Wall clock time and date at job start Mon Mar 30 2020 06:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35652 * 117.00252 * 2 1 4 4 C 1.38684 * 120.14951 * 359.97438 * 3 2 1 5 5 C 1.38086 * 120.08720 * 180.02562 * 4 3 2 6 6 C 1.38558 * 120.39981 * 359.95645 * 5 4 3 7 7 C 1.37770 * 120.30749 * 0.02562 * 6 5 4 8 8 C 1.39761 * 119.90119 * 359.97438 * 7 6 5 9 9 C 1.47430 * 120.19780 * 179.97438 * 8 7 6 10 10 O 1.21626 * 120.00416 * 139.37783 * 9 8 7 11 11 N 1.34782 * 119.99739 * 319.37953 * 9 8 7 12 12 C 1.36902 * 120.00305 * 6.27039 * 11 9 8 13 13 H 1.08006 * 119.99667 * 327.14791 * 12 11 9 14 14 C 1.39022 * 120.00238 * 147.14493 * 12 11 9 15 15 N 1.31378 * 119.99720 * 342.15119 * 14 12 11 16 16 Si 1.86801 * 120.00021 * 162.14936 * 14 12 11 17 17 H 1.48508 * 109.47032 * 60.00126 * 16 14 12 18 18 H 1.48497 * 109.46987 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47235 * 300.00102 * 16 14 12 20 20 C 1.46503 * 119.99873 * 186.27199 * 11 9 8 21 21 C 1.52997 * 109.47085 * 295.60494 * 20 11 9 22 22 C 1.53002 * 109.46813 * 55.60527 * 20 11 9 23 23 H 1.08998 * 109.46931 * 59.99932 * 1 2 3 24 24 H 1.09002 * 109.47321 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46759 * 300.00308 * 1 2 3 26 26 H 1.08002 * 119.95908 * 359.97438 * 4 3 2 27 27 H 1.07997 * 119.79408 * 179.97438 * 5 4 3 28 28 H 1.08003 * 119.84664 * 180.02562 * 6 5 4 29 29 H 1.08004 * 120.04737 * 179.71967 * 7 6 5 30 30 H 0.97002 * 119.99714 * 179.97438 * 15 14 12 31 31 H 1.08998 * 109.46818 * 175.60035 * 20 11 9 32 32 H 1.09002 * 109.47333 * 65.13732 * 21 20 11 33 33 H 1.09000 * 109.47268 * 185.13480 * 21 20 11 34 34 H 1.08993 * 109.47258 * 305.13358 * 21 20 11 35 35 H 1.08991 * 109.47563 * 59.51215 * 22 20 11 36 36 H 1.09006 * 109.46681 * 179.51223 * 22 20 11 37 37 H 1.09000 * 109.47220 * 299.50491 * 22 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2086 0.0000 4 6 1.2927 2.3737 -0.0005 5 6 1.9210 3.6034 -0.0011 6 6 3.3042 3.6840 -0.0002 7 6 4.0675 2.5370 0.0007 8 6 3.4448 1.2858 0.0013 9 6 4.2552 0.0542 0.0017 10 8 3.9218 -0.8930 0.6879 11 7 5.3657 -0.0220 -0.7583 12 6 5.8127 1.0840 -1.4301 13 1 5.1064 1.8090 -1.8068 14 6 7.1757 1.2738 -1.6273 15 7 8.0436 0.6137 -0.8945 16 14 7.7731 2.4675 -2.9342 17 1 7.2612 3.8285 -2.6326 18 1 9.2578 2.4885 -2.9438 19 1 7.2749 2.0348 -4.2646 20 6 6.0945 -1.2884 -0.8656 21 6 6.6600 -1.6689 0.5041 22 6 5.1426 -2.3852 -1.3471 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 0.2141 2.3193 -0.0014 27 1 1.3306 4.5077 -0.0019 28 1 3.7863 4.6505 -0.0002 29 1 5.1454 2.6048 -0.0031 30 1 8.9947 0.7459 -1.0323 31 1 6.9117 -1.1780 -1.5783 32 1 5.8395 -1.8683 1.1934 33 1 7.2779 -2.5616 0.4068 34 1 7.2657 -0.8480 0.8880 35 1 4.7330 -2.1101 -2.3189 36 1 5.6868 -3.3256 -1.4352 37 1 4.3300 -2.5016 -0.6300 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057520301.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:16 Heat of formation + Delta-G solvation = -34.386758 kcal Electronic energy + Delta-G solvation = -20764.163424 eV Core-core repulsion = 17700.591580 eV Total energy + Delta-G solvation = -3063.571844 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.86886 -38.34908 -36.70279 -34.87709 -32.35991 -31.36157 -29.67802 -29.56950 -26.91163 -25.95153 -24.90237 -23.03901 -21.64340 -20.66043 -18.82311 -18.03841 -16.91966 -15.68480 -15.53937 -15.27170 -14.79064 -14.36979 -14.18016 -13.76904 -13.51558 -12.99758 -12.87334 -12.44937 -12.31590 -11.89435 -11.82564 -11.61534 -11.25935 -11.07639 -10.99430 -10.91321 -10.70177 -10.60490 -10.44509 -10.21942 -10.02455 -9.76388 -8.86092 -8.32871 -8.14559 -7.66960 -7.45042 -6.36171 -3.95740 1.68746 1.97888 3.13416 3.21373 3.23741 3.73094 3.91379 4.11240 4.47759 4.79044 5.08415 5.17182 5.33884 5.36934 5.44066 5.65020 5.68699 5.90136 6.01564 6.23606 6.31181 6.42123 6.47765 6.58303 6.70895 6.86020 6.88566 6.98835 7.03473 7.09720 7.13349 7.35814 7.43233 7.54109 7.70524 7.90109 7.96964 8.48148 9.10676 9.62549 10.03801 10.67251 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.017857 B = 0.009071 C = 0.006650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.593066 B = 3086.006890 C = 4209.776815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.292 6.292 3 C 0.157 3.843 4 C -0.230 4.230 5 C -0.079 4.079 6 C -0.178 4.178 7 C -0.033 4.033 8 C -0.125 4.125 9 C 0.514 3.486 10 O -0.584 6.584 11 N -0.430 5.430 12 C -0.342 4.342 13 H 0.095 0.905 14 C 0.042 3.958 15 N -0.855 5.855 16 Si 0.910 3.090 17 H -0.271 1.271 18 H -0.284 1.284 19 H -0.274 1.274 20 C 0.164 3.836 21 C -0.147 4.147 22 C -0.170 4.170 23 H 0.049 0.951 24 H 0.094 0.906 25 H 0.050 0.950 26 H 0.122 0.878 27 H 0.116 0.884 28 H 0.120 0.880 29 H 0.158 0.842 30 H 0.269 0.731 31 H 0.090 0.910 32 H 0.054 0.946 33 H 0.032 0.968 34 H 0.072 0.928 35 H 0.041 0.959 36 H 0.044 0.956 37 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.438 3.397 -0.588 9.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.203 6.203 3 C 0.110 3.890 4 C -0.249 4.249 5 C -0.098 4.098 6 C -0.197 4.197 7 C -0.052 4.052 8 C -0.129 4.129 9 C 0.303 3.697 10 O -0.469 6.469 11 N -0.148 5.148 12 C -0.470 4.470 13 H 0.112 0.888 14 C -0.164 4.164 15 N -0.491 5.491 16 Si 0.737 3.263 17 H -0.196 1.196 18 H -0.209 1.209 19 H -0.199 1.199 20 C 0.061 3.939 21 C -0.205 4.205 22 C -0.228 4.228 23 H 0.068 0.932 24 H 0.113 0.887 25 H 0.069 0.931 26 H 0.140 0.860 27 H 0.134 0.866 28 H 0.138 0.862 29 H 0.175 0.825 30 H 0.080 0.920 31 H 0.108 0.892 32 H 0.073 0.927 33 H 0.051 0.949 34 H 0.091 0.909 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.252 2.667 -0.248 8.675 hybrid contribution 0.154 0.902 -0.847 1.247 sum -8.097 3.569 -1.095 8.917 Atomic orbital electron populations 1.22999 0.79842 1.03393 1.00602 1.86269 1.19870 1.26434 1.87768 1.19093 0.91335 0.84141 0.94434 1.20999 0.99298 0.92368 1.12246 1.20890 0.94765 0.96374 0.97745 1.21010 0.93596 0.98543 1.06505 1.21854 1.02108 0.89910 0.91280 1.19556 0.90061 0.95766 1.07504 1.17849 0.83663 0.86583 0.81607 1.90580 1.73568 1.38989 1.43768 1.43463 1.22170 1.09028 1.40180 1.19576 0.91362 1.02163 1.33938 0.88772 1.25310 0.96034 0.97890 0.97170 1.69981 1.02389 1.41317 1.35441 0.86263 0.77704 0.80747 0.81610 1.19623 1.20923 1.19917 1.20631 0.93297 0.82292 0.97701 1.21978 1.00196 1.00282 0.98009 1.22264 1.01404 0.98074 1.01042 0.93240 0.88714 0.93135 0.86039 0.86594 0.86242 0.82462 0.92033 0.89179 0.92743 0.94918 0.90898 0.94029 0.93658 0.90815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.81 101.05 0.99 1.36 16 2 O -0.29 -5.81 9.29 -34.13 -0.32 -6.12 16 3 C 0.16 3.17 6.67 -38.68 -0.26 2.91 16 4 C -0.23 -3.75 9.03 -39.47 -0.36 -4.11 16 5 C -0.08 -1.21 10.03 -39.52 -0.40 -1.60 16 6 C -0.18 -3.00 10.02 -39.63 -0.40 -3.39 16 7 C -0.03 -0.67 7.61 -39.18 -0.30 -0.97 16 8 C -0.13 -2.83 5.34 -104.85 -0.56 -3.39 16 9 C 0.51 13.17 6.52 -12.51 -0.08 13.08 16 10 O -0.58 -15.93 12.48 -10.22 -0.13 -16.06 16 11 N -0.43 -10.98 2.50 -108.93 -0.27 -11.25 16 12 C -0.34 -8.57 6.79 -15.00 -0.10 -8.67 16 13 H 0.09 2.30 5.88 -52.48 -0.31 1.99 16 14 C 0.04 1.04 4.82 -17.46 -0.08 0.95 16 15 N -0.86 -21.77 10.29 55.50 0.57 -21.20 16 16 Si 0.91 19.09 29.59 -169.99 -5.03 14.06 16 17 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 18 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 19 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 20 C 0.16 4.01 2.28 -67.93 -0.15 3.85 16 21 C -0.15 -3.48 8.87 37.16 0.33 -3.15 16 22 C -0.17 -3.75 9.04 37.16 0.34 -3.42 16 23 H 0.05 0.57 7.66 -51.93 -0.40 0.17 16 24 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 25 H 0.05 0.59 7.66 -51.93 -0.40 0.19 16 26 H 0.12 1.60 6.30 -52.49 -0.33 1.27 16 27 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 28 H 0.12 1.69 8.06 -52.48 -0.42 1.27 16 29 H 0.16 3.42 6.08 -52.48 -0.32 3.10 16 30 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 31 H 0.09 2.30 6.26 -51.93 -0.33 1.97 16 32 H 0.05 1.35 6.43 -51.93 -0.33 1.01 16 33 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 1.86 7.05 -51.93 -0.37 1.49 16 35 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.07 1.75 6.08 -51.93 -0.32 1.44 16 LS Contribution 298.70 15.07 4.50 4.50 Total: -1.00 -29.37 298.70 -6.47 -35.84 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -4.77 Total: 6.79 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: -1.03 Total: -6.56 kcal Atomic # 7 Polarization: -32.75 SS G_CDS: 0.30 Total: -32.45 kcal Atomic # 8 Polarization: -21.74 SS G_CDS: -0.44 Total: -22.19 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.03 Total: 14.06 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.37 -6.47 -35.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057520301.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.456 kcal (2) G-P(sol) polarization free energy of solvation -29.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds