Wall clock time and date at job start Mon Mar 30 2020 06:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35715 * 116.99735 * 2 1 4 4 C 1.39011 * 119.90416 * 180.02562 * 3 2 1 5 5 C 1.37689 * 120.09336 * 180.25456 * 4 3 2 6 6 C 1.39790 * 119.90496 * 359.51835 * 5 4 3 7 7 C 1.47497 * 120.09627 * 180.23045 * 6 5 4 8 8 O 1.21616 * 120.00289 * 145.50666 * 7 6 5 9 9 N 1.34779 * 119.99862 * 325.50992 * 7 6 5 10 10 C 1.36903 * 120.00112 * 215.76556 * 9 7 6 11 11 H 1.08004 * 120.00050 * 323.20046 * 10 9 7 12 12 C 1.39017 * 120.00064 * 143.19958 * 10 9 7 13 13 N 1.31382 * 120.00090 * 357.36319 * 12 10 9 14 14 Si 1.86796 * 120.00173 * 177.37109 * 12 10 9 15 15 H 1.48497 * 109.47104 * 359.97438 * 14 12 10 16 16 H 1.48494 * 109.47401 * 119.99503 * 14 12 10 17 17 H 1.48505 * 109.47152 * 239.99832 * 14 12 10 18 18 C 1.46506 * 119.99973 * 35.76757 * 9 7 6 19 19 C 1.53004 * 109.46765 * 289.86413 * 18 9 7 20 20 C 1.53001 * 109.46998 * 49.86465 * 18 9 7 21 21 C 1.39795 * 119.81404 * 0.50115 * 6 5 4 22 22 C 1.37691 * 119.90575 * 359.72721 * 21 6 5 23 23 H 1.09000 * 109.47580 * 59.99714 * 1 2 3 24 24 H 1.08998 * 109.46967 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46915 * 299.99779 * 1 2 3 26 26 H 1.07998 * 119.95540 * 359.97438 * 4 3 2 27 27 H 1.08002 * 120.04776 * 179.74357 * 5 4 3 28 28 H 0.97000 * 120.00012 * 179.97438 * 13 12 10 29 29 H 1.09000 * 109.47009 * 169.86571 * 18 9 7 30 30 H 1.09001 * 109.47039 * 13.53357 * 19 18 9 31 31 H 1.09001 * 109.46839 * 133.52834 * 19 18 9 32 32 H 1.08994 * 109.46975 * 253.52721 * 19 18 9 33 33 H 1.08996 * 109.46667 * 101.16062 * 20 18 9 34 34 H 1.09004 * 109.46549 * 221.15228 * 20 18 9 35 35 H 1.08990 * 109.47355 * 341.15656 * 20 18 9 36 36 H 1.07999 * 120.04903 * 179.70703 * 21 6 5 37 37 H 1.07996 * 119.95435 * 179.97438 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2093 0.0000 4 6 3.4334 1.2798 -0.0005 5 6 4.0624 2.5045 0.0048 6 6 3.3030 3.6781 0.0005 7 6 3.9725 4.9924 0.0010 8 8 3.4772 5.9275 -0.5985 9 7 5.1334 5.1570 0.6658 10 6 5.3972 6.3415 1.2995 11 1 5.0793 7.2736 0.8563 12 6 6.0744 6.3444 2.5136 13 7 6.4154 5.2083 3.0783 14 14 6.4991 7.9637 3.3423 15 1 6.0086 9.0902 2.5082 16 1 5.8548 8.0198 4.6789 17 1 7.9723 8.0686 3.4980 18 6 6.1129 4.0684 0.7101 19 6 5.5755 2.9344 1.5855 20 6 6.3594 3.5462 -0.7067 21 6 1.9071 3.6027 0.0015 22 6 1.2860 2.3738 0.0009 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 4.0194 0.3726 -0.0005 27 1 5.1411 2.5584 0.0085 28 1 6.8882 5.2103 3.9253 29 1 7.0486 4.4386 1.1289 30 1 4.5127 3.0904 1.7704 31 1 5.7195 1.9821 1.0751 32 1 6.1116 2.9227 2.5344 33 1 7.2945 3.9567 -1.0876 34 1 6.4216 2.4581 -0.6871 35 1 5.5379 3.8516 -1.3546 36 1 1.3166 4.5070 0.0030 37 1 0.2076 2.3147 0.0021 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057520308.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:21 Heat of formation + Delta-G solvation = 41.671314 kcal Electronic energy + Delta-G solvation = -20647.149693 eV Core-core repulsion = 17586.875974 eV Total energy + Delta-G solvation = -3060.273719 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.51455 -39.09153 -36.53244 -35.90650 -33.00773 -30.97491 -30.24313 -29.42769 -27.27989 -26.36582 -25.01997 -22.73628 -22.10529 -21.06863 -18.91660 -17.89989 -17.04756 -15.98859 -15.66761 -15.61390 -15.03671 -14.88397 -14.31975 -13.99919 -13.54420 -13.34997 -12.93776 -12.80683 -12.49595 -12.20623 -11.93111 -11.81081 -11.48386 -11.24751 -11.10389 -11.04272 -10.66078 -10.54437 -10.33505 -10.27736 -10.06493 -9.44185 -8.89414 -8.64497 -8.29790 -7.68510 -7.41136 -6.28932 -3.91605 1.60690 1.83932 3.17812 3.26697 3.32597 3.43165 3.65388 4.13064 4.44091 4.81757 5.00136 5.02169 5.15136 5.19163 5.29833 5.43776 5.61893 5.63884 5.70486 5.82070 5.91898 5.98702 6.24325 6.33069 6.42504 6.44908 6.57115 6.64667 6.78113 6.80648 7.02668 7.09892 7.27127 7.42206 7.60814 7.65263 8.24671 8.58993 9.13602 9.40764 9.90286 10.76348 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.029543 B = 0.005970 C = 0.005751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.536321 B = 4688.923787 C = 4867.665078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.321 6.321 3 C 0.130 3.870 4 C -0.181 4.181 5 C -0.092 4.092 6 C -0.159 4.159 7 C 0.531 3.469 8 O -0.568 6.568 9 N -0.461 5.461 10 C -0.304 4.304 11 H 0.091 0.909 12 C 0.033 3.967 13 N -0.879 5.879 14 Si 0.923 3.077 15 H -0.269 1.269 16 H -0.282 1.282 17 H -0.282 1.282 18 C 0.150 3.850 19 C -0.158 4.158 20 C -0.185 4.185 21 C -0.035 4.035 22 C -0.231 4.231 23 H 0.053 0.947 24 H 0.095 0.905 25 H 0.054 0.946 26 H 0.126 0.874 27 H 0.205 0.795 28 H 0.266 0.734 29 H 0.110 0.890 30 H 0.067 0.933 31 H 0.042 0.958 32 H 0.072 0.928 33 H 0.057 0.943 34 H 0.064 0.936 35 H 0.060 0.940 36 H 0.126 0.874 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.633 -9.962 -3.101 11.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.235 6.235 3 C 0.085 3.915 4 C -0.199 4.199 5 C -0.109 4.109 6 C -0.163 4.163 7 C 0.321 3.679 8 O -0.450 6.450 9 N -0.182 5.182 10 C -0.431 4.431 11 H 0.109 0.891 12 C -0.170 4.170 13 N -0.518 5.518 14 Si 0.751 3.249 15 H -0.193 1.193 16 H -0.208 1.208 17 H -0.208 1.208 18 C 0.046 3.954 19 C -0.215 4.215 20 C -0.243 4.243 21 C -0.055 4.055 22 C -0.250 4.250 23 H 0.072 0.928 24 H 0.113 0.887 25 H 0.072 0.928 26 H 0.144 0.856 27 H 0.220 0.780 28 H 0.076 0.924 29 H 0.128 0.872 30 H 0.086 0.914 31 H 0.060 0.940 32 H 0.091 0.909 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.144 0.856 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -4.678 -9.694 -3.221 11.235 hybrid contribution -0.192 0.719 0.714 1.031 sum -4.870 -8.975 -2.507 10.514 Atomic orbital electron populations 1.22990 0.79005 1.03329 1.01355 1.85987 1.20962 1.27640 1.88867 1.19220 0.92449 0.83633 0.96191 1.20284 0.90937 0.98507 1.10220 1.23978 1.05448 0.90617 0.90812 1.20468 0.94024 0.95044 1.06731 1.18088 0.81155 0.86577 0.82096 1.90589 1.67605 1.44186 1.42654 1.43198 1.12717 1.13742 1.48561 1.19541 1.37243 0.85468 1.00897 0.89134 1.25417 0.97587 0.98183 0.95780 1.69866 1.39283 1.24817 1.17827 0.85903 0.77929 0.82018 0.79100 1.19349 1.20798 1.20777 1.20938 0.95206 0.87827 0.91475 1.22966 1.02373 0.95025 1.01096 1.22923 1.02395 0.99943 0.99024 1.20916 0.93531 0.96914 0.94117 1.20976 0.99404 0.92205 1.12368 0.92819 0.88703 0.92776 0.85613 0.77990 0.92380 0.87233 0.91434 0.93958 0.90925 0.92387 0.91736 0.92107 0.85626 0.85911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.81 101.05 0.99 1.28 16 2 O -0.32 -4.63 10.48 -18.85 -0.20 -4.83 16 3 C 0.13 2.14 6.70 -39.01 -0.26 1.88 16 4 C -0.18 -3.03 9.87 -39.50 -0.39 -3.42 16 5 C -0.09 -1.71 4.58 -39.20 -0.18 -1.88 16 6 C -0.16 -3.40 4.78 -104.96 -0.50 -3.90 16 7 C 0.53 13.44 5.55 -12.49 -0.07 13.37 16 8 O -0.57 -15.98 16.99 5.26 0.09 -15.90 16 9 N -0.46 -11.73 2.45 -108.90 -0.27 -12.00 16 10 C -0.30 -8.32 9.21 -15.00 -0.14 -8.46 16 11 H 0.09 2.61 7.63 -52.48 -0.40 2.20 16 12 C 0.03 0.86 5.17 -17.46 -0.09 0.77 16 13 N -0.88 -22.45 9.47 55.50 0.53 -21.92 16 14 Si 0.92 20.47 29.55 -169.99 -5.02 15.44 16 15 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 16 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 17 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 18 C 0.15 3.26 2.28 -67.92 -0.15 3.10 16 19 C -0.16 -3.16 7.18 37.16 0.27 -2.90 16 20 C -0.19 -3.32 8.29 37.16 0.31 -3.01 16 21 C -0.04 -0.69 9.60 -39.20 -0.38 -1.06 16 22 C -0.23 -3.79 9.01 -39.49 -0.36 -4.14 16 23 H 0.05 0.49 7.65 -51.93 -0.40 0.10 16 24 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.05 0.51 7.65 -51.93 -0.40 0.11 16 26 H 0.13 1.81 8.06 -52.49 -0.42 1.39 16 27 H 0.20 3.60 0.38 -95.45 -0.04 3.56 16 28 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 29 H 0.11 2.58 6.42 -51.93 -0.33 2.24 16 30 H 0.07 1.50 5.10 -51.93 -0.26 1.23 16 31 H 0.04 0.70 5.51 -51.93 -0.29 0.42 16 32 H 0.07 1.54 7.07 -51.93 -0.37 1.18 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.06 0.95 6.37 -51.93 -0.33 0.62 16 35 H 0.06 1.18 5.87 -51.93 -0.30 0.87 16 36 H 0.13 2.40 7.99 -52.49 -0.42 1.98 16 37 H 0.12 1.64 6.28 -52.49 -0.33 1.31 16 LS Contribution 288.87 15.07 4.35 4.35 Total: -1.00 -30.51 288.87 -5.74 -36.25 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -4.27 Total: 6.97 kcal Atomic # 6 Polarization: -7.43 SS G_CDS: -0.95 Total: -8.38 kcal Atomic # 7 Polarization: -34.18 SS G_CDS: 0.26 Total: -33.92 kcal Atomic # 8 Polarization: -20.61 SS G_CDS: -0.11 Total: -20.72 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -30.51 -5.74 -36.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057520308.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.924 kcal (2) G-P(sol) polarization free energy of solvation -30.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds