Wall clock time and date at job start Mon Mar 30 2020 06:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35652 * 117.00252 * 2 1 4 4 C 1.38684 * 120.14951 * 359.97438 * 3 2 1 5 5 C 1.38086 * 120.08720 * 180.02562 * 4 3 2 6 6 C 1.38558 * 120.39981 * 359.95645 * 5 4 3 7 7 C 1.37770 * 120.30749 * 0.02562 * 6 5 4 8 8 C 1.39761 * 119.90119 * 359.97438 * 7 6 5 9 9 C 1.47430 * 120.19780 * 179.97438 * 8 7 6 10 10 O 1.21626 * 120.00416 * 139.37783 * 9 8 7 11 11 N 1.34782 * 119.99739 * 319.37953 * 9 8 7 12 12 C 1.36902 * 120.00305 * 6.27039 * 11 9 8 13 13 H 1.08006 * 119.99667 * 327.14791 * 12 11 9 14 14 C 1.39022 * 120.00238 * 147.14493 * 12 11 9 15 15 N 1.31378 * 119.99720 * 342.15119 * 14 12 11 16 16 Si 1.86801 * 120.00021 * 162.14936 * 14 12 11 17 17 H 1.48508 * 109.47032 * 60.00126 * 16 14 12 18 18 H 1.48497 * 109.46987 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47235 * 300.00102 * 16 14 12 20 20 C 1.46503 * 119.99873 * 186.27199 * 11 9 8 21 21 C 1.52997 * 109.47085 * 295.60494 * 20 11 9 22 22 C 1.53002 * 109.46813 * 55.60527 * 20 11 9 23 23 H 1.08998 * 109.46931 * 59.99932 * 1 2 3 24 24 H 1.09002 * 109.47321 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46759 * 300.00308 * 1 2 3 26 26 H 1.08002 * 119.95908 * 359.97438 * 4 3 2 27 27 H 1.07997 * 119.79408 * 179.97438 * 5 4 3 28 28 H 1.08003 * 119.84664 * 180.02562 * 6 5 4 29 29 H 1.08004 * 120.04737 * 179.71967 * 7 6 5 30 30 H 0.97002 * 119.99714 * 179.97438 * 15 14 12 31 31 H 1.08998 * 109.46818 * 175.60035 * 20 11 9 32 32 H 1.09002 * 109.47333 * 65.13732 * 21 20 11 33 33 H 1.09000 * 109.47268 * 185.13480 * 21 20 11 34 34 H 1.08993 * 109.47258 * 305.13358 * 21 20 11 35 35 H 1.08991 * 109.47563 * 59.51215 * 22 20 11 36 36 H 1.09006 * 109.46681 * 179.51223 * 22 20 11 37 37 H 1.09000 * 109.47220 * 299.50491 * 22 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2086 0.0000 4 6 1.2927 2.3737 -0.0005 5 6 1.9210 3.6034 -0.0011 6 6 3.3042 3.6840 -0.0002 7 6 4.0675 2.5370 0.0007 8 6 3.4448 1.2858 0.0013 9 6 4.2552 0.0542 0.0017 10 8 3.9218 -0.8930 0.6879 11 7 5.3657 -0.0220 -0.7583 12 6 5.8127 1.0840 -1.4301 13 1 5.1064 1.8090 -1.8068 14 6 7.1757 1.2738 -1.6273 15 7 8.0436 0.6137 -0.8945 16 14 7.7731 2.4675 -2.9342 17 1 7.2612 3.8285 -2.6326 18 1 9.2578 2.4885 -2.9438 19 1 7.2749 2.0348 -4.2646 20 6 6.0945 -1.2884 -0.8656 21 6 6.6600 -1.6689 0.5041 22 6 5.1426 -2.3852 -1.3471 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 0.2141 2.3193 -0.0014 27 1 1.3306 4.5077 -0.0019 28 1 3.7863 4.6505 -0.0002 29 1 5.1454 2.6048 -0.0031 30 1 8.9947 0.7459 -1.0323 31 1 6.9117 -1.1780 -1.5783 32 1 5.8395 -1.8683 1.1934 33 1 7.2779 -2.5616 0.4068 34 1 7.2657 -0.8480 0.8880 35 1 4.7330 -2.1101 -2.3189 36 1 5.6868 -3.3256 -1.4352 37 1 4.3300 -2.5016 -0.6300 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057520301.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:16 Heat of formation + Delta-G solvation = -51.051368 kcal Electronic energy + Delta-G solvation = -20764.886056 eV Core-core repulsion = 17700.591580 eV Total energy + Delta-G solvation = -3064.294476 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.39755 -40.05213 -38.09270 -36.81038 -34.20655 -33.13218 -31.27519 -30.92646 -28.05630 -27.84557 -26.79935 -24.63752 -23.09431 -22.30775 -20.69214 -19.65380 -18.37585 -17.42684 -17.03379 -16.59539 -16.37803 -16.11064 -15.83005 -15.32504 -15.16210 -14.58387 -14.48028 -14.16458 -14.02999 -13.60378 -13.35998 -12.98585 -12.86445 -12.83952 -12.72098 -12.38513 -12.31237 -12.07820 -11.93322 -11.90341 -11.88234 -11.63530 -10.74521 -10.10071 -9.73149 -9.41542 -9.03857 -8.23738 -5.89692 0.25670 0.59645 1.46382 1.50554 1.58218 2.20439 2.35532 2.49892 2.90125 3.01163 3.28681 3.98644 4.08754 4.24116 4.34563 4.39228 4.41858 4.52577 4.55656 4.60689 4.71245 4.76249 4.84891 4.88451 5.02958 5.11133 5.17151 5.20584 5.41204 5.48505 5.55132 5.59006 5.70078 5.73144 6.00349 6.06963 6.54996 6.61695 7.19558 7.71567 8.13302 8.80237 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.017857 B = 0.009071 C = 0.006650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.593066 B = 3086.006890 C = 4209.776815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.331 6.331 3 C 0.143 3.857 4 C -0.221 4.221 5 C -0.060 4.060 6 C -0.176 4.176 7 C -0.048 4.048 8 C -0.173 4.173 9 C 0.502 3.498 10 O -0.615 6.615 11 N -0.442 5.442 12 C -0.354 4.354 13 H 0.096 0.904 14 C 0.004 3.996 15 N -0.883 5.883 16 Si 0.976 3.024 17 H -0.259 1.259 18 H -0.284 1.284 19 H -0.274 1.274 20 C 0.158 3.842 21 C -0.131 4.131 22 C -0.157 4.157 23 H 0.070 0.930 24 H 0.108 0.892 25 H 0.069 0.931 26 H 0.160 0.840 27 H 0.166 0.834 28 H 0.149 0.851 29 H 0.132 0.868 30 H 0.270 0.730 31 H 0.077 0.923 32 H 0.037 0.963 33 H 0.056 0.944 34 H 0.048 0.952 35 H 0.040 0.960 36 H 0.073 0.927 37 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.266 5.521 -1.465 11.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.244 6.244 3 C 0.096 3.904 4 C -0.240 4.240 5 C -0.078 4.078 6 C -0.194 4.194 7 C -0.066 4.066 8 C -0.177 4.177 9 C 0.293 3.707 10 O -0.503 6.503 11 N -0.160 5.160 12 C -0.481 4.481 13 H 0.114 0.886 14 C -0.199 4.199 15 N -0.520 5.520 16 Si 0.800 3.200 17 H -0.184 1.184 18 H -0.209 1.209 19 H -0.199 1.199 20 C 0.055 3.945 21 C -0.189 4.189 22 C -0.215 4.215 23 H 0.089 0.911 24 H 0.126 0.874 25 H 0.087 0.913 26 H 0.177 0.823 27 H 0.184 0.816 28 H 0.167 0.833 29 H 0.150 0.850 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.056 0.944 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.092 0.908 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.094 4.802 -1.128 11.235 hybrid contribution 0.612 0.249 -0.519 0.840 sum -9.482 5.051 -1.647 10.868 Atomic orbital electron populations 1.23354 0.76755 1.05121 1.02459 1.86207 1.23236 1.27129 1.87842 1.19308 0.90783 0.85605 0.94705 1.21432 1.01004 0.91236 1.10292 1.21449 0.94273 0.97787 0.94285 1.21331 0.94551 0.98261 1.05231 1.21657 1.01249 0.90741 0.92988 1.19545 0.91459 0.95047 1.11627 1.18470 0.83812 0.87540 0.80926 1.90522 1.74346 1.40483 1.44954 1.43685 1.22450 1.09486 1.40356 1.19772 0.91835 1.02438 1.34098 0.88617 1.26073 0.95774 0.99456 0.98617 1.70093 1.02530 1.42771 1.36609 0.85249 0.76919 0.79144 0.78705 1.18355 1.20896 1.19911 1.20685 0.93447 0.82975 0.97435 1.21803 0.99386 1.00337 0.97412 1.22124 1.00529 0.98656 1.00153 0.91115 0.87351 0.91255 0.82265 0.81639 0.83330 0.85047 0.92028 0.90518 0.94359 0.92487 0.93247 0.94051 0.90766 0.92758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 9.81 113.37 1.11 1.54 16 2 O -0.33 -13.17 9.29 -74.88 -0.70 -13.87 16 3 C 0.14 5.68 6.67 22.85 0.15 5.83 16 4 C -0.22 -6.43 9.03 22.34 0.20 -6.22 16 5 C -0.06 -1.55 10.03 22.31 0.22 -1.33 16 6 C -0.18 -5.44 10.02 22.24 0.22 -5.22 16 7 C -0.05 -1.96 7.61 22.53 0.17 -1.79 16 8 C -0.17 -8.04 5.34 -20.01 -0.11 -8.15 16 9 C 0.50 26.95 6.52 86.66 0.56 27.52 16 10 O -0.62 -35.37 12.48 10.68 0.13 -35.24 16 11 N -0.44 -23.53 2.50 -616.79 -1.54 -25.08 16 12 C -0.35 -18.25 6.79 84.09 0.57 -17.68 16 13 H 0.10 4.80 5.88 -2.91 -0.02 4.79 16 14 C 0.00 0.22 4.82 84.95 0.41 0.63 16 15 N -0.88 -46.22 10.29 21.68 0.22 -46.00 16 16 Si 0.98 39.30 29.59 68.60 2.03 41.33 16 17 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 18 H -0.28 -11.31 7.11 99.48 0.71 -10.61 16 19 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 20 C 0.16 7.98 2.28 44.99 0.10 8.08 16 21 C -0.13 -6.48 8.87 71.98 0.64 -5.84 16 22 C -0.16 -7.07 9.04 71.98 0.65 -6.42 16 23 H 0.07 1.42 7.66 -2.39 -0.02 1.40 16 24 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 25 H 0.07 1.42 7.66 -2.39 -0.02 1.40 16 26 H 0.16 3.35 6.30 -2.91 -0.02 3.33 16 27 H 0.17 2.72 8.06 -2.91 -0.02 2.70 16 28 H 0.15 3.66 8.06 -2.91 -0.02 3.64 16 29 H 0.13 5.97 6.08 -2.91 -0.02 5.95 16 30 H 0.27 13.41 8.31 -92.71 -0.77 12.64 16 31 H 0.08 4.04 6.26 -2.39 -0.01 4.03 16 32 H 0.04 1.97 6.43 -2.39 -0.02 1.96 16 33 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 34 H 0.05 2.63 7.05 -2.39 -0.02 2.62 16 35 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.07 2.84 8.14 -2.38 -0.02 2.82 16 37 H 0.05 2.66 6.08 -2.39 -0.01 2.65 16 Total: -1.00 -67.65 298.70 6.13 -61.52 By element: Atomic # 1 Polarization: 25.31 SS G_CDS: 1.07 Total: 26.39 kcal Atomic # 6 Polarization: -13.96 SS G_CDS: 4.91 Total: -9.05 kcal Atomic # 7 Polarization: -69.76 SS G_CDS: -1.32 Total: -71.08 kcal Atomic # 8 Polarization: -48.54 SS G_CDS: -0.56 Total: -49.10 kcal Atomic # 14 Polarization: 39.30 SS G_CDS: 2.03 Total: 41.33 kcal Total: -67.65 6.13 -61.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057520301.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.466 kcal (2) G-P(sol) polarization free energy of solvation -67.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds