Wall clock time and date at job start Mon Mar 30 2020 06:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47226 * 2 1 4 4 H 1.08997 * 109.46682 * 305.64939 * 3 2 1 5 5 C 1.50694 * 109.46793 * 185.65038 * 3 2 1 6 6 H 1.08001 * 119.99888 * 239.99841 * 5 3 2 7 7 C 1.37876 * 120.00261 * 60.00106 * 5 3 2 8 8 N 1.31507 * 119.99940 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 120.00161 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47088 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46977 * 119.99945 * 9 7 5 12 12 H 1.48495 * 109.47540 * 239.99969 * 9 7 5 13 13 N 1.46903 * 109.46890 * 65.64786 * 3 2 1 14 14 C 1.46902 * 110.99889 * 208.17999 * 13 3 2 15 15 H 1.09003 * 110.82778 * 28.41178 * 14 13 3 16 16 C 1.54699 * 110.96884 * 264.68356 * 14 13 3 17 17 O 1.43765 * 102.79156 * 267.13336 * 16 14 13 18 18 C 1.36146 * 109.23765 * 332.22228 * 17 16 14 19 19 C 1.39193 * 129.83833 * 198.44722 * 18 17 16 20 20 C 1.38425 * 120.20085 * 180.89881 * 19 18 17 21 21 O 1.35888 * 119.88302 * 180.02562 * 20 19 18 22 22 C 1.38788 * 120.22764 * 0.28072 * 20 19 18 23 23 C 1.38258 * 119.71270 * 359.34823 * 22 20 19 24 24 C 1.37785 * 120.04533 * 0.48615 * 23 22 20 25 25 H 1.08997 * 109.47394 * 294.27853 * 1 2 3 26 26 H 1.09005 * 109.47009 * 54.27963 * 1 2 3 27 27 H 1.09002 * 109.47168 * 174.27906 * 1 2 3 28 28 H 1.09000 * 109.46888 * 239.99757 * 2 1 3 29 29 H 1.09000 * 109.46825 * 119.99921 * 2 1 3 30 30 H 0.97006 * 120.00041 * 179.97438 * 8 7 5 31 31 H 1.00898 * 111.00153 * 332.13825 * 13 3 2 32 32 H 1.09003 * 110.75120 * 25.46077 * 16 14 13 33 33 H 1.09004 * 110.74554 * 148.62486 * 16 14 13 34 34 H 1.08006 * 119.90010 * 0.92544 * 19 18 17 35 35 H 0.96704 * 114.00140 * 90.00506 * 21 20 19 36 36 H 1.07994 * 120.14408 * 179.60596 * 22 20 19 37 37 H 1.07996 * 119.97334 * 180.22712 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5964 1.9847 -0.8351 5 6 3.5405 1.4447 -0.1399 6 1 4.1541 1.8864 0.6314 7 6 4.1300 0.8830 -1.2525 8 7 3.3829 0.3448 -2.1915 9 14 5.9899 0.8864 -1.4262 10 1 6.5964 1.5468 -0.2425 11 1 6.4810 -0.5121 -1.5179 12 1 6.3709 1.6264 -2.6559 13 7 1.6648 2.0945 1.2618 14 6 1.5106 3.5441 1.0798 15 1 1.2104 3.7767 0.0581 16 6 2.8118 4.2909 1.4573 17 8 2.5983 4.6235 2.8396 18 6 1.2620 4.7430 3.0710 19 6 0.5907 5.3677 4.1182 20 6 -0.7926 5.3530 4.1658 21 8 -1.4413 5.9654 5.1909 22 6 -1.5191 4.7106 3.1730 23 6 -0.8556 4.0958 2.1273 24 6 0.5212 4.1135 2.0784 25 1 -0.3634 0.4225 0.9367 26 1 -0.3633 0.6000 -0.8344 27 1 -0.3633 -1.0226 -0.1024 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.7976 -0.0500 -2.9745 31 1 0.8247 1.6866 1.6437 32 1 3.6777 3.6382 1.3465 33 1 2.9290 5.1913 0.8542 34 1 1.1509 5.8657 4.8958 35 1 -1.6531 6.8940 5.0236 36 1 -2.5981 4.6945 3.2148 37 1 -1.4169 3.5978 1.3506 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054183077.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:45 Heat of formation + Delta-G solvation = -46.373047 kcal Electronic energy + Delta-G solvation = -19959.058438 eV Core-core repulsion = 16894.966830 eV Total energy + Delta-G solvation = -3064.091609 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.90147 -38.62388 -36.23906 -35.74680 -32.86604 -31.56968 -30.21183 -29.12666 -27.55264 -26.32754 -23.12696 -22.78835 -22.00481 -20.74561 -19.65863 -18.41149 -16.65704 -16.61205 -16.24976 -15.94711 -15.10388 -14.76129 -14.63294 -13.93809 -13.83351 -13.78401 -13.19233 -12.82496 -12.39290 -12.29078 -11.90575 -11.76931 -11.50497 -11.24192 -11.15552 -10.87062 -10.65568 -10.55427 -10.46693 -9.96248 -9.72688 -9.68798 -9.15800 -8.72813 -8.41021 -7.95675 -7.39125 -6.03856 -4.08780 1.24253 1.46449 3.27358 3.36244 3.40483 3.41496 3.73547 4.32402 4.39173 4.73261 4.97010 5.01297 5.17808 5.25551 5.40162 5.40364 5.71857 5.86331 5.94577 6.08820 6.11158 6.12868 6.30557 6.33698 6.37207 6.43338 6.58514 6.62920 6.78250 6.98447 7.08031 7.32556 7.39924 7.60155 7.70326 7.84679 8.16811 8.30710 8.62090 8.98647 9.56928 11.01345 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.028385 B = 0.005397 C = 0.004689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.195452 B = 5186.986749 C = 5970.011342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.128 4.128 3 C 0.216 3.784 4 H 0.006 0.994 5 C -0.496 4.496 6 H 0.064 0.936 7 C 0.057 3.943 8 N -0.894 5.894 9 Si 0.893 3.107 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.286 1.286 13 N -0.669 5.669 14 C 0.111 3.889 15 H 0.069 0.931 16 C 0.058 3.942 17 O -0.299 6.299 18 C 0.143 3.857 19 C -0.178 4.178 20 C 0.135 3.865 21 O -0.497 6.497 22 C -0.182 4.182 23 C -0.050 4.050 24 C -0.184 4.184 25 H 0.034 0.966 26 H 0.042 0.958 27 H 0.038 0.962 28 H 0.101 0.899 29 H 0.042 0.958 30 H 0.260 0.740 31 H 0.326 0.674 32 H 0.130 0.870 33 H 0.070 0.930 34 H 0.130 0.870 35 H 0.389 0.611 36 H 0.129 0.871 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.455 9.399 7.041 14.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.166 4.166 3 C 0.109 3.891 4 H 0.024 0.976 5 C -0.535 4.535 6 H 0.082 0.918 7 C -0.144 4.144 8 N -0.534 5.534 9 Si 0.721 3.279 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.212 1.212 13 N -0.302 5.302 14 C 0.001 3.999 15 H 0.086 0.914 16 C -0.017 4.017 17 O -0.212 6.212 18 C 0.096 3.904 19 C -0.197 4.197 20 C 0.091 3.909 21 O -0.307 6.307 22 C -0.201 4.201 23 C -0.069 4.069 24 C -0.186 4.186 25 H 0.053 0.947 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.119 0.881 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.145 0.855 32 H 0.147 0.853 33 H 0.088 0.912 34 H 0.148 0.852 35 H 0.245 0.755 36 H 0.147 0.853 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -7.518 8.809 7.485 13.789 hybrid contribution 0.033 0.314 -1.036 1.083 sum -7.485 9.123 6.448 13.447 Atomic orbital electron populations 1.21887 0.99560 0.99866 0.99496 1.21803 0.91284 1.00287 1.03256 1.19361 0.95761 0.90182 0.83794 0.97619 1.21259 0.91048 1.36913 1.04257 0.91808 1.24958 0.98127 0.95469 0.95834 1.69873 1.34686 1.39269 1.09542 0.86514 0.85697 0.77744 0.77919 1.19675 1.21088 1.21198 1.60861 1.38303 0.99308 1.31704 1.21578 0.90764 0.91473 0.96134 0.91353 1.24165 1.01055 0.98606 0.77838 1.86835 1.19240 1.84962 1.30118 1.19357 0.84375 0.92602 0.94084 1.20338 0.93226 1.05933 1.00182 1.17899 0.89031 0.96383 0.87599 1.84817 1.77604 1.29023 1.39289 1.21153 1.00128 1.03929 0.94877 1.20174 0.92236 0.97065 0.97375 1.21199 0.94509 1.02726 1.00139 0.94669 0.93859 0.94264 0.88065 0.93944 0.93048 0.85459 0.85269 0.91212 0.85211 0.75537 0.85283 0.85597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 9.66 37.16 0.36 -2.47 16 2 C -0.13 -2.91 5.34 -26.73 -0.14 -3.06 16 3 C 0.22 5.10 2.03 -68.86 -0.14 4.96 16 4 H 0.01 0.16 7.35 -51.93 -0.38 -0.22 16 5 C -0.50 -12.94 8.30 -34.44 -0.29 -13.23 16 6 H 0.06 1.68 6.34 -52.49 -0.33 1.35 16 7 C 0.06 1.51 5.29 -17.82 -0.09 1.42 16 8 N -0.89 -24.51 11.29 55.43 0.63 -23.89 16 9 Si 0.89 20.78 29.54 -169.99 -5.02 15.76 16 10 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 13 N -0.67 -13.86 6.19 -100.72 -0.62 -14.49 16 14 C 0.11 2.05 3.45 -67.49 -0.23 1.82 16 15 H 0.07 1.29 7.36 -51.93 -0.38 0.90 16 16 C 0.06 1.05 7.64 38.05 0.29 1.34 16 17 O -0.30 -5.48 11.10 -20.21 -0.22 -5.70 16 18 C 0.14 2.40 7.03 -38.97 -0.27 2.13 16 19 C -0.18 -2.58 10.00 -39.16 -0.39 -2.97 16 20 C 0.14 1.77 6.69 -39.31 -0.26 1.50 16 21 O -0.50 -5.40 13.49 -19.39 -0.26 -5.66 16 22 C -0.18 -2.31 10.00 -39.37 -0.39 -2.70 16 23 C -0.05 -0.70 10.03 -39.74 -0.40 -1.10 16 24 C -0.18 -3.03 5.60 -104.05 -0.58 -3.61 16 25 H 0.03 0.60 6.66 -51.93 -0.35 0.25 16 26 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.10 2.60 5.94 -51.93 -0.31 2.29 16 29 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 30 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 31 H 0.33 6.40 6.23 -39.29 -0.24 6.16 16 32 H 0.13 2.57 6.15 -51.93 -0.32 2.25 16 33 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.13 1.70 8.06 -52.48 -0.42 1.28 16 35 H 0.39 2.17 9.06 45.56 0.41 2.58 16 36 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 37 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 304.12 15.07 4.58 4.58 Total: -1.00 -28.99 304.12 -7.47 -36.46 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -4.00 Total: 8.90 kcal Atomic # 6 Polarization: -13.41 SS G_CDS: -2.55 Total: -15.96 kcal Atomic # 7 Polarization: -38.38 SS G_CDS: 0.00 Total: -38.37 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: -0.49 Total: -11.37 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -28.99 -7.47 -36.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183077.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.916 kcal (2) G-P(sol) polarization free energy of solvation -28.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds