Wall clock time and date at job start Mon Mar 30 2020 07:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.35896 * 117.00039 * 179.97438 * 3 2 1 5 5 C 1.38738 * 120.05353 * 359.72616 * 4 3 2 6 6 C 1.38148 * 119.94048 * 179.74738 * 5 4 3 7 7 C 1.38261 * 120.05800 * 0.50500 * 6 5 4 8 8 C 1.50703 * 119.94589 * 179.75166 * 7 6 5 9 9 N 1.46506 * 109.46429 * 270.01596 * 8 7 6 10 10 C 1.34774 * 119.99499 * 179.97438 * 9 8 7 11 11 O 1.21287 * 120.00374 * 0.02562 * 10 9 8 12 12 C 1.50699 * 120.00057 * 180.02562 * 10 9 8 13 13 C 1.50703 * 109.47366 * 180.02562 * 12 10 9 14 14 H 1.08002 * 119.99961 * 359.97438 * 13 12 10 15 15 C 1.37878 * 119.99759 * 179.97438 * 13 12 10 16 16 N 1.31511 * 120.00420 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99626 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47098 * 60.00198 * 17 15 13 19 19 H 1.48499 * 109.47208 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47286 * 300.00034 * 17 15 13 21 21 C 1.38262 * 120.11048 * 359.76434 * 7 6 5 22 22 C 1.38145 * 120.05942 * 359.97438 * 21 7 6 23 23 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 24 24 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 26 26 H 1.09000 * 109.47486 * 239.99938 * 2 1 3 27 27 H 1.09001 * 109.47362 * 119.99215 * 2 1 3 28 28 H 1.07995 * 120.02746 * 359.97438 * 5 4 3 29 29 H 1.08004 * 119.97067 * 180.22662 * 6 5 4 30 30 H 1.08992 * 109.47037 * 30.01395 * 8 7 6 31 31 H 1.08998 * 109.46989 * 150.02347 * 8 7 6 32 32 H 0.97001 * 120.00249 * 0.02562 * 9 8 7 33 33 H 1.09004 * 109.46958 * 300.00389 * 12 10 9 34 34 H 1.09002 * 109.47179 * 60.00018 * 12 10 9 35 35 H 0.96998 * 120.00444 * 179.97438 * 16 15 13 36 36 H 1.08008 * 119.97547 * 179.97438 * 21 7 6 37 37 H 1.08000 * 120.03441 * 179.97438 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3535 1.5255 0.0005 5 6 4.1997 0.4261 0.0068 6 6 5.5689 0.6099 0.0021 7 6 6.0961 1.8881 0.0016 8 6 7.5901 2.0856 0.0021 9 7 8.0736 2.1499 1.3836 10 6 9.3872 2.3232 1.6303 11 8 10.1690 2.4263 0.7088 12 6 9.8847 2.3887 3.0513 13 6 11.3787 2.5864 3.0519 14 1 11.9145 2.6570 2.1168 15 6 12.0616 2.6771 4.2463 16 7 11.4094 2.5906 5.3850 17 14 13.9136 2.9214 4.2469 18 1 14.2460 4.1879 3.5465 19 1 14.4038 2.9861 5.6472 20 1 14.5633 1.7838 3.5477 21 6 5.2549 2.9853 0.0010 22 6 3.8850 2.8070 0.0003 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5137 0.8900 28 1 3.7884 -0.5724 0.0117 29 1 6.2281 -0.2456 0.0032 30 1 8.0671 1.2509 -0.5113 31 1 7.8338 3.0155 -0.5117 32 1 7.4484 2.0671 2.1206 33 1 9.4079 3.2235 3.5651 34 1 9.6407 1.4588 3.5650 35 1 11.8898 2.6540 6.2252 36 1 5.6690 3.9828 0.0011 37 1 3.2282 3.6644 0.0003 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057520471.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:50 Heat of formation + Delta-G solvation = -87.202746 kcal Electronic energy + Delta-G solvation = -18477.708520 eV Core-core repulsion = 15411.846402 eV Total energy + Delta-G solvation = -3065.862117 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.23486 -40.37070 -38.74513 -35.61632 -35.07555 -32.95131 -31.97193 -31.62195 -30.46237 -26.98748 -25.23631 -24.83801 -23.02965 -22.01700 -21.36755 -19.26793 -18.52310 -17.91492 -17.08291 -17.05314 -16.83945 -16.45458 -16.08266 -15.80156 -15.27045 -14.62697 -14.49798 -14.45524 -14.22867 -14.12770 -13.73726 -13.34981 -13.05535 -12.96060 -12.77535 -12.60356 -12.52282 -12.43094 -12.01822 -11.70749 -11.65049 -11.45819 -10.61973 -10.58823 -10.02365 -9.95668 -9.15966 -8.24196 -6.31676 0.28946 0.36094 1.41031 1.44093 1.52720 1.90197 2.23966 2.34145 2.49289 2.93479 3.10991 3.72534 3.79165 3.92199 4.06664 4.11702 4.29933 4.35160 4.38037 4.42616 4.52481 4.72412 4.79643 4.89888 4.95108 5.06259 5.09426 5.19022 5.26026 5.27418 5.35220 5.55134 5.62961 5.74111 5.76760 6.06837 6.43259 6.71570 6.85116 7.34419 7.52052 8.87799 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.045058 B = 0.002971 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.278438 B = 9423.709750 C = 9668.932178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.043 3.957 3 O -0.331 6.331 4 C 0.126 3.874 5 C -0.210 4.210 6 C -0.064 4.064 7 C -0.147 4.147 8 C 0.167 3.833 9 N -0.722 5.722 10 C 0.519 3.481 11 O -0.585 6.585 12 C 0.008 3.992 13 C -0.537 4.537 14 H 0.056 0.944 15 C 0.009 3.991 16 N -0.926 5.926 17 Si 0.965 3.035 18 H -0.272 1.272 19 H -0.274 1.274 20 H -0.272 1.272 21 C -0.063 4.063 22 C -0.162 4.162 23 H 0.063 0.937 24 H 0.099 0.901 25 H 0.062 0.938 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.149 0.851 29 H 0.136 0.864 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.409 0.591 33 H 0.041 0.959 34 H 0.042 0.958 35 H 0.267 0.733 36 H 0.140 0.860 37 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.965 -5.467 -10.179 25.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.031 4.031 3 O -0.245 6.245 4 C 0.080 3.920 5 C -0.228 4.228 6 C -0.082 4.082 7 C -0.147 4.147 8 C 0.045 3.955 9 N -0.376 5.376 10 C 0.308 3.692 11 O -0.465 6.465 12 C -0.032 4.032 13 C -0.576 4.576 14 H 0.074 0.926 15 C -0.190 4.190 16 N -0.565 5.565 17 Si 0.790 3.210 18 H -0.197 1.197 19 H -0.199 1.199 20 H -0.197 1.197 21 C -0.081 4.081 22 C -0.181 4.181 23 H 0.082 0.918 24 H 0.117 0.883 25 H 0.081 0.919 26 H 0.090 0.910 27 H 0.088 0.912 28 H 0.167 0.833 29 H 0.154 0.846 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.244 0.756 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.076 0.924 36 H 0.158 0.842 37 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -22.560 -5.260 -10.661 25.500 hybrid contribution 0.770 -0.073 0.531 0.938 sum -21.790 -5.333 -10.130 24.615 Atomic orbital electron populations 1.21808 0.91507 1.04164 1.03197 1.23084 0.96914 0.80743 1.02357 1.86062 1.18697 1.31366 1.88401 1.19216 0.82726 0.94486 0.95524 1.21424 0.93728 0.98988 1.08703 1.21064 0.94898 0.96771 0.95496 1.19698 0.93850 0.94211 1.06960 1.20052 0.90120 1.01936 0.83439 1.46139 1.07584 1.74941 1.08894 1.21451 0.81632 0.73500 0.92612 1.90512 1.56682 1.51448 1.47897 1.19077 0.96739 0.98765 0.88580 1.21359 0.93036 1.50187 0.92977 0.92602 1.25813 1.03635 0.94656 0.94885 1.70026 1.37787 1.50940 0.97789 0.85496 0.79259 0.78947 0.77298 1.19717 1.19909 1.19709 1.21054 0.92156 0.99174 0.95725 1.20604 0.95137 0.95500 1.06830 0.91761 0.88251 0.91927 0.90964 0.91190 0.83323 0.84619 0.91720 0.91695 0.75574 0.94060 0.94046 0.92384 0.84241 0.83998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 10.28 71.98 0.74 -0.58 16 2 C 0.04 0.53 5.46 71.98 0.39 0.93 16 3 O -0.33 -6.34 10.14 -92.39 -0.94 -7.28 16 4 C 0.13 2.59 6.69 22.51 0.15 2.74 16 5 C -0.21 -3.95 9.04 22.37 0.20 -3.75 16 6 C -0.06 -1.34 9.69 22.25 0.22 -1.13 16 7 C -0.15 -3.46 5.25 -19.85 -0.10 -3.56 16 8 C 0.17 4.91 5.80 85.63 0.50 5.41 16 9 N -0.72 -25.02 5.55 -466.78 -2.59 -27.61 16 10 C 0.52 24.21 7.82 87.66 0.69 24.90 16 11 O -0.59 -31.48 15.46 -3.05 -0.05 -31.52 16 12 C 0.01 0.41 5.46 29.10 0.16 0.57 16 13 C -0.54 -32.15 8.92 25.60 0.23 -31.92 16 14 H 0.06 3.50 6.75 -2.91 -0.02 3.48 16 15 C 0.01 0.50 5.46 84.66 0.46 0.96 16 16 N -0.93 -54.83 13.29 21.45 0.28 -54.54 16 17 Si 0.97 45.76 29.54 68.60 2.03 47.79 16 18 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 19 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 20 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16 21 C -0.06 -1.36 9.69 22.25 0.22 -1.14 16 22 C -0.16 -3.35 9.99 22.37 0.22 -3.12 16 23 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 24 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 25 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.07 0.73 7.68 -2.39 -0.02 0.71 16 27 H 0.07 0.75 7.65 -2.39 -0.02 0.74 16 28 H 0.15 2.06 6.30 -2.91 -0.02 2.04 16 29 H 0.14 2.58 8.06 -2.91 -0.02 2.56 16 30 H 0.06 1.96 8.08 -2.39 -0.02 1.94 16 31 H 0.06 1.97 8.08 -2.39 -0.02 1.95 16 32 H 0.41 12.31 8.46 -92.71 -0.78 11.52 16 33 H 0.04 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.04 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 36 H 0.14 2.73 8.06 -2.91 -0.02 2.71 16 37 H 0.14 2.51 8.06 -2.91 -0.02 2.49 16 Total: -1.00 -71.26 321.04 3.09 -68.17 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: 0.28 Total: 14.69 kcal Atomic # 6 Polarization: -13.76 SS G_CDS: 4.07 Total: -9.69 kcal Atomic # 7 Polarization: -79.85 SS G_CDS: -2.30 Total: -82.15 kcal Atomic # 8 Polarization: -37.82 SS G_CDS: -0.98 Total: -38.80 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -71.26 3.09 -68.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057520471.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.030 kcal (2) G-P(sol) polarization free energy of solvation -71.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds