Wall clock time and date at job start Mon Mar 30 2020 07:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 109.47412 * 2 1 4 4 C 1.46498 * 119.99711 * 90.00179 * 3 2 1 5 5 C 1.50702 * 109.47304 * 270.00166 * 4 3 2 6 6 H 1.08006 * 119.99617 * 359.72183 * 5 4 3 7 7 C 1.37874 * 120.00543 * 180.02562 * 5 4 3 8 8 N 1.31518 * 119.99539 * 359.72305 * 7 5 4 9 9 Si 1.86795 * 120.00262 * 179.72568 * 7 5 4 10 10 H 1.48498 * 109.47427 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47373 * 119.99928 * 9 7 5 12 12 H 1.48505 * 109.47039 * 239.99786 * 9 7 5 13 13 C 1.39014 * 120.00296 * 270.00345 * 3 2 1 14 14 C 1.39244 * 119.92659 * 179.97438 * 13 3 2 15 15 C 1.36574 * 120.20146 * 179.97438 * 14 13 3 16 16 C 1.39855 * 120.05044 * 0.02562 * 15 14 13 17 17 C 1.47376 * 120.07272 * 179.97438 * 16 15 14 18 18 O 1.21517 * 120.00193 * 173.76516 * 17 16 15 19 19 O 1.34763 * 120.00526 * 353.76003 * 17 16 15 20 20 C 1.39864 * 119.85353 * 0.02562 * 16 15 14 21 21 C 1.50693 * 120.09979 * 180.02562 * 20 16 15 22 22 C 1.37645 * 119.79579 * 359.72291 * 20 16 15 23 23 H 1.08998 * 109.46706 * 299.99847 * 1 2 3 24 24 H 1.09002 * 109.47108 * 59.99442 * 1 2 3 25 25 H 1.08995 * 109.47283 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47205 * 240.00100 * 2 1 3 27 27 H 1.08994 * 109.47300 * 120.00256 * 2 1 3 28 28 H 1.09009 * 109.47292 * 150.00483 * 4 3 2 29 29 H 1.09000 * 109.47676 * 30.00118 * 4 3 2 30 30 H 0.97006 * 119.99862 * 180.02562 * 8 7 5 31 31 H 1.07997 * 119.89668 * 359.97438 * 14 13 3 32 32 H 1.07994 * 119.97308 * 180.02562 * 15 14 13 33 33 H 0.96695 * 117.00363 * 180.02562 * 19 17 16 34 34 H 1.09004 * 109.47361 * 83.41419 * 21 20 16 35 35 H 1.09000 * 109.47365 * 203.40637 * 21 20 16 36 36 H 1.08998 * 109.47491 * 323.41167 * 21 20 16 37 37 H 1.08003 * 120.02375 * 180.27575 * 22 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0717 1.2688 5 6 1.0068 2.7821 1.7039 6 1 0.1172 2.7287 1.0938 7 6 0.9953 3.5055 2.8776 8 7 2.0788 3.5710 3.6202 9 14 -0.5590 4.3924 3.4130 10 1 -1.6300 4.1635 2.4101 11 1 -0.9967 3.8712 4.7329 12 1 -0.2859 5.8480 3.5215 13 6 2.2501 2.0366 -1.2039 14 6 2.7138 3.3495 -1.2020 15 6 2.9438 3.9986 -2.3814 16 6 2.7134 3.3457 -3.5966 17 6 2.9609 4.0458 -4.8696 18 8 2.8699 3.4443 -5.9216 19 8 3.2881 5.3531 -4.8672 20 6 2.2466 2.0273 -3.6010 21 6 1.9971 1.3183 -4.9072 22 6 2.0218 1.3773 -2.4087 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 3.0646 2.7985 1.1384 29 1 2.5507 1.3450 2.0284 30 1 2.0707 4.0796 4.4462 31 1 2.8921 3.8561 -0.2650 32 1 3.3038 5.0167 -2.3757 33 1 3.4406 5.7691 -5.7267 34 1 2.9334 0.9029 -5.2798 35 1 1.2788 0.5132 -4.7522 36 1 1.5986 2.0258 -5.6343 37 1 1.6657 0.3577 -2.4079 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050576803.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:58 Heat of formation + Delta-G solvation = -84.278122 kcal Electronic energy + Delta-G solvation = -19770.886269 eV Core-core repulsion = 16705.150973 eV Total energy + Delta-G solvation = -3065.735296 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.42821 -40.19460 -37.70729 -36.89569 -34.86679 -33.64397 -32.05393 -31.17559 -28.61561 -27.85646 -25.13657 -24.77054 -23.09709 -22.35729 -20.75528 -18.97055 -18.62236 -18.23455 -17.52537 -16.95890 -16.53588 -16.17561 -15.63643 -15.19515 -14.78621 -14.69619 -14.33268 -14.18783 -14.10441 -13.77307 -13.34472 -13.28034 -13.09385 -12.91047 -12.82600 -12.67639 -12.51647 -12.35271 -12.20385 -11.91298 -11.69050 -11.38610 -11.02891 -10.65353 -10.60836 -9.69997 -8.41155 -7.98008 -6.34152 0.05940 0.60071 1.36860 1.40192 1.50465 1.75850 2.29952 2.36263 2.49085 2.98938 3.09059 3.88415 3.97714 4.12023 4.35056 4.41798 4.46425 4.56636 4.62697 4.65752 4.84287 4.89979 4.94548 4.99011 5.04406 5.13918 5.18293 5.28821 5.44755 5.46180 5.55048 5.69302 5.69798 5.79461 5.94421 6.06982 6.40576 6.75461 6.82756 7.17960 7.36623 8.84778 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.021211 B = 0.005652 C = 0.004889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.723558 B = 4952.405395 C = 5725.401921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.113 3.887 3 N -0.602 5.602 4 C 0.259 3.741 5 C -0.532 4.532 6 H 0.054 0.946 7 C 0.015 3.985 8 N -0.926 5.926 9 Si 0.955 3.045 10 H -0.271 1.271 11 H -0.277 1.277 12 H -0.280 1.280 13 C 0.264 3.736 14 C -0.231 4.231 15 C -0.006 4.006 16 C -0.238 4.238 17 C 0.537 3.463 18 O -0.547 6.547 19 O -0.513 6.513 20 C 0.028 3.972 21 C -0.112 4.112 22 C -0.232 4.232 23 H 0.040 0.960 24 H 0.048 0.952 25 H 0.085 0.915 26 H 0.094 0.906 27 H 0.073 0.927 28 H 0.018 0.982 29 H 0.017 0.983 30 H 0.266 0.734 31 H 0.113 0.887 32 H 0.140 0.860 33 H 0.427 0.573 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.171 -3.346 -12.958 13.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.010 4.010 3 N -0.304 5.304 4 C 0.138 3.862 5 C -0.570 4.570 6 H 0.072 0.928 7 C -0.184 4.184 8 N -0.566 5.566 9 Si 0.781 3.219 10 H -0.195 1.195 11 H -0.203 1.203 12 H -0.206 1.206 13 C 0.153 3.847 14 C -0.254 4.254 15 C -0.025 4.025 16 C -0.242 4.242 17 C 0.386 3.614 18 O -0.441 6.441 19 O -0.327 6.327 20 C 0.026 3.974 21 C -0.168 4.168 22 C -0.254 4.254 23 H 0.059 0.941 24 H 0.067 0.933 25 H 0.104 0.896 26 H 0.112 0.888 27 H 0.091 0.909 28 H 0.036 0.964 29 H 0.035 0.965 30 H 0.075 0.925 31 H 0.131 0.869 32 H 0.158 0.842 33 H 0.288 0.712 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 0.113 -3.740 -12.439 12.990 hybrid contribution -0.491 1.093 0.454 1.281 sum -0.378 -2.647 -11.985 12.280 Atomic orbital electron populations 1.22129 0.95910 1.02400 1.01534 1.21600 0.94814 0.81551 1.03009 1.47231 1.65825 1.13544 1.03792 1.18973 0.95600 0.91740 0.79926 1.21748 0.98222 1.30861 1.06215 0.92789 1.25682 0.99091 0.97096 0.96528 1.70030 1.29293 1.42470 1.14765 0.85547 0.79862 0.78373 0.78141 1.19542 1.20299 1.20571 1.18412 0.88305 0.91293 0.86656 1.20563 1.10640 0.95253 0.98926 1.20887 0.92176 0.99101 0.90315 1.18637 1.18860 0.96141 0.90536 1.20701 0.71919 0.79901 0.88860 1.90780 1.51067 1.67701 1.34554 1.84568 1.81436 1.24500 1.42170 1.19886 0.90203 0.91327 0.95969 1.21036 1.02626 1.00263 0.92915 1.20571 1.13749 1.01849 0.89267 0.94072 0.93291 0.89594 0.88795 0.90888 0.96380 0.96549 0.92487 0.86857 0.84188 0.71163 0.90387 0.90425 0.90169 0.83535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.84 10.24 71.98 0.74 -4.10 16 2 C 0.11 3.51 5.91 86.38 0.51 4.02 16 3 N -0.60 -23.78 2.57 -701.64 -1.80 -25.58 16 4 C 0.26 12.53 4.94 85.63 0.42 12.95 16 5 C -0.53 -27.93 8.92 25.60 0.23 -27.70 16 6 H 0.05 2.88 7.43 -2.91 -0.02 2.86 16 7 C 0.02 0.82 5.46 84.65 0.46 1.29 16 8 N -0.93 -52.21 13.29 21.45 0.28 -51.92 16 9 Si 0.96 42.71 29.54 68.60 2.03 44.73 16 10 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 11 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 12 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 13 C 0.26 9.96 6.55 38.48 0.25 10.22 16 14 C -0.23 -9.05 9.13 22.12 0.20 -8.85 16 15 C -0.01 -0.19 9.55 22.27 0.21 0.03 16 16 C -0.24 -7.66 5.88 -20.09 -0.12 -7.78 16 17 C 0.54 15.60 8.19 70.23 0.58 16.18 16 18 O -0.55 -17.09 14.12 19.78 0.28 -16.81 16 19 O -0.51 -11.58 12.69 -56.74 -0.72 -12.30 16 20 C 0.03 0.85 5.91 -19.61 -0.12 0.73 16 21 C -0.11 -2.87 8.73 71.23 0.62 -2.24 16 22 C -0.23 -7.33 8.82 22.37 0.20 -7.13 16 23 H 0.04 1.49 7.27 -2.39 -0.02 1.47 16 24 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 26 H 0.09 2.36 6.16 -2.39 -0.01 2.34 16 27 H 0.07 2.25 7.89 -2.39 -0.02 2.23 16 28 H 0.02 0.95 6.17 -2.38 -0.01 0.94 16 29 H 0.02 0.85 7.89 -2.39 -0.02 0.83 16 30 H 0.27 14.20 8.31 -92.70 -0.77 13.43 16 31 H 0.11 4.99 6.11 -2.91 -0.02 4.98 16 32 H 0.14 4.22 7.61 -2.91 -0.02 4.19 16 33 H 0.43 5.16 9.11 -74.06 -0.67 4.48 16 34 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 35 H 0.08 1.62 8.04 -2.39 -0.02 1.61 16 36 H 0.08 2.23 5.85 -2.39 -0.01 2.21 16 37 H 0.15 3.89 6.11 -2.91 -0.02 3.87 16 Total: -1.00 -62.44 310.15 4.67 -57.77 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: 0.42 Total: 16.50 kcal Atomic # 6 Polarization: -16.58 SS G_CDS: 4.19 Total: -12.39 kcal Atomic # 7 Polarization: -75.98 SS G_CDS: -1.52 Total: -77.50 kcal Atomic # 8 Polarization: -28.67 SS G_CDS: -0.44 Total: -29.11 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.73 kcal Total: -62.44 4.67 -57.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050576803.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.510 kcal (2) G-P(sol) polarization free energy of solvation -62.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds