Wall clock time and date at job start Mon Mar 30 2020 06:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35715 * 116.99735 * 2 1 4 4 C 1.39011 * 119.90416 * 180.02562 * 3 2 1 5 5 C 1.37689 * 120.09336 * 180.25456 * 4 3 2 6 6 C 1.39790 * 119.90496 * 359.51835 * 5 4 3 7 7 C 1.47497 * 120.09627 * 180.23045 * 6 5 4 8 8 O 1.21616 * 120.00289 * 145.50666 * 7 6 5 9 9 N 1.34779 * 119.99862 * 325.50992 * 7 6 5 10 10 C 1.36903 * 120.00112 * 215.76556 * 9 7 6 11 11 H 1.08004 * 120.00050 * 323.20046 * 10 9 7 12 12 C 1.39017 * 120.00064 * 143.19958 * 10 9 7 13 13 N 1.31382 * 120.00090 * 357.36319 * 12 10 9 14 14 Si 1.86796 * 120.00173 * 177.37109 * 12 10 9 15 15 H 1.48497 * 109.47104 * 359.97438 * 14 12 10 16 16 H 1.48494 * 109.47401 * 119.99503 * 14 12 10 17 17 H 1.48505 * 109.47152 * 239.99832 * 14 12 10 18 18 C 1.46506 * 119.99973 * 35.76757 * 9 7 6 19 19 C 1.53004 * 109.46765 * 289.86413 * 18 9 7 20 20 C 1.53001 * 109.46998 * 49.86465 * 18 9 7 21 21 C 1.39795 * 119.81404 * 0.50115 * 6 5 4 22 22 C 1.37691 * 119.90575 * 359.72721 * 21 6 5 23 23 H 1.09000 * 109.47580 * 59.99714 * 1 2 3 24 24 H 1.08998 * 109.46967 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46915 * 299.99779 * 1 2 3 26 26 H 1.07998 * 119.95540 * 359.97438 * 4 3 2 27 27 H 1.08002 * 120.04776 * 179.74357 * 5 4 3 28 28 H 0.97000 * 120.00012 * 179.97438 * 13 12 10 29 29 H 1.09000 * 109.47009 * 169.86571 * 18 9 7 30 30 H 1.09001 * 109.47039 * 13.53357 * 19 18 9 31 31 H 1.09001 * 109.46839 * 133.52834 * 19 18 9 32 32 H 1.08994 * 109.46975 * 253.52721 * 19 18 9 33 33 H 1.08996 * 109.46667 * 101.16062 * 20 18 9 34 34 H 1.09004 * 109.46549 * 221.15228 * 20 18 9 35 35 H 1.08990 * 109.47355 * 341.15656 * 20 18 9 36 36 H 1.07999 * 120.04903 * 179.70703 * 21 6 5 37 37 H 1.07996 * 119.95435 * 179.97438 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2093 0.0000 4 6 3.4334 1.2798 -0.0005 5 6 4.0624 2.5045 0.0048 6 6 3.3030 3.6781 0.0005 7 6 3.9725 4.9924 0.0010 8 8 3.4772 5.9275 -0.5985 9 7 5.1334 5.1570 0.6658 10 6 5.3972 6.3415 1.2995 11 1 5.0793 7.2736 0.8563 12 6 6.0744 6.3444 2.5136 13 7 6.4154 5.2083 3.0783 14 14 6.4991 7.9637 3.3423 15 1 6.0086 9.0902 2.5082 16 1 5.8548 8.0198 4.6789 17 1 7.9723 8.0686 3.4980 18 6 6.1129 4.0684 0.7101 19 6 5.5755 2.9344 1.5855 20 6 6.3594 3.5462 -0.7067 21 6 1.9071 3.6027 0.0015 22 6 1.2860 2.3738 0.0009 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 4.0194 0.3726 -0.0005 27 1 5.1411 2.5584 0.0085 28 1 6.8882 5.2103 3.9253 29 1 7.0486 4.4386 1.1289 30 1 4.5127 3.0904 1.7704 31 1 5.7195 1.9821 1.0751 32 1 6.1116 2.9227 2.5344 33 1 7.2945 3.9567 -1.0876 34 1 6.4216 2.4581 -0.6871 35 1 5.5379 3.8516 -1.3546 36 1 1.3166 4.5070 0.0030 37 1 0.2076 2.3147 0.0021 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057520308.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:21 Heat of formation + Delta-G solvation = 22.599115 kcal Electronic energy + Delta-G solvation = -20647.976725 eV Core-core repulsion = 17586.875974 eV Total energy + Delta-G solvation = -3061.100751 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.07386 -40.43608 -38.15905 -37.59238 -34.83069 -32.77533 -31.70060 -30.89771 -28.32419 -27.85776 -26.90082 -24.30006 -23.56279 -22.64637 -20.64673 -19.17000 -18.80678 -17.71063 -17.07367 -16.78237 -16.62404 -16.37850 -16.15384 -15.72664 -15.07798 -14.78895 -14.42545 -14.34204 -13.86540 -13.69958 -13.35945 -13.30201 -13.02537 -12.95072 -12.86741 -12.40248 -12.37148 -12.08887 -11.95774 -11.84746 -11.60096 -11.02102 -10.74603 -10.57958 -9.69466 -9.38547 -9.05064 -8.26810 -5.97657 0.14459 0.46706 1.39647 1.42289 1.54467 1.91699 2.31333 2.37836 2.87655 2.99891 3.07825 3.85032 3.93054 4.00317 4.12007 4.27262 4.34005 4.42827 4.43146 4.51949 4.55866 4.74368 4.78583 4.83123 4.93481 4.97033 5.07460 5.24443 5.28116 5.35368 5.46055 5.50631 5.60828 5.73755 5.84638 6.22613 6.45180 6.65104 7.15632 7.47928 7.94947 8.76288 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.029543 B = 0.005970 C = 0.005751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.536321 B = 4688.923787 C = 4867.665078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.325 6.325 3 C 0.142 3.858 4 C -0.181 4.181 5 C -0.087 4.087 6 C -0.192 4.192 7 C 0.521 3.479 8 O -0.618 6.618 9 N -0.473 5.473 10 C -0.345 4.345 11 H 0.059 0.941 12 C 0.006 3.994 13 N -0.883 5.883 14 Si 0.984 3.016 15 H -0.279 1.279 16 H -0.276 1.276 17 H -0.266 1.266 18 C 0.145 3.855 19 C -0.145 4.145 20 C -0.178 4.178 21 C -0.050 4.050 22 C -0.224 4.224 23 H 0.064 0.936 24 H 0.125 0.875 25 H 0.061 0.939 26 H 0.158 0.842 27 H 0.209 0.791 28 H 0.272 0.728 29 H 0.086 0.914 30 H 0.046 0.954 31 H 0.085 0.915 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.106 0.894 35 H 0.042 0.958 36 H 0.114 0.886 37 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.868 -12.880 -2.713 14.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.238 6.238 3 C 0.095 3.905 4 C -0.199 4.199 5 C -0.104 4.104 6 C -0.196 4.196 7 C 0.313 3.687 8 O -0.504 6.504 9 N -0.193 5.193 10 C -0.473 4.473 11 H 0.077 0.923 12 C -0.197 4.197 13 N -0.521 5.521 14 Si 0.809 3.191 15 H -0.204 1.204 16 H -0.202 1.202 17 H -0.191 1.191 18 C 0.041 3.959 19 C -0.202 4.202 20 C -0.235 4.235 21 C -0.069 4.069 22 C -0.242 4.242 23 H 0.082 0.918 24 H 0.143 0.857 25 H 0.080 0.920 26 H 0.175 0.825 27 H 0.225 0.775 28 H 0.082 0.918 29 H 0.105 0.895 30 H 0.065 0.935 31 H 0.103 0.897 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.124 0.876 35 H 0.061 0.939 36 H 0.132 0.868 37 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -4.899 -12.665 -2.821 13.870 hybrid contribution -0.231 1.501 0.586 1.627 sum -5.131 -11.164 -2.235 12.489 Atomic orbital electron populations 1.23387 0.76509 1.05762 1.02240 1.86003 1.23467 1.26188 1.88124 1.19353 0.92669 0.84344 0.94089 1.20590 0.91647 0.98635 1.09039 1.23931 1.05520 0.90329 0.90596 1.20226 0.94919 0.93864 1.10582 1.18729 0.80996 0.87907 0.81048 1.90525 1.68720 1.46331 1.44863 1.43390 1.13734 1.14067 1.48123 1.19455 1.39733 0.85630 1.02495 0.92273 1.26042 0.96702 1.01400 0.95521 1.69946 1.38432 1.25858 1.17846 0.85012 0.78320 0.78020 0.77767 1.20371 1.20168 1.19124 1.21076 0.93331 0.87418 0.94042 1.22841 1.00524 0.96315 1.00513 1.22838 1.02125 1.02492 0.96031 1.20973 0.92918 0.98039 0.94974 1.21205 1.01068 0.90945 1.11003 0.91755 0.85692 0.92013 0.82481 0.77521 0.91813 0.89537 0.93519 0.89683 0.92450 0.91357 0.87571 0.93856 0.86761 0.82753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.35 16 2 O -0.32 -7.96 10.48 -90.37 -0.95 -8.91 16 3 C 0.14 4.17 6.70 22.64 0.15 4.32 16 4 C -0.18 -5.43 9.87 22.33 0.22 -5.21 16 5 C -0.09 -3.10 4.58 22.52 0.10 -3.00 16 6 C -0.19 -8.38 4.78 -20.08 -0.10 -8.48 16 7 C 0.52 27.80 5.55 86.68 0.48 28.29 16 8 O -0.62 -37.30 16.99 -4.08 -0.07 -37.37 16 9 N -0.47 -25.13 2.45 -616.71 -1.51 -26.65 16 10 C -0.35 -19.97 9.21 84.09 0.77 -19.19 16 11 H 0.06 3.69 7.63 -2.91 -0.02 3.66 16 12 C 0.01 0.31 5.17 84.95 0.44 0.75 16 13 N -0.88 -45.49 9.47 21.68 0.21 -45.29 16 14 Si 0.98 42.78 29.55 68.60 2.03 44.80 16 15 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 16 H -0.28 -11.70 7.11 99.48 0.71 -11.00 16 17 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 18 C 0.15 6.35 2.28 44.99 0.10 6.45 16 19 C -0.15 -5.69 7.18 71.98 0.52 -5.17 16 20 C -0.18 -6.20 8.29 71.98 0.60 -5.60 16 21 C -0.05 -1.94 9.60 22.52 0.22 -1.72 16 22 C -0.22 -6.86 9.01 22.33 0.20 -6.66 16 23 H 0.06 0.91 7.65 -2.39 -0.02 0.89 16 24 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.06 0.91 7.65 -2.39 -0.02 0.89 16 26 H 0.16 3.72 8.06 -2.91 -0.02 3.70 16 27 H 0.21 6.94 0.38 -43.27 -0.02 6.93 16 28 H 0.27 13.13 8.31 -92.71 -0.77 12.36 16 29 H 0.09 4.14 6.42 -2.39 -0.02 4.13 16 30 H 0.05 2.05 5.10 -2.39 -0.01 2.04 16 31 H 0.09 2.55 5.51 -2.39 -0.01 2.54 16 32 H 0.06 2.39 7.07 -2.39 -0.02 2.38 16 33 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.11 2.77 6.37 -2.38 -0.02 2.76 16 35 H 0.04 1.68 5.87 -2.39 -0.01 1.66 16 36 H 0.11 4.59 7.99 -2.91 -0.02 4.57 16 37 H 0.15 3.63 6.28 -2.91 -0.02 3.62 16 Total: -1.00 -70.27 288.87 5.61 -64.67 By element: Atomic # 1 Polarization: 21.54 SS G_CDS: 1.08 Total: 22.62 kcal Atomic # 6 Polarization: -18.70 SS G_CDS: 4.82 Total: -13.88 kcal Atomic # 7 Polarization: -70.63 SS G_CDS: -1.31 Total: -71.93 kcal Atomic # 8 Polarization: -45.26 SS G_CDS: -1.02 Total: -46.28 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.80 kcal Total: -70.27 5.61 -64.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057520308.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.266 kcal (2) G-P(sol) polarization free energy of solvation -70.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds