 180.02562 * 15 14 13 33 33 H 0.96695 * 117.00363 * 180.02562 * 19 17 16 34 34 H 1.09004 * 109.47361 * 83.41419 * 21 20 16 35 35 H 1.09000 * 109.47365 * 203.40637 * 21 20 16 36 36 H 1.08998 * 109.47491 * 323.41167 * 21 20 16 37 37 H 1.08003 * 120.02375 * 180.27575 * 22 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0717 1.2688 5 6 1.0068 2.7821 1.7039 6 1 0.1172 2.7287 1.0938 7 6 0.9953 3.5055 2.8776 8 7 2.0788 3.5710 3.6202 9 14 -0.5590 4.3924 3.4130 10 1 -1.6300 4.1635 2.4101 11 1 -0.9967 3.8712 4.7329 12 1 -0.2859 5.8480 3.5215 13 6 2.2501 2.0366 -1.2039 14 6 2.7138 3.3495 -1.2020 15 6 2.9438 3.9986 -2.3814 16 6 2.7134 3.3457 -3.5966 17 6 2.9609 4.0458 -4.8696 18 8 2.8699 3.4443 -5.9216 19 8 3.2881 5.3531 -4.8672 20 6 2.2466 2.0273 -3.6010 21 6 1.9971 1.3183 -4.9072 22 6 2.0218 1.3773 -2.4087 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 3.0646 2.7985 1.1384 29 1 2.5507 1.3450 2.0284 30 1 2.0707 4.0796 4.4462 31 1 2.8921 3.8561 -0.2650 32 1 3.3038 5.0167 -2.3757 33 1 3.4406 5.7691 -5.7267 34 1 2.9334 0.9029 -5.2798 35 1 1.2788 0.5132 -4.7522 36 1 1.5986 2.0258 -5.6343 37 1 1.6657 0.3577 -2.4079 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050576803.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:58 Heat of formation + Delta-G solvation = -68.120399 kcal Electronic energy + Delta-G solvation = -19770.185617 eV Core-core repulsion = 16705.150973 eV Total energy + Delta-G solvation = -3065.034645 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.16721 -38.85931 -36.34958 -35.68446 -32.93992 -32.31571 -30.73901 -29.57102 -27.11421 -26.38277 -23.77055 -23.08807 -21.78312 -21.01932 -19.35000 -17.77438 -16.95639 -16.60141 -16.14578 -15.44185 -15.26208 -14.46935 -14.34278 -13.70179 -13.45548 -13.33020 -13.01942 -12.84617 -12.61782 -12.29196 -11.99091 -11.91770 -11.63367 -11.40533 -11.30867 -11.21732 -11.05152 -10.81064 -10.63669 -10.38141 -10.02978 -9.82267 -9.73409 -9.08246 -8.59434 -8.35677 -6.73368 -6.15591 -4.26840 1.38978 1.96736 3.04287 3.20071 3.29026 3.33027 3.44400 3.87049 4.31259 4.36857 5.12451 5.19543 5.24267 5.38124 5.59853 5.68313 5.73597 5.81944 5.90132 5.95384 6.01988 6.10760 6.22217 6.23521 6.34646 6.48508 6.70042 6.72454 6.82532 6.88907 7.00182 7.03522 7.19158 7.32452 7.71407 8.00077 8.05760 8.22598 8.25765 8.81045 9.40287 10.86541 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.021211 B = 0.005652 C = 0.004889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.723558 B = 4952.405395 C = 5725.401921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.118 3.882 3 N -0.591 5.591 4 C 0.242 3.758 5 C -0.531 4.531 6 H 0.063 0.937 7 C 0.063 3.937 8 N -0.893 5.893 9 Si 0.896 3.104 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.282 1.282 13 C 0.283 3.717 14 C -0.209 4.209 15 C -0.010 4.010 16 C -0.231 4.231 17 C 0.532 3.468 18 O -0.536 6.536 19 O -0.519 6.519 20 C 0.032 3.968 21 C -0.119 4.119 22 C -0.241 4.241 23 H 0.073 0.927 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.040 0.960 29 H 0.035 0.965 30 H 0.264 0.736 31 H 0.140 0.860 32 H 0.127 0.873 33 H 0.404 0.596 34 H 0.071 0.929 35 H 0.054 0.946 36 H 0.088 0.912 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.945 -2.798 -11.119 11.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.006 4.006 3 N -0.292 5.292 4 C 0.123 3.877 5 C -0.570 4.570 6 H 0.081 0.919 7 C -0.140 4.140 8 N -0.532 5.532 9 Si 0.723 3.277 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.208 1.208 13 C 0.170 3.830 14 C -0.231 4.231 15 C -0.030 4.030 16 C -0.235 4.235 17 C 0.381 3.619 18 O -0.429 6.429 19 O -0.330 6.330 20 C 0.031 3.969 21 C -0.175 4.175 22 C -0.264 4.264 23 H 0.092 0.908 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.083 0.917 27 H 0.091 0.909 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.074 0.926 31 H 0.158 0.842 32 H 0.145 0.855 33 H 0.261 0.739 34 H 0.089 0.911 35 H 0.073 0.927 36 H 0.106 0.894 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 0.885 -3.204 -10.555 11.066 hybrid contribution -0.786 0.872 0.015 1.174 sum 0.099 -2.332 -10.540 10.795 Atomic orbital electron populations 1.22217 0.96349 1.00820 1.03445 1.21371 0.94504 0.83179 1.01552 1.47390 1.64476 1.12377 1.04931 1.19464 0.97166 0.92627 0.78437 1.21560 0.97872 1.31082 1.06485 0.91885 1.24953 0.96484 0.96251 0.96287 1.69935 1.27567 1.41429 1.14269 0.86470 0.83158 0.79539 0.78501 1.19692 1.20924 1.20793 1.18204 0.87489 0.91126 0.86142 1.20650 1.08701 0.94499 0.99231 1.20790 0.92836 0.98573 0.90778 1.18350 1.19539 0.95566 0.90028 1.20989 0.72117 0.79122 0.89690 1.90776 1.50559 1.67119 1.34400 1.84629 1.82205 1.26003 1.40149 1.19539 0.91046 0.91308 0.95049 1.21054 1.01746 1.00055 0.94621 1.20394 1.14716 1.01037 0.90253 0.90777 0.92923 0.92954 0.91750 0.90906 0.94260 0.94747 0.92594 0.84201 0.85535 0.73942 0.91080 0.92661 0.89353 0.85799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.66 10.24 37.16 0.38 -2.28 16 2 C 0.12 1.90 5.91 -4.04 -0.02 1.88 16 3 N -0.59 -11.57 2.57 -173.12 -0.45 -12.01 16 4 C 0.24 5.64 4.94 -5.19 -0.03 5.61 16 5 C -0.53 -13.57 8.92 -34.44 -0.31 -13.88 16 6 H 0.06 1.65 7.43 -52.48 -0.39 1.26 16 7 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 8 N -0.89 -24.57 13.29 55.43 0.74 -23.83 16 9 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 16 10 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 13 C 0.28 5.36 6.55 -83.86 -0.55 4.81 16 14 C -0.21 -3.99 9.13 -39.81 -0.36 -4.35 16 15 C -0.01 -0.17 9.55 -39.58 -0.38 -0.55 16 16 C -0.23 -3.90 5.88 -104.97 -0.62 -4.52 16 17 C 0.53 8.32 8.19 34.45 0.28 8.60 16 18 O -0.54 -9.02 14.12 -19.28 -0.27 -9.30 16 19 O -0.52 -6.53 12.69 -40.66 -0.52 -7.04 16 20 C 0.03 0.53 5.91 -104.23 -0.62 -0.09 16 21 C -0.12 -1.69 8.73 36.00 0.31 -1.38 16 22 C -0.24 -4.05 8.82 -39.43 -0.35 -4.40 16 23 H 0.07 1.35 7.27 -51.93 -0.38 0.98 16 24 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.90 6.16 -51.93 -0.32 0.58 16 27 H 0.07 1.14 7.89 -51.93 -0.41 0.73 16 28 H 0.04 0.97 6.17 -51.92 -0.32 0.65 16 29 H 0.03 0.84 7.89 -51.93 -0.41 0.43 16 30 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 31 H 0.14 2.89 6.11 -52.49 -0.32 2.57 16 32 H 0.13 1.94 7.61 -52.49 -0.40 1.54 16 33 H 0.40 3.05 9.11 45.56 0.42 3.47 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.05 0.68 8.04 -51.93 -0.42 0.27 16 36 H 0.09 1.35 5.85 -51.93 -0.30 1.04 16 37 H 0.12 1.85 6.11 -52.48 -0.32 1.53 16 LS Contribution 310.15 15.07 4.67 4.67 Total: -1.00 -28.91 310.15 -7.17 -36.08 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -3.98 Total: 4.88 kcal Atomic # 6 Polarization: -6.65 SS G_CDS: -2.35 Total: -9.00 kcal Atomic # 7 Polarization: -36.14 SS G_CDS: 0.29 Total: -35.85 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: -0.79 Total: -16.34 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -28.91 -7.17 -36.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050576803.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.038 kcal (2) G-P(sol) polarization free energy of solvation -28.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds