Wall clock time and date at job start Mon Mar 30 2020 07:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45203 * 109.46786 * 2 1 4 4 C 1.34235 * 116.99445 * 180.02562 * 3 2 1 5 5 O 1.20820 * 120.00333 * 0.02562 * 4 3 2 6 6 C 1.50703 * 119.99595 * 179.97438 * 4 3 2 7 7 C 1.53003 * 109.47000 * 179.97438 * 6 4 3 8 8 N 1.46495 * 109.46861 * 180.02562 * 7 6 4 9 9 C 1.38864 * 119.99605 * 180.02562 * 8 7 6 10 10 C 1.39565 * 119.84138 * 359.72655 * 9 8 7 11 11 C 1.36343 * 120.15558 * 179.72496 * 10 9 8 12 12 C 1.40888 * 119.83894 * 0.54427 * 11 10 9 13 13 C 1.41137 * 120.15598 * 179.70372 * 12 11 10 14 14 H 1.08001 * 119.99924 * 155.11840 * 13 12 11 15 15 C 1.39864 * 119.99862 * 335.11100 * 13 12 11 16 16 N 1.30900 * 120.00290 * 342.13242 * 15 13 12 17 17 Si 1.86803 * 119.99906 * 162.13161 * 15 13 12 18 18 H 1.48495 * 109.47361 * 94.65496 * 17 15 13 19 19 H 1.48499 * 109.46879 * 214.65575 * 17 15 13 20 20 H 1.48508 * 109.46781 * 334.65246 * 17 15 13 21 21 C 1.40891 * 119.68598 * 359.73190 * 12 11 10 22 22 C 1.36334 * 119.83826 * 359.97438 * 21 12 11 23 23 H 1.09005 * 109.47467 * 299.99832 * 1 2 3 24 24 H 1.09006 * 109.47432 * 59.99905 * 1 2 3 25 25 H 1.08999 * 109.47417 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47009 * 240.00393 * 2 1 3 27 27 H 1.08999 * 109.47042 * 119.99994 * 2 1 3 28 28 H 1.08998 * 109.47000 * 60.00363 * 6 4 3 29 29 H 1.09000 * 109.47389 * 300.00222 * 6 4 3 30 30 H 1.08998 * 109.46658 * 60.00508 * 7 6 4 31 31 H 1.08993 * 109.47119 * 300.00419 * 7 6 4 32 32 H 0.96996 * 120.00438 * 0.02562 * 8 7 6 33 33 H 1.07996 * 119.92265 * 359.97438 * 10 9 8 34 34 H 1.08003 * 120.07955 * 180.27628 * 11 10 9 35 35 H 0.96999 * 120.00537 * 179.97438 * 16 15 13 36 36 H 1.07999 * 120.07495 * 179.97438 * 21 12 11 37 37 H 1.08003 * 119.91901 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5867 -0.0015 6 6 3.9207 2.9375 -0.0012 7 6 5.4486 2.8574 -0.0010 8 7 6.0084 4.2112 -0.0010 9 6 7.3851 4.3931 -0.0015 10 6 8.2322 3.2839 0.0039 11 6 9.5848 3.4551 -0.0022 12 6 10.1269 4.7555 -0.0022 13 6 11.5261 4.9405 -0.0022 14 1 11.9502 5.8524 -0.3958 15 6 12.3633 3.9428 0.5077 16 7 11.8737 3.0135 1.2888 17 14 14.1802 3.9365 0.0739 18 1 14.9453 4.6368 1.1366 19 1 14.6575 2.5348 -0.0378 20 1 14.3821 4.6330 -1.2221 21 6 9.2655 5.8705 -0.0018 22 6 7.9150 5.6843 -0.0018 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.5851 3.4698 0.8888 29 1 3.5844 3.4694 -0.8911 30 1 5.7845 2.3249 -0.8908 31 1 5.7845 2.3257 0.8891 32 1 5.4176 4.9804 -0.0007 33 1 7.8153 2.2877 0.0087 34 1 10.2392 2.5959 -0.0026 35 1 12.4542 2.3214 1.6422 36 1 9.6743 6.8702 -0.0014 37 1 7.2535 6.5381 -0.0010 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051601504.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:43 Heat of formation + Delta-G solvation = -91.686032 kcal Electronic energy + Delta-G solvation = -18551.174117 eV Core-core repulsion = 15485.117590 eV Total energy + Delta-G solvation = -3066.056527 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.59498 -39.77844 -37.94579 -36.89558 -35.05053 -33.00227 -32.14038 -31.35107 -29.93710 -26.65458 -25.22823 -23.85524 -22.90354 -21.96092 -21.43762 -19.14977 -18.86309 -18.01434 -17.88571 -17.09207 -16.67993 -16.17659 -16.10518 -15.59018 -14.88474 -14.64323 -14.47593 -14.19761 -13.91685 -13.65677 -13.62121 -13.33086 -12.93797 -12.80142 -12.72184 -12.71570 -12.48941 -12.43494 -12.22089 -11.64566 -11.56434 -11.54817 -11.18407 -11.06064 -10.32287 -9.40685 -8.55272 -8.18726 -6.01375 1.10262 1.11256 1.18602 1.39961 1.52829 1.54587 1.59090 2.27335 2.84355 2.94267 3.58721 3.84729 3.95440 3.98577 4.07130 4.08002 4.34127 4.41379 4.49408 4.52806 4.84899 4.85170 4.88582 4.92483 5.05056 5.13374 5.15228 5.27649 5.42930 5.45755 5.66003 5.80830 5.96677 6.19362 6.37327 6.61851 6.67795 6.84752 7.08283 7.15143 7.33495 8.48330 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.041091 B = 0.003138 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.256548 B = 8921.986544 C = 9507.087134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.051 3.949 3 O -0.358 6.358 4 C 0.469 3.531 5 O -0.543 6.543 6 C -0.109 4.109 7 C 0.150 3.850 8 N -0.747 5.747 9 C 0.109 3.891 10 C -0.177 4.177 11 C -0.147 4.147 12 C 0.035 3.965 13 C -0.504 4.504 14 H 0.070 0.930 15 C 0.029 3.971 16 N -0.843 5.843 17 Si 0.977 3.023 18 H -0.264 1.264 19 H -0.270 1.270 20 H -0.260 1.260 21 C -0.195 4.195 22 C -0.158 4.158 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.098 0.902 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.137 0.863 29 H 0.139 0.861 30 H 0.041 0.959 31 H 0.037 0.963 32 H 0.404 0.596 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.282 0.718 36 H 0.101 0.899 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.037 -2.678 -2.105 20.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.023 4.023 3 O -0.274 6.274 4 C 0.313 3.687 5 O -0.433 6.433 6 C -0.147 4.147 7 C 0.024 3.976 8 N -0.384 5.384 9 C 0.010 3.990 10 C -0.199 4.199 11 C -0.168 4.168 12 C 0.033 3.967 13 C -0.535 4.535 14 H 0.089 0.911 15 C -0.183 4.183 16 N -0.471 5.471 17 Si 0.799 3.201 18 H -0.189 1.189 19 H -0.195 1.195 20 H -0.184 1.184 21 C -0.215 4.215 22 C -0.180 4.180 23 H 0.089 0.911 24 H 0.089 0.911 25 H 0.117 0.883 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.155 0.845 29 H 0.157 0.843 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.240 0.760 33 H 0.114 0.886 34 H 0.113 0.887 35 H 0.092 0.908 36 H 0.119 0.881 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -19.809 -3.387 -1.965 20.193 hybrid contribution 1.010 -0.313 0.053 1.058 sum -18.800 -3.700 -1.911 19.255 Atomic orbital electron populations 1.21821 0.90152 1.04372 1.03867 1.23306 0.97243 0.79250 1.02471 1.86499 1.23607 1.33663 1.83663 1.23866 0.80761 0.92818 0.71219 1.90708 1.61235 1.44607 1.46797 1.21428 0.93651 0.90670 1.08915 1.20685 0.91548 0.84986 1.00376 1.43658 1.02164 1.06152 1.86405 1.17392 0.83910 0.92876 1.04835 1.20251 0.93605 0.96532 1.09519 1.20845 0.93694 0.97419 1.04799 1.17847 0.93979 0.91755 0.93158 1.19605 0.91982 1.03575 1.38381 0.91134 1.26663 1.05494 0.93936 0.92176 1.69931 1.39471 1.13337 1.24393 0.85276 0.76695 0.78475 0.79693 1.18882 1.19505 1.18368 1.20799 0.93431 0.97270 1.10008 1.20133 0.94837 0.94676 1.08357 0.91111 0.91054 0.88340 0.91486 0.91564 0.84499 0.84302 0.94057 0.94426 0.75979 0.88608 0.88678 0.90823 0.88063 0.85550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 10.29 71.98 0.74 -0.66 16 2 C 0.05 0.83 6.19 71.98 0.45 1.27 16 3 O -0.36 -7.06 10.22 -51.46 -0.53 -7.59 16 4 C 0.47 10.99 7.96 71.24 0.57 11.56 16 5 O -0.54 -17.13 15.73 21.98 0.35 -16.78 16 6 C -0.11 -2.03 5.93 29.85 0.18 -1.86 16 7 C 0.15 4.33 4.18 86.38 0.36 4.69 16 8 N -0.75 -23.40 5.70 -339.00 -1.93 -25.33 16 9 C 0.11 4.64 6.67 38.67 0.26 4.90 16 10 C -0.18 -8.69 9.23 22.15 0.20 -8.49 16 11 C -0.15 -8.26 8.63 22.48 0.19 -8.06 16 12 C 0.04 2.01 5.57 -21.27 -0.12 1.89 16 13 C -0.50 -28.74 9.03 23.38 0.21 -28.53 16 14 H 0.07 3.87 7.91 -2.91 -0.02 3.84 16 15 C 0.03 1.56 5.13 85.23 0.44 2.00 16 16 N -0.84 -47.39 10.98 21.82 0.24 -47.15 16 17 Si 0.98 40.89 29.60 68.60 2.03 42.92 16 18 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 19 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 20 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 21 C -0.19 -9.73 9.74 22.48 0.22 -9.51 16 22 C -0.16 -6.78 9.82 22.15 0.22 -6.56 16 23 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 24 H 0.07 0.64 8.14 -2.38 -0.02 0.63 16 25 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.07 1.13 8.13 -2.39 -0.02 1.11 16 27 H 0.07 1.13 8.13 -2.39 -0.02 1.11 16 28 H 0.14 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.14 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.04 1.35 7.89 -2.39 -0.02 1.33 16 31 H 0.04 1.26 7.87 -2.39 -0.02 1.24 16 32 H 0.40 9.76 8.47 -92.71 -0.79 8.98 16 33 H 0.10 4.47 6.68 -2.91 -0.02 4.45 16 34 H 0.10 5.65 6.18 -2.91 -0.02 5.63 16 35 H 0.28 14.43 8.30 -92.71 -0.77 13.66 16 36 H 0.10 4.73 8.06 -2.91 -0.02 4.70 16 37 H 0.13 4.39 8.06 -2.91 -0.02 4.36 16 Total: -1.00 -69.60 318.30 4.36 -65.24 By element: Atomic # 1 Polarization: 25.75 SS G_CDS: 0.29 Total: 26.03 kcal Atomic # 6 Polarization: -41.27 SS G_CDS: 3.91 Total: -37.36 kcal Atomic # 7 Polarization: -70.78 SS G_CDS: -1.69 Total: -72.48 kcal Atomic # 8 Polarization: -24.18 SS G_CDS: -0.18 Total: -24.37 kcal Atomic # 14 Polarization: 40.89 SS G_CDS: 2.03 Total: 42.92 kcal Total: -69.60 4.36 -65.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051601504.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.441 kcal (2) G-P(sol) polarization free energy of solvation -69.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds