Wall clock time and date at job start Mon Mar 30 2020 07:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.35896 * 117.00039 * 179.97438 * 3 2 1 5 5 C 1.38738 * 120.05353 * 359.72616 * 4 3 2 6 6 C 1.38148 * 119.94048 * 179.74738 * 5 4 3 7 7 C 1.38261 * 120.05800 * 0.50500 * 6 5 4 8 8 C 1.50703 * 119.94589 * 179.75166 * 7 6 5 9 9 N 1.46506 * 109.46429 * 270.01596 * 8 7 6 10 10 C 1.34774 * 119.99499 * 179.97438 * 9 8 7 11 11 O 1.21287 * 120.00374 * 0.02562 * 10 9 8 12 12 C 1.50699 * 120.00057 * 180.02562 * 10 9 8 13 13 C 1.50703 * 109.47366 * 180.02562 * 12 10 9 14 14 H 1.08002 * 119.99961 * 359.97438 * 13 12 10 15 15 C 1.37878 * 119.99759 * 179.97438 * 13 12 10 16 16 N 1.31511 * 120.00420 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99626 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47098 * 60.00198 * 17 15 13 19 19 H 1.48499 * 109.47208 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47286 * 300.00034 * 17 15 13 21 21 C 1.38262 * 120.11048 * 359.76434 * 7 6 5 22 22 C 1.38145 * 120.05942 * 359.97438 * 21 7 6 23 23 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 24 24 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 26 26 H 1.09000 * 109.47486 * 239.99938 * 2 1 3 27 27 H 1.09001 * 109.47362 * 119.99215 * 2 1 3 28 28 H 1.07995 * 120.02746 * 359.97438 * 5 4 3 29 29 H 1.08004 * 119.97067 * 180.22662 * 6 5 4 30 30 H 1.08992 * 109.47037 * 30.01395 * 8 7 6 31 31 H 1.08998 * 109.46989 * 150.02347 * 8 7 6 32 32 H 0.97001 * 120.00249 * 0.02562 * 9 8 7 33 33 H 1.09004 * 109.46958 * 300.00389 * 12 10 9 34 34 H 1.09002 * 109.47179 * 60.00018 * 12 10 9 35 35 H 0.96998 * 120.00444 * 179.97438 * 16 15 13 36 36 H 1.08008 * 119.97547 * 179.97438 * 21 7 6 37 37 H 1.08000 * 120.03441 * 179.97438 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3535 1.5255 0.0005 5 6 4.1997 0.4261 0.0068 6 6 5.5689 0.6099 0.0021 7 6 6.0961 1.8881 0.0016 8 6 7.5901 2.0856 0.0021 9 7 8.0736 2.1499 1.3836 10 6 9.3872 2.3232 1.6303 11 8 10.1690 2.4263 0.7088 12 6 9.8847 2.3887 3.0513 13 6 11.3787 2.5864 3.0519 14 1 11.9145 2.6570 2.1168 15 6 12.0616 2.6771 4.2463 16 7 11.4094 2.5906 5.3850 17 14 13.9136 2.9214 4.2469 18 1 14.2460 4.1879 3.5465 19 1 14.4038 2.9861 5.6472 20 1 14.5633 1.7838 3.5477 21 6 5.2549 2.9853 0.0010 22 6 3.8850 2.8070 0.0003 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5137 0.8900 28 1 3.7884 -0.5724 0.0117 29 1 6.2281 -0.2456 0.0032 30 1 8.0671 1.2509 -0.5113 31 1 7.8338 3.0155 -0.5117 32 1 7.4484 2.0671 2.1206 33 1 9.4079 3.2235 3.5651 34 1 9.6407 1.4588 3.5650 35 1 11.8898 2.6540 6.2252 36 1 5.6690 3.9828 0.0011 37 1 3.2282 3.6644 0.0003 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057520471.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:51 Heat of formation + Delta-G solvation = -65.491136 kcal Electronic energy + Delta-G solvation = -18476.767034 eV Core-core repulsion = 15411.846402 eV Total energy + Delta-G solvation = -3064.920631 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.38288 -38.76826 -37.72502 -34.16786 -32.88765 -32.22658 -31.09580 -30.35928 -28.71126 -25.62898 -24.28077 -23.21890 -22.22193 -21.11147 -19.61772 -18.50116 -16.44035 -16.40447 -16.30772 -16.17213 -15.14101 -14.93766 -14.66283 -14.35860 -14.09060 -13.69314 -13.63145 -13.52854 -12.93125 -12.64584 -12.35131 -12.17250 -12.03810 -11.95505 -11.45941 -11.11238 -11.01713 -10.91786 -10.77013 -10.55661 -9.93192 -9.25376 -9.14958 -8.77870 -8.45936 -8.36425 -8.19281 -6.02742 -4.02197 1.19013 1.22360 2.92004 3.39533 3.41381 3.46296 3.52212 3.76217 4.20797 4.52325 4.53307 4.54579 4.68799 4.75913 4.79182 4.87210 5.08871 5.24032 5.26560 5.35357 5.39612 5.51667 5.64047 5.69510 5.85672 5.94243 6.11646 6.18424 6.41423 6.56251 6.60333 7.07300 7.19489 7.23205 7.36860 7.98886 8.10243 8.48455 9.08451 9.27232 9.62700 11.09666 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.045058 B = 0.002971 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.278438 B = 9423.709750 C = 9668.932178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.054 3.946 3 O -0.318 6.318 4 C 0.129 3.871 5 C -0.211 4.211 6 C -0.061 4.061 7 C -0.135 4.135 8 C 0.164 3.836 9 N -0.745 5.745 10 C 0.514 3.486 11 O -0.547 6.547 12 C 0.005 3.995 13 C -0.508 4.508 14 H 0.074 0.926 15 C 0.054 3.946 16 N -0.902 5.902 17 Si 0.902 3.098 18 H -0.276 1.276 19 H -0.288 1.288 20 H -0.276 1.276 21 C -0.062 4.062 22 C -0.154 4.154 23 H 0.065 0.935 24 H 0.077 0.923 25 H 0.066 0.934 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.127 0.873 29 H 0.127 0.873 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.397 0.603 33 H 0.047 0.953 34 H 0.047 0.953 35 H 0.262 0.738 36 H 0.132 0.868 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.932 -4.856 -9.993 24.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.232 6.232 4 C 0.084 3.916 5 C -0.229 4.229 6 C -0.080 4.080 7 C -0.135 4.135 8 C 0.040 3.960 9 N -0.400 5.400 10 C 0.304 3.696 11 O -0.424 6.424 12 C -0.034 4.034 13 C -0.546 4.546 14 H 0.093 0.907 15 C -0.147 4.147 16 N -0.542 5.542 17 Si 0.730 3.270 18 H -0.201 1.201 19 H -0.214 1.214 20 H -0.201 1.201 21 C -0.080 4.080 22 C -0.173 4.173 23 H 0.085 0.915 24 H 0.096 0.904 25 H 0.085 0.915 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.145 0.855 29 H 0.145 0.855 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.230 0.770 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.150 0.850 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -21.460 -4.638 -10.481 24.329 hybrid contribution 0.614 -0.224 0.484 0.813 sum -20.846 -4.862 -9.998 23.625 Atomic orbital electron populations 1.21777 0.92758 1.02860 1.03530 1.22784 0.95846 0.82027 1.01492 1.86061 1.19199 1.29288 1.88662 1.19024 0.82120 0.94243 0.96196 1.21216 0.94260 0.97983 1.09481 1.20926 0.94211 0.96962 0.95891 1.19936 0.95650 0.93244 1.04717 1.19996 0.88229 1.02173 0.85606 1.46418 1.09355 1.77332 1.06900 1.22032 0.80086 0.73251 0.94231 1.90534 1.55183 1.49228 1.47415 1.19233 0.98122 0.99428 0.86594 1.21138 0.91075 1.49068 0.93347 0.90743 1.25013 0.98938 0.95329 0.95382 1.69949 1.36004 1.50911 0.97290 0.86480 0.84904 0.78960 0.76638 1.20121 1.21393 1.20142 1.20960 0.91937 0.99032 0.96079 1.20422 0.95163 0.94783 1.06901 0.91549 0.90372 0.91475 0.92038 0.91929 0.85533 0.85462 0.91464 0.91378 0.76998 0.93470 0.93504 0.92874 0.84987 0.85173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 10.28 37.16 0.38 -0.44 16 2 C 0.05 0.39 5.46 37.16 0.20 0.59 16 3 O -0.32 -3.34 10.14 -19.41 -0.20 -3.53 16 4 C 0.13 1.45 6.69 -39.21 -0.26 1.19 16 5 C -0.21 -2.21 9.04 -39.43 -0.36 -2.57 16 6 C -0.06 -0.70 9.69 -39.61 -0.38 -1.08 16 7 C -0.13 -1.67 5.25 -104.60 -0.55 -2.22 16 8 C 0.16 2.45 5.80 -5.19 -0.03 2.42 16 9 N -0.75 -13.05 5.55 -61.47 -0.34 -13.39 16 10 C 0.51 11.85 7.82 -10.99 -0.09 11.77 16 11 O -0.55 -14.45 15.46 5.55 0.09 -14.36 16 12 C 0.01 0.14 5.46 -29.03 -0.16 -0.02 16 13 C -0.51 -14.94 8.92 -34.44 -0.31 -15.24 16 14 H 0.07 2.28 6.75 -52.49 -0.35 1.92 16 15 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 16 N -0.90 -26.74 13.29 55.43 0.74 -26.00 16 17 Si 0.90 22.37 29.54 -169.99 -5.02 17.35 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 C -0.06 -0.70 9.69 -39.61 -0.38 -1.09 16 22 C -0.15 -1.70 9.99 -39.43 -0.39 -2.10 16 23 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 25 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.39 7.68 -51.93 -0.40 -0.01 16 27 H 0.06 0.41 7.65 -51.93 -0.40 0.02 16 28 H 0.13 1.05 6.30 -52.49 -0.33 0.72 16 29 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16 30 H 0.07 1.03 8.08 -51.93 -0.42 0.61 16 31 H 0.07 1.05 8.08 -51.93 -0.42 0.63 16 32 H 0.40 6.13 8.46 -40.82 -0.35 5.79 16 33 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 36 H 0.13 1.36 8.06 -52.48 -0.42 0.94 16 37 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 LS Contribution 321.04 15.07 4.84 4.84 Total: -1.00 -33.50 321.04 -7.51 -41.01 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -5.18 Total: 1.42 kcal Atomic # 6 Polarization: -4.90 SS G_CDS: -2.42 Total: -7.33 kcal Atomic # 7 Polarization: -39.79 SS G_CDS: 0.40 Total: -39.39 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: -0.11 Total: -17.90 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -33.50 -7.51 -41.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057520471.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.481 kcal (2) G-P(sol) polarization free energy of solvation -33.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds