Wall clock time and date at job start Mon Mar 30 2020 07:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34230 * 117.00039 * 2 1 4 4 O 1.20832 * 119.99643 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00102 * 180.02562 * 3 2 1 6 6 C 1.53001 * 109.47059 * 180.02562 * 5 3 2 7 7 C 1.53000 * 109.46596 * 180.02562 * 6 5 3 8 8 N 1.46508 * 109.46644 * 180.02562 * 7 6 5 9 9 C 1.38855 * 119.99926 * 180.02562 * 8 7 6 10 10 C 1.39569 * 119.84192 * 359.72273 * 9 8 7 11 11 C 1.36337 * 120.16197 * 179.72492 * 10 9 8 12 12 C 1.40894 * 119.83280 * 0.54565 * 11 10 9 13 13 C 1.41135 * 120.15206 * 179.70471 * 12 11 10 14 14 H 1.07998 * 120.00017 * 204.62975 * 13 12 11 15 15 C 1.39868 * 120.00396 * 24.62204 * 13 12 11 16 16 N 1.30900 * 119.99549 * 17.97330 * 15 13 12 17 17 Si 1.86800 * 120.00249 * 197.96547 * 15 13 12 18 18 H 1.48500 * 109.46917 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.47111 * 120.00351 * 17 15 13 20 20 H 1.48497 * 109.47104 * 240.00594 * 17 15 13 21 21 C 1.40882 * 119.68898 * 359.72780 * 12 11 10 22 22 C 1.36337 * 119.83584 * 359.97438 * 21 12 11 23 23 H 1.08998 * 109.46772 * 59.99791 * 1 2 3 24 24 H 1.08999 * 109.47008 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47038 * 299.99876 * 1 2 3 26 26 H 1.08999 * 109.46848 * 59.99696 * 5 3 2 27 27 H 1.09000 * 109.46759 * 300.00471 * 5 3 2 28 28 H 1.08995 * 109.47234 * 59.99940 * 6 5 3 29 29 H 1.08999 * 109.47042 * 299.99762 * 6 5 3 30 30 H 1.08995 * 109.47498 * 59.99954 * 7 6 5 31 31 H 1.08999 * 109.47111 * 299.99573 * 7 6 5 32 32 H 0.97000 * 119.99677 * 359.97438 * 8 7 6 33 33 H 1.08004 * 119.92093 * 359.97438 * 10 9 8 34 34 H 1.08003 * 120.08837 * 180.27756 * 11 10 9 35 35 H 0.97000 * 119.99705 * 180.02562 * 16 15 13 36 36 H 1.07996 * 120.08004 * 179.97438 * 21 12 11 37 37 H 1.08002 * 119.91432 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2749 -0.0006 6 6 4.0001 2.7421 0.0002 7 6 5.5281 2.8221 -0.0011 8 7 5.9434 4.2270 0.0003 9 6 7.2935 4.5519 -0.0010 10 6 8.2519 3.5373 0.0022 11 6 9.5792 3.8488 -0.0047 12 6 9.9823 5.1988 -0.0035 13 6 11.3545 5.5290 -0.0044 14 1 11.6810 6.4814 0.3862 15 6 12.2916 4.6226 -0.5109 16 7 11.9022 3.6458 -1.2905 17 14 14.0988 4.8060 -0.0751 18 1 14.2764 5.9814 0.8149 19 1 14.5664 3.5817 0.6232 20 1 14.8901 5.0006 -1.3166 21 6 9.0092 6.2176 -0.0010 22 6 7.6855 5.8913 -0.0002 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 3.9557 0.7809 -0.8908 27 1 3.9564 0.7805 0.8891 28 1 3.6108 3.2356 0.8906 29 1 3.6101 3.2368 -0.8893 30 1 5.9170 2.3287 -0.8917 31 1 5.9185 2.3273 0.8882 32 1 5.2753 4.9303 0.0014 33 1 7.9414 2.5029 0.0062 34 1 10.3198 3.0628 -0.0067 35 1 12.5521 3.0169 -1.6415 36 1 9.3112 7.2545 0.0003 37 1 6.9385 6.6713 0.0021 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051601515.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:36 Heat of formation + Delta-G solvation = -75.240078 kcal Electronic energy + Delta-G solvation = -18423.011893 eV Core-core repulsion = 15357.668516 eV Total energy + Delta-G solvation = -3065.343377 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.69151 -38.02906 -36.92336 -35.69271 -33.71629 -32.28607 -29.44177 -29.21042 -28.08119 -26.28464 -24.01142 -22.54486 -21.11010 -20.44469 -19.89313 -17.80600 -17.18751 -16.95638 -16.77653 -15.99816 -15.31780 -14.98520 -14.73239 -13.88095 -13.72972 -13.62982 -12.89798 -12.69782 -12.66346 -12.41478 -12.16296 -11.98793 -11.67466 -11.41636 -11.24438 -11.10916 -11.02306 -10.91841 -10.75491 -10.67532 -10.42514 -9.67315 -9.27022 -9.20767 -8.51294 -7.47402 -6.62735 -6.37195 -4.01412 1.96812 2.44355 2.91888 3.12036 3.16628 3.22146 3.36672 4.07027 4.24933 4.46971 4.76981 4.78827 4.79874 4.87609 4.96448 5.13222 5.29911 5.41424 5.46794 5.76088 5.84197 6.09632 6.17763 6.20864 6.29787 6.34793 6.95121 6.95953 7.22272 7.37839 7.49200 7.57392 7.71084 7.86296 8.17409 8.31230 8.51329 8.72457 8.82020 9.08046 9.17254 10.39057 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.048425 B = 0.002896 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.072681 B = 9667.310439 C =10150.779010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.362 6.362 3 C 0.461 3.539 4 O -0.508 6.508 5 C -0.110 4.110 6 C -0.119 4.119 7 C 0.139 3.861 8 N -0.763 5.763 9 C 0.091 3.909 10 C -0.164 4.164 11 C -0.125 4.125 12 C 0.073 3.927 13 C -0.466 4.466 14 H 0.073 0.927 15 C 0.074 3.926 16 N -0.808 5.808 17 Si 0.902 3.098 18 H -0.263 1.263 19 H -0.274 1.274 20 H -0.277 1.277 21 C -0.187 4.187 22 C -0.159 4.159 23 H 0.062 0.938 24 H 0.100 0.900 25 H 0.062 0.938 26 H 0.110 0.890 27 H 0.110 0.890 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.050 0.950 31 H 0.049 0.951 32 H 0.385 0.615 33 H 0.088 0.912 34 H 0.119 0.881 35 H 0.275 0.725 36 H 0.091 0.909 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.625 -8.114 1.870 17.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.279 6.279 3 C 0.304 3.696 4 O -0.395 6.395 5 C -0.148 4.148 6 C -0.157 4.157 7 C 0.014 3.986 8 N -0.399 5.399 9 C -0.006 4.006 10 C -0.186 4.186 11 C -0.145 4.145 12 C 0.070 3.930 13 C -0.497 4.497 14 H 0.091 0.909 15 C -0.141 4.141 16 N -0.435 5.435 17 Si 0.727 3.273 18 H -0.186 1.186 19 H -0.200 1.200 20 H -0.203 1.203 21 C -0.207 4.207 22 C -0.181 4.181 23 H 0.081 0.919 24 H 0.119 0.881 25 H 0.081 0.919 26 H 0.128 0.872 27 H 0.128 0.872 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.217 0.783 33 H 0.106 0.894 34 H 0.136 0.864 35 H 0.086 0.914 36 H 0.110 0.890 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -15.714 -8.205 1.730 17.811 hybrid contribution 0.341 0.276 0.040 0.440 sum -15.373 -7.929 1.770 17.388 Atomic orbital electron populations 1.23258 0.76430 1.03638 1.02557 1.86521 1.23427 1.33724 1.84214 1.23942 0.92422 0.81187 0.72050 1.90681 1.67338 1.36361 1.45118 1.21335 0.86919 1.00167 1.06400 1.21593 0.96262 0.93749 1.04082 1.20944 0.91768 0.85372 1.00542 1.43814 1.04158 1.04403 1.87498 1.17345 0.82640 0.93102 1.07468 1.20093 0.93422 0.95685 1.09387 1.20938 0.93575 0.97202 1.02782 1.17511 0.92914 0.91066 0.91471 1.19394 0.91192 1.02458 1.36683 0.90919 1.25799 1.01022 0.94429 0.92855 1.69866 1.36335 1.13682 1.23643 0.86369 0.82610 0.79205 0.79088 1.18646 1.19979 1.20300 1.20548 0.92113 0.97650 1.10377 1.19816 0.95795 0.92841 1.09649 0.91916 0.88124 0.91915 0.87190 0.87222 0.90672 0.90660 0.93227 0.93291 0.78273 0.89372 0.86365 0.91407 0.89043 0.89582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.56 101.05 1.07 1.31 16 2 O -0.36 -3.50 10.57 -39.26 -0.41 -3.91 16 3 C 0.46 4.99 7.96 36.01 0.29 5.28 16 4 O -0.51 -6.97 15.73 -18.75 -0.30 -7.27 16 5 C -0.11 -0.99 5.81 -27.88 -0.16 -1.15 16 6 C -0.12 -1.34 4.62 -26.73 -0.12 -1.46 16 7 C 0.14 1.96 4.89 -4.04 -0.02 1.94 16 8 N -0.76 -13.30 5.70 -58.50 -0.33 -13.63 16 9 C 0.09 2.00 6.67 -83.69 -0.56 1.45 16 10 C -0.16 -3.84 9.23 -39.77 -0.37 -4.21 16 11 C -0.13 -3.29 8.64 -39.26 -0.34 -3.63 16 12 C 0.07 2.00 5.57 -106.79 -0.60 1.40 16 13 C -0.47 -12.75 9.03 -37.87 -0.34 -13.09 16 14 H 0.07 1.93 7.91 -52.49 -0.41 1.51 16 15 C 0.07 1.92 5.13 -17.34 -0.09 1.83 16 16 N -0.81 -21.52 10.96 55.54 0.61 -20.91 16 17 Si 0.90 19.30 29.60 -169.99 -5.03 14.27 16 18 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 19 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 20 H -0.28 -5.85 7.11 56.52 0.40 -5.44 16 21 C -0.19 -4.68 9.74 -39.27 -0.38 -5.06 16 22 C -0.16 -3.62 9.82 -39.77 -0.39 -4.01 16 23 H 0.06 0.44 8.13 -51.93 -0.42 0.02 16 24 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.44 8.13 -51.93 -0.42 0.01 16 26 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.11 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 29 H 0.07 0.90 8.10 -51.93 -0.42 0.47 16 30 H 0.05 0.72 7.94 -51.93 -0.41 0.30 16 31 H 0.05 0.69 7.92 -51.93 -0.41 0.28 16 32 H 0.38 6.07 8.47 -40.82 -0.35 5.72 16 33 H 0.09 1.85 6.68 -52.48 -0.35 1.50 16 34 H 0.12 3.22 6.16 -52.48 -0.32 2.89 16 35 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 36 H 0.09 2.17 8.06 -52.49 -0.42 1.74 16 37 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 317.91 15.07 4.79 4.79 Total: -1.00 -30.80 317.91 -7.88 -38.69 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -5.19 Total: 7.38 kcal Atomic # 6 Polarization: -17.39 SS G_CDS: -2.02 Total: -19.41 kcal Atomic # 7 Polarization: -34.81 SS G_CDS: 0.28 Total: -34.54 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: -0.71 Total: -11.18 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.03 Total: 14.27 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.80 -7.88 -38.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051601515.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.553 kcal (2) G-P(sol) polarization free energy of solvation -30.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds