Wall clock time and date at job start Mon Mar 30 2020 06:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47226 * 2 1 4 4 H 1.08997 * 109.46682 * 305.64939 * 3 2 1 5 5 C 1.50694 * 109.46793 * 185.65038 * 3 2 1 6 6 H 1.08001 * 119.99888 * 239.99841 * 5 3 2 7 7 C 1.37876 * 120.00261 * 60.00106 * 5 3 2 8 8 N 1.31507 * 119.99940 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 120.00161 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47088 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46977 * 119.99945 * 9 7 5 12 12 H 1.48495 * 109.47540 * 239.99969 * 9 7 5 13 13 N 1.46903 * 109.46890 * 65.64786 * 3 2 1 14 14 C 1.46902 * 110.99889 * 208.17999 * 13 3 2 15 15 H 1.09003 * 110.82778 * 28.41178 * 14 13 3 16 16 C 1.54699 * 110.96884 * 264.68356 * 14 13 3 17 17 O 1.43765 * 102.79156 * 267.13336 * 16 14 13 18 18 C 1.36146 * 109.23765 * 332.22228 * 17 16 14 19 19 C 1.39193 * 129.83833 * 198.44722 * 18 17 16 20 20 C 1.38425 * 120.20085 * 180.89881 * 19 18 17 21 21 O 1.35888 * 119.88302 * 180.02562 * 20 19 18 22 22 C 1.38788 * 120.22764 * 0.28072 * 20 19 18 23 23 C 1.38258 * 119.71270 * 359.34823 * 22 20 19 24 24 C 1.37785 * 120.04533 * 0.48615 * 23 22 20 25 25 H 1.08997 * 109.47394 * 294.27853 * 1 2 3 26 26 H 1.09005 * 109.47009 * 54.27963 * 1 2 3 27 27 H 1.09002 * 109.47168 * 174.27906 * 1 2 3 28 28 H 1.09000 * 109.46888 * 239.99757 * 2 1 3 29 29 H 1.09000 * 109.46825 * 119.99921 * 2 1 3 30 30 H 0.97006 * 120.00041 * 179.97438 * 8 7 5 31 31 H 1.00898 * 111.00153 * 332.13825 * 13 3 2 32 32 H 1.09003 * 110.75120 * 25.46077 * 16 14 13 33 33 H 1.09004 * 110.74554 * 148.62486 * 16 14 13 34 34 H 1.08006 * 119.90010 * 0.92544 * 19 18 17 35 35 H 0.96704 * 114.00140 * 90.00506 * 21 20 19 36 36 H 1.07994 * 120.14408 * 179.60596 * 22 20 19 37 37 H 1.07996 * 119.97334 * 180.22712 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5964 1.9847 -0.8351 5 6 3.5405 1.4447 -0.1399 6 1 4.1541 1.8864 0.6314 7 6 4.1300 0.8830 -1.2525 8 7 3.3829 0.3448 -2.1915 9 14 5.9899 0.8864 -1.4262 10 1 6.5964 1.5468 -0.2425 11 1 6.4810 -0.5121 -1.5179 12 1 6.3709 1.6264 -2.6559 13 7 1.6648 2.0945 1.2618 14 6 1.5106 3.5441 1.0798 15 1 1.2104 3.7767 0.0581 16 6 2.8118 4.2909 1.4573 17 8 2.5983 4.6235 2.8396 18 6 1.2620 4.7430 3.0710 19 6 0.5907 5.3677 4.1182 20 6 -0.7926 5.3530 4.1658 21 8 -1.4413 5.9654 5.1909 22 6 -1.5191 4.7106 3.1730 23 6 -0.8556 4.0958 2.1273 24 6 0.5212 4.1135 2.0784 25 1 -0.3634 0.4225 0.9367 26 1 -0.3633 0.6000 -0.8344 27 1 -0.3633 -1.0226 -0.1024 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.7976 -0.0500 -2.9745 31 1 0.8247 1.6866 1.6437 32 1 3.6777 3.6382 1.3465 33 1 2.9290 5.1913 0.8542 34 1 1.1509 5.8657 4.8958 35 1 -1.6531 6.8940 5.0236 36 1 -2.5981 4.6945 3.2148 37 1 -1.4169 3.5978 1.3506 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054183077.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:45 Heat of formation + Delta-G solvation = -66.987653 kcal Electronic energy + Delta-G solvation = -19959.952355 eV Core-core repulsion = 16894.966830 eV Total energy + Delta-G solvation = -3064.985525 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.15753 -39.66411 -37.95863 -36.80909 -34.60985 -33.30272 -31.39367 -30.45785 -28.92695 -28.19188 -24.75922 -24.13860 -23.15448 -22.10706 -21.46397 -19.43736 -18.51050 -17.85079 -17.54636 -17.26726 -16.66511 -16.25552 -15.93986 -15.57357 -15.12727 -15.04324 -14.67026 -14.28297 -13.97303 -13.78935 -13.28865 -13.14745 -12.96687 -12.87235 -12.69882 -12.55262 -12.37783 -11.92748 -11.75559 -11.58745 -11.53018 -11.35749 -11.00640 -10.42450 -9.85303 -9.19797 -9.04300 -8.06435 -6.17599 0.15057 0.35292 1.40571 1.44411 1.54767 2.23903 2.43923 2.58899 3.19493 3.35240 3.46320 3.51195 3.87411 3.96750 4.18832 4.28222 4.41848 4.48611 4.55717 4.59512 4.68577 4.73217 4.80091 4.99051 5.08171 5.18718 5.23069 5.34576 5.36874 5.46691 5.54319 5.57939 5.75506 5.88291 6.13411 6.34335 6.45801 6.86110 6.88028 6.95408 7.51420 8.96958 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.028385 B = 0.005397 C = 0.004689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.195452 B = 5186.986749 C = 5970.011342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.124 4.124 3 C 0.225 3.775 4 H -0.020 1.020 5 C -0.508 4.508 6 H 0.054 0.946 7 C 0.014 3.986 8 N -0.918 5.918 9 Si 0.950 3.050 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.281 1.281 13 N -0.672 5.672 14 C 0.110 3.890 15 H 0.060 0.940 16 C 0.060 3.940 17 O -0.316 6.316 18 C 0.118 3.882 19 C -0.183 4.183 20 C 0.149 3.851 21 O -0.500 6.500 22 C -0.172 4.172 23 C -0.049 4.049 24 C -0.200 4.200 25 H 0.054 0.946 26 H 0.040 0.960 27 H 0.056 0.944 28 H 0.071 0.929 29 H 0.033 0.967 30 H 0.260 0.740 31 H 0.332 0.668 32 H 0.104 0.896 33 H 0.089 0.911 34 H 0.140 0.860 35 H 0.415 0.585 36 H 0.160 0.840 37 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.118 10.301 8.260 16.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.163 4.163 3 C 0.117 3.883 4 H -0.003 1.003 5 C -0.547 4.547 6 H 0.073 0.927 7 C -0.185 4.185 8 N -0.558 5.558 9 Si 0.777 3.223 10 H -0.195 1.195 11 H -0.210 1.210 12 H -0.207 1.207 13 N -0.305 5.305 14 C 0.000 4.000 15 H 0.078 0.922 16 C -0.015 4.015 17 O -0.230 6.230 18 C 0.071 3.929 19 C -0.202 4.202 20 C 0.104 3.896 21 O -0.314 6.314 22 C -0.190 4.190 23 C -0.068 4.068 24 C -0.201 4.201 25 H 0.073 0.927 26 H 0.059 0.941 27 H 0.075 0.925 28 H 0.089 0.911 29 H 0.052 0.948 30 H 0.069 0.931 31 H 0.152 0.848 32 H 0.122 0.878 33 H 0.107 0.893 34 H 0.158 0.842 35 H 0.275 0.725 36 H 0.177 0.823 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -9.199 9.743 8.720 15.987 hybrid contribution 0.443 0.125 -1.307 1.385 sum -8.756 9.869 7.414 15.133 Atomic orbital electron populations 1.21746 0.96244 1.01189 1.00458 1.21642 0.94293 0.99113 1.01252 1.19109 0.94392 0.90652 0.84150 1.00291 1.21517 0.92540 1.36565 1.04035 0.92748 1.25610 1.01817 0.95345 0.95699 1.69991 1.36037 1.39917 1.09882 0.85623 0.81290 0.77573 0.77838 1.19508 1.20986 1.20730 1.60735 1.38906 1.00796 1.30043 1.21507 0.92019 0.90023 0.96458 0.92234 1.24034 0.99916 0.98999 0.78533 1.86781 1.20712 1.85564 1.29906 1.19604 0.83634 0.94231 0.95386 1.20565 0.94144 1.05725 0.99788 1.17937 0.88466 0.95659 0.87534 1.84761 1.77020 1.31105 1.38480 1.21467 1.01565 1.02290 0.93704 1.20414 0.91239 0.96852 0.98253 1.21060 0.95296 1.04034 0.99722 0.92675 0.94090 0.92504 0.91097 0.94777 0.93104 0.84794 0.87784 0.89253 0.84242 0.72460 0.82283 0.84052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.06 9.66 71.98 0.70 -4.37 16 2 C -0.12 -5.74 5.34 30.60 0.16 -5.58 16 3 C 0.22 10.89 2.03 44.17 0.09 10.98 16 4 H -0.02 -1.08 7.35 -2.39 -0.02 -1.10 16 5 C -0.51 -27.23 8.30 25.60 0.21 -27.02 16 6 H 0.05 2.97 6.34 -2.91 -0.02 2.95 16 7 C 0.01 0.74 5.29 84.66 0.45 1.19 16 8 N -0.92 -51.43 11.29 21.45 0.24 -51.19 16 9 Si 0.95 43.36 29.54 68.60 2.03 45.38 16 10 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 11 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 12 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 13 N -0.67 -28.21 6.19 -472.57 -2.93 -31.14 16 14 C 0.11 4.12 3.45 45.06 0.16 4.28 16 15 H 0.06 2.31 7.36 -2.39 -0.02 2.29 16 16 C 0.06 2.24 7.64 72.56 0.55 2.79 16 17 O -0.32 -11.73 11.10 -95.21 -1.06 -12.79 16 18 C 0.12 3.87 7.03 22.67 0.16 4.03 16 19 C -0.18 -4.96 10.00 22.54 0.23 -4.73 16 20 C 0.15 3.38 6.69 22.45 0.15 3.53 16 21 O -0.50 -8.81 13.49 -92.29 -1.25 -10.06 16 22 C -0.17 -3.70 10.00 22.41 0.22 -3.48 16 23 C -0.05 -1.25 10.03 22.17 0.22 -1.03 16 24 C -0.20 -6.38 5.60 -19.50 -0.11 -6.49 16 25 H 0.05 1.77 6.66 -2.39 -0.02 1.76 16 26 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 27 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.07 3.73 5.94 -2.39 -0.01 3.72 16 29 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.26 13.92 8.31 -92.70 -0.77 13.15 16 31 H 0.33 12.91 6.23 -89.70 -0.56 12.35 16 32 H 0.10 4.35 6.15 -2.39 -0.01 4.33 16 33 H 0.09 2.86 8.14 -2.38 -0.02 2.84 16 34 H 0.14 3.40 8.06 -2.91 -0.02 3.38 16 35 H 0.42 2.81 9.06 -74.05 -0.67 2.13 16 36 H 0.16 2.49 8.06 -2.91 -0.02 2.47 16 37 H 0.14 3.13 8.06 -2.91 -0.02 3.11 16 Total: -1.00 -63.00 304.12 0.10 -62.90 By element: Atomic # 1 Polarization: 22.93 SS G_CDS: -0.13 Total: 22.80 kcal Atomic # 6 Polarization: -29.10 SS G_CDS: 3.19 Total: -25.91 kcal Atomic # 7 Polarization: -79.64 SS G_CDS: -2.68 Total: -82.33 kcal Atomic # 8 Polarization: -20.54 SS G_CDS: -2.30 Total: -22.85 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.38 kcal Total: -63.00 0.10 -62.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183077.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.087 kcal (2) G-P(sol) polarization free energy of solvation -63.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds