Wall clock time and date at job start Mon Mar 30 2020 07:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34230 * 117.00039 * 2 1 4 4 O 1.20832 * 119.99643 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00102 * 180.02562 * 3 2 1 6 6 C 1.53001 * 109.47059 * 180.02562 * 5 3 2 7 7 C 1.53000 * 109.46596 * 180.02562 * 6 5 3 8 8 N 1.46508 * 109.46644 * 180.02562 * 7 6 5 9 9 C 1.38855 * 119.99926 * 180.02562 * 8 7 6 10 10 C 1.39569 * 119.84192 * 359.72273 * 9 8 7 11 11 C 1.36337 * 120.16197 * 179.72492 * 10 9 8 12 12 C 1.40894 * 119.83280 * 0.54565 * 11 10 9 13 13 C 1.41135 * 120.15206 * 179.70471 * 12 11 10 14 14 H 1.07998 * 120.00017 * 204.62975 * 13 12 11 15 15 C 1.39868 * 120.00396 * 24.62204 * 13 12 11 16 16 N 1.30900 * 119.99549 * 17.97330 * 15 13 12 17 17 Si 1.86800 * 120.00249 * 197.96547 * 15 13 12 18 18 H 1.48500 * 109.46917 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.47111 * 120.00351 * 17 15 13 20 20 H 1.48497 * 109.47104 * 240.00594 * 17 15 13 21 21 C 1.40882 * 119.68898 * 359.72780 * 12 11 10 22 22 C 1.36337 * 119.83584 * 359.97438 * 21 12 11 23 23 H 1.08998 * 109.46772 * 59.99791 * 1 2 3 24 24 H 1.08999 * 109.47008 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47038 * 299.99876 * 1 2 3 26 26 H 1.08999 * 109.46848 * 59.99696 * 5 3 2 27 27 H 1.09000 * 109.46759 * 300.00471 * 5 3 2 28 28 H 1.08995 * 109.47234 * 59.99940 * 6 5 3 29 29 H 1.08999 * 109.47042 * 299.99762 * 6 5 3 30 30 H 1.08995 * 109.47498 * 59.99954 * 7 6 5 31 31 H 1.08999 * 109.47111 * 299.99573 * 7 6 5 32 32 H 0.97000 * 119.99677 * 359.97438 * 8 7 6 33 33 H 1.08004 * 119.92093 * 359.97438 * 10 9 8 34 34 H 1.08003 * 120.08837 * 180.27756 * 11 10 9 35 35 H 0.97000 * 119.99705 * 180.02562 * 16 15 13 36 36 H 1.07996 * 120.08004 * 179.97438 * 21 12 11 37 37 H 1.08002 * 119.91432 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2749 -0.0006 6 6 4.0001 2.7421 0.0002 7 6 5.5281 2.8221 -0.0011 8 7 5.9434 4.2270 0.0003 9 6 7.2935 4.5519 -0.0010 10 6 8.2519 3.5373 0.0022 11 6 9.5792 3.8488 -0.0047 12 6 9.9823 5.1988 -0.0035 13 6 11.3545 5.5290 -0.0044 14 1 11.6810 6.4814 0.3862 15 6 12.2916 4.6226 -0.5109 16 7 11.9022 3.6458 -1.2905 17 14 14.0988 4.8060 -0.0751 18 1 14.2764 5.9814 0.8149 19 1 14.5664 3.5817 0.6232 20 1 14.8901 5.0006 -1.3166 21 6 9.0092 6.2176 -0.0010 22 6 7.6855 5.8913 -0.0002 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 3.9557 0.7809 -0.8908 27 1 3.9564 0.7805 0.8891 28 1 3.6108 3.2356 0.8906 29 1 3.6101 3.2368 -0.8893 30 1 5.9170 2.3287 -0.8917 31 1 5.9185 2.3273 0.8882 32 1 5.2753 4.9303 0.0014 33 1 7.9414 2.5029 0.0062 34 1 10.3198 3.0628 -0.0067 35 1 12.5521 3.0169 -1.6415 36 1 9.3112 7.2545 0.0003 37 1 6.9385 6.6713 0.0021 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051601515.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:35 Heat of formation + Delta-G solvation = -92.941768 kcal Electronic energy + Delta-G solvation = -18423.779496 eV Core-core repulsion = 15357.668516 eV Total energy + Delta-G solvation = -3066.110980 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.50192 -39.76984 -37.80827 -37.07142 -35.32114 -33.72285 -31.32561 -30.70395 -29.10071 -27.45133 -25.69053 -23.81974 -22.63109 -21.63122 -21.45471 -19.13498 -18.64109 -17.74064 -17.73468 -17.52973 -16.76605 -16.23301 -16.18469 -15.58397 -14.62775 -14.61253 -14.55437 -14.24430 -13.88655 -13.78831 -13.58215 -13.23988 -12.98595 -12.79085 -12.71879 -12.51638 -12.36440 -12.27033 -11.92453 -11.77524 -11.58128 -11.53694 -11.15295 -11.03315 -10.26434 -9.38371 -8.53471 -8.14451 -5.98777 1.12011 1.15931 1.20359 1.41657 1.55783 1.59652 1.74040 2.29109 2.85817 2.95017 3.69235 3.86922 4.01587 4.03850 4.26765 4.31808 4.35283 4.47636 4.52807 4.59305 4.63690 4.71903 4.77357 5.05350 5.15712 5.16955 5.20200 5.30426 5.39255 5.48396 5.71879 5.82088 5.98729 6.21052 6.41664 6.69179 6.70656 6.89706 7.10421 7.16819 7.32844 8.50116 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.048425 B = 0.002896 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.072681 B = 9667.310439 C =10150.779010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.365 6.365 3 C 0.463 3.537 4 O -0.543 6.543 5 C -0.106 4.106 6 C -0.106 4.106 7 C 0.136 3.864 8 N -0.756 5.756 9 C 0.111 3.889 10 C -0.173 4.173 11 C -0.144 4.144 12 C 0.033 3.967 13 C -0.505 4.505 14 H 0.066 0.934 15 C 0.031 3.969 16 N -0.841 5.841 17 Si 0.976 3.024 18 H -0.262 1.262 19 H -0.266 1.266 20 H -0.269 1.269 21 C -0.197 4.197 22 C -0.168 4.168 23 H 0.060 0.940 24 H 0.131 0.869 25 H 0.060 0.940 26 H 0.130 0.870 27 H 0.131 0.869 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.051 0.949 31 H 0.055 0.945 32 H 0.395 0.605 33 H 0.111 0.889 34 H 0.101 0.899 35 H 0.282 0.718 36 H 0.095 0.905 37 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.686 -9.166 2.101 19.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.281 6.281 3 C 0.308 3.692 4 O -0.433 6.433 5 C -0.143 4.143 6 C -0.144 4.144 7 C 0.011 3.989 8 N -0.391 5.391 9 C 0.011 3.989 10 C -0.195 4.195 11 C -0.164 4.164 12 C 0.030 3.970 13 C -0.536 4.536 14 H 0.084 0.916 15 C -0.181 4.181 16 N -0.469 5.469 17 Si 0.798 3.202 18 H -0.186 1.186 19 H -0.190 1.190 20 H -0.194 1.194 21 C -0.218 4.218 22 C -0.190 4.190 23 H 0.079 0.921 24 H 0.149 0.851 25 H 0.079 0.921 26 H 0.148 0.852 27 H 0.149 0.851 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.230 0.770 33 H 0.129 0.871 34 H 0.119 0.881 35 H 0.093 0.907 36 H 0.113 0.887 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -16.831 -9.280 1.962 19.319 hybrid contribution 0.421 0.563 -0.038 0.703 sum -16.410 -8.717 1.924 18.681 Atomic orbital electron populations 1.23528 0.75021 1.05638 1.02389 1.86512 1.24872 1.33008 1.83735 1.24240 0.93023 0.80975 0.70983 1.90672 1.68221 1.37476 1.46979 1.21346 0.85828 0.98768 1.08399 1.21407 0.93921 0.95467 1.03585 1.21125 0.93689 0.83244 1.00823 1.43928 1.02526 1.06529 1.86104 1.17458 0.84489 0.92535 1.04369 1.20283 0.92637 0.97331 1.09251 1.20891 0.94616 0.96546 1.04336 1.17848 0.93680 0.92092 0.93377 1.19599 0.92233 1.03164 1.38630 0.91570 1.26608 1.05431 0.93854 0.92179 1.69919 1.38071 1.14532 1.24383 0.85250 0.76726 0.79270 0.78934 1.18573 1.19035 1.19396 1.20751 0.93056 0.97581 1.10364 1.20116 0.95550 0.94194 1.09175 0.92149 0.85099 0.92092 0.85241 0.85088 0.91104 0.91308 0.93056 0.92682 0.77044 0.87085 0.88128 0.90742 0.88665 0.86668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.56 113.37 1.20 1.53 16 2 O -0.37 -6.26 10.57 -51.42 -0.54 -6.80 16 3 C 0.46 9.10 7.96 71.24 0.57 9.67 16 4 O -0.54 -14.26 15.73 21.95 0.35 -13.92 16 5 C -0.11 -1.58 5.81 29.85 0.17 -1.41 16 6 C -0.11 -2.11 4.62 30.59 0.14 -1.96 16 7 C 0.14 3.43 4.89 86.38 0.42 3.85 16 8 N -0.76 -24.41 5.70 -338.99 -1.93 -26.34 16 9 C 0.11 4.69 6.67 38.67 0.26 4.95 16 10 C -0.17 -7.98 9.23 22.15 0.20 -7.78 16 11 C -0.14 -7.74 8.64 22.48 0.19 -7.55 16 12 C 0.03 1.85 5.57 -21.27 -0.12 1.73 16 13 C -0.50 -28.62 9.03 23.38 0.21 -28.40 16 14 H 0.07 3.66 7.91 -2.91 -0.02 3.64 16 15 C 0.03 1.64 5.13 85.23 0.44 2.08 16 16 N -0.84 -45.87 10.96 21.82 0.24 -45.64 16 17 Si 0.98 40.24 29.60 68.60 2.03 42.27 16 18 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 19 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 20 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 21 C -0.20 -10.02 9.74 22.47 0.22 -9.80 16 22 C -0.17 -7.46 9.82 22.15 0.22 -7.25 16 23 H 0.06 0.76 8.13 -2.39 -0.02 0.74 16 24 H 0.13 0.74 8.14 -2.39 -0.02 0.73 16 25 H 0.06 0.76 8.13 -2.38 -0.02 0.74 16 26 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.13 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.07 1.50 8.10 -2.39 -0.02 1.48 16 29 H 0.07 1.48 8.10 -2.39 -0.02 1.46 16 30 H 0.05 1.33 7.94 -2.39 -0.02 1.31 16 31 H 0.06 1.37 7.92 -2.39 -0.02 1.36 16 32 H 0.40 11.34 8.47 -92.71 -0.79 10.56 16 33 H 0.11 4.50 6.68 -2.91 -0.02 4.48 16 34 H 0.10 5.68 6.16 -2.91 -0.02 5.66 16 35 H 0.28 13.93 8.30 -92.71 -0.77 13.16 16 36 H 0.10 4.60 8.06 -2.91 -0.02 4.58 16 37 H 0.12 4.37 8.06 -2.91 -0.02 4.34 16 Total: -1.00 -67.76 317.91 4.55 -63.21 By element: Atomic # 1 Polarization: 27.28 SS G_CDS: 0.29 Total: 27.56 kcal Atomic # 6 Polarization: -44.47 SS G_CDS: 4.12 Total: -40.35 kcal Atomic # 7 Polarization: -70.28 SS G_CDS: -1.69 Total: -71.97 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: -0.20 Total: -20.72 kcal Atomic # 14 Polarization: 40.24 SS G_CDS: 2.03 Total: 42.27 kcal Total: -67.76 4.55 -63.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051601515.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.729 kcal (2) G-P(sol) polarization free energy of solvation -67.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds