Wall clock time and date at job start Mon Mar 30 2020 07:03:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 O 1.42905 * 109.46728 * 2 1
4 4 C 1.35896 * 117.00039 * 179.97438 * 3 2 1
5 5 C 1.38738 * 120.05353 * 359.72616 * 4 3 2
6 6 C 1.38148 * 119.94048 * 179.74738 * 5 4 3
7 7 C 1.38261 * 120.05800 * 0.50500 * 6 5 4
8 8 C 1.50703 * 119.94589 * 179.75166 * 7 6 5
9 9 N 1.46506 * 109.46429 * 270.01596 * 8 7 6
10 10 C 1.34774 * 119.99499 * 179.97438 * 9 8 7
11 11 O 1.21287 * 120.00374 * 0.02562 * 10 9 8
12 12 C 1.50699 * 120.00057 * 180.02562 * 10 9 8
13 13 C 1.50703 * 109.47366 * 180.02562 * 12 10 9
14 14 H 1.08002 * 119.99961 * 359.97438 * 13 12 10
15 15 C 1.37878 * 119.99759 * 179.97438 * 13 12 10
16 16 N 1.31511 * 120.00420 * 0.02562 * 15 13 12
17 17 Si 1.86802 * 119.99626 * 179.97438 * 15 13 12
18 18 H 1.48501 * 109.47098 * 60.00198 * 17 15 13
19 19 H 1.48499 * 109.47208 * 180.02562 * 17 15 13
20 20 H 1.48503 * 109.47286 * 300.00034 * 17 15 13
21 21 C 1.38262 * 120.11048 * 359.76434 * 7 6 5
22 22 C 1.38145 * 120.05942 * 359.97438 * 21 7 6
23 23 H 1.09001 * 109.47362 * 60.00784 * 1 2 3
24 24 H 1.09002 * 109.46716 * 180.02562 * 1 2 3
25 25 H 1.09000 * 109.47486 * 300.00062 * 1 2 3
26 26 H 1.09000 * 109.47486 * 239.99938 * 2 1 3
27 27 H 1.09001 * 109.47362 * 119.99215 * 2 1 3
28 28 H 1.07995 * 120.02746 * 359.97438 * 5 4 3
29 29 H 1.08004 * 119.97067 * 180.22662 * 6 5 4
30 30 H 1.08992 * 109.47037 * 30.01395 * 8 7 6
31 31 H 1.08998 * 109.46989 * 150.02347 * 8 7 6
32 32 H 0.97001 * 120.00249 * 0.02562 * 9 8 7
33 33 H 1.09004 * 109.46958 * 300.00389 * 12 10 9
34 34 H 1.09002 * 109.47179 * 60.00018 * 12 10 9
35 35 H 0.96998 * 120.00444 * 179.97438 * 16 15 13
36 36 H 1.08008 * 119.97547 * 179.97438 * 21 7 6
37 37 H 1.08000 * 120.03441 * 179.97438 * 22 21 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0062 1.3474 0.0000
4 6 3.3535 1.5255 0.0005
5 6 4.1997 0.4261 0.0068
6 6 5.5689 0.6099 0.0021
7 6 6.0961 1.8881 0.0016
8 6 7.5901 2.0856 0.0021
9 7 8.0736 2.1499 1.3836
10 6 9.3872 2.3232 1.6303
11 8 10.1690 2.4263 0.7088
12 6 9.8847 2.3887 3.0513
13 6 11.3787 2.5864 3.0519
14 1 11.9145 2.6570 2.1168
15 6 12.0616 2.6771 4.2463
16 7 11.4094 2.5906 5.3850
17 14 13.9136 2.9214 4.2469
18 1 14.2460 4.1879 3.5465
19 1 14.4038 2.9861 5.6472
20 1 14.5633 1.7838 3.5477
21 6 5.2549 2.9853 0.0010
22 6 3.8850 2.8070 0.0003
23 1 -0.3634 0.5137 -0.8900
24 1 -0.3633 -1.0277 0.0005
25 1 -0.3634 0.5138 0.8900
26 1 1.8934 -0.5138 -0.8900
27 1 1.8934 -0.5137 0.8900
28 1 3.7884 -0.5724 0.0117
29 1 6.2281 -0.2456 0.0032
30 1 8.0671 1.2509 -0.5113
31 1 7.8338 3.0155 -0.5117
32 1 7.4484 2.0671 2.1206
33 1 9.4079 3.2235 3.5651
34 1 9.6407 1.4588 3.5650
35 1 11.8898 2.6540 6.2252
36 1 5.6690 3.9828 0.0011
37 1 3.2282 3.6644 0.0003
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000057520471.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 07:03:50
Heat of formation + Delta-G solvation = -87.202746 kcal
Electronic energy + Delta-G solvation = -18477.708520 eV
Core-core repulsion = 15411.846402 eV
Total energy + Delta-G solvation = -3065.862117 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 263.131 amu
Computer time = 0.39 seconds
Orbital eigenvalues (eV)
-41.23486 -40.37070 -38.74513 -35.61632 -35.07555 -32.95131 -31.97193 -31.62195
-30.46237 -26.98748 -25.23631 -24.83801 -23.02965 -22.01700 -21.36755 -19.26793
-18.52310 -17.91492 -17.08291 -17.05314 -16.83945 -16.45458 -16.08266 -15.80156
-15.27045 -14.62697 -14.49798 -14.45524 -14.22867 -14.12770 -13.73726 -13.34981
-13.05535 -12.96060 -12.77535 -12.60356 -12.52282 -12.43094 -12.01822 -11.70749
-11.65049 -11.45819 -10.61973 -10.58823 -10.02365 -9.95668 -9.15966 -8.24196
-6.31676 0.28946 0.36094 1.41031 1.44093 1.52720 1.90197 2.23966
2.34145 2.49289 2.93479 3.10991 3.72534 3.79165 3.92199 4.06664
4.11702 4.29933 4.35160 4.38037 4.42616 4.52481 4.72412 4.79643
4.89888 4.95108 5.06259 5.09426 5.19022 5.26026 5.27418 5.35220
5.55134 5.62961 5.74111 5.76760 6.06837 6.43259 6.71570 6.85116
7.34419 7.52052 8.87799
Molecular weight = 263.13amu
Principal moments of inertia in cm(-1)
A = 0.045058 B = 0.002971 C = 0.002895
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 621.278438 B = 9423.709750 C = 9668.932178
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C 0.043 3.957
3 O -0.331 6.331
4 C 0.126 3.874
5 C -0.210 4.210
6 C -0.064 4.064
7 C -0.147 4.147
8 C 0.167 3.833
9 N -0.722 5.722
10 C 0.519 3.481
11 O -0.585 6.585
12 C 0.008 3.992
13 C -0.537 4.537
14 H 0.056 0.944
15 C 0.009 3.991
16 N -0.926 5.926
17 Si 0.965 3.035
18 H -0.272 1.272
19 H -0.274 1.274
20 H -0.272 1.272
21 C -0.063 4.063
22 C -0.162 4.162
23 H 0.063 0.937
24 H 0.099 0.901
25 H 0.062 0.938
26 H 0.072 0.928
27 H 0.070 0.930
28 H 0.149 0.851
29 H 0.136 0.864
30 H 0.064 0.936
31 H 0.065 0.935
32 H 0.409 0.591
33 H 0.041 0.959
34 H 0.042 0.958
35 H 0.267 0.733
36 H 0.140 0.860
37 H 0.142 0.858
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -22.965 -5.467 -10.179 25.708
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.031 4.031
3 O -0.245 6.245
4 C 0.080 3.920
5 C -0.228 4.228
6 C -0.082 4.082
7 C -0.147 4.147
8 C 0.045 3.955
9 N -0.376 5.376
10 C 0.308 3.692
11 O -0.465 6.465
12 C -0.032 4.032
13 C -0.576 4.576
14 H 0.074 0.926
15 C -0.190 4.190
16 N -0.565 5.565
17 Si 0.790 3.210
18 H -0.197 1.197
19 H -0.199 1.199
20 H -0.197 1.197
21 C -0.081 4.081
22 C -0.181 4.181
23 H 0.082 0.918
24 H 0.117 0.883
25 H 0.081 0.919
26 H 0.090 0.910
27 H 0.088 0.912
28 H 0.167 0.833
29 H 0.154 0.846
30 H 0.083 0.917
31 H 0.083 0.917
32 H 0.244 0.756
33 H 0.059 0.941
34 H 0.060 0.940
35 H 0.076 0.924
36 H 0.158 0.842
37 H 0.160 0.840
Dipole moment (debyes) X Y Z Total
from point charges -22.560 -5.260 -10.661 25.500
hybrid contribution 0.770 -0.073 0.531 0.938
sum -21.790 -5.333 -10.130 24.615
Atomic orbital electron populations
1.21808 0.91507 1.04164 1.03197 1.23084 0.96914 0.80743 1.02357
1.86062 1.18697 1.31366 1.88401 1.19216 0.82726 0.94486 0.95524
1.21424 0.93728 0.98988 1.08703 1.21064 0.94898 0.96771 0.95496
1.19698 0.93850 0.94211 1.06960 1.20052 0.90120 1.01936 0.83439
1.46139 1.07584 1.74941 1.08894 1.21451 0.81632 0.73500 0.92612
1.90512 1.56682 1.51448 1.47897 1.19077 0.96739 0.98765 0.88580
1.21359 0.93036 1.50187 0.92977 0.92602 1.25813 1.03635 0.94656
0.94885 1.70026 1.37787 1.50940 0.97789 0.85496 0.79259 0.78947
0.77298 1.19717 1.19909 1.19709 1.21054 0.92156 0.99174 0.95725
1.20604 0.95137 0.95500 1.06830 0.91761 0.88251 0.91927 0.90964
0.91190 0.83323 0.84619 0.91720 0.91695 0.75574 0.94060 0.94046
0.92384 0.84241 0.83998
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.32 10.28 71.98 0.74 -0.58 16
2 C 0.04 0.53 5.46 71.98 0.39 0.93 16
3 O -0.33 -6.34 10.14 -92.39 -0.94 -7.28 16
4 C 0.13 2.59 6.69 22.51 0.15 2.74 16
5 C -0.21 -3.95 9.04 22.37 0.20 -3.75 16
6 C -0.06 -1.34 9.69 22.25 0.22 -1.13 16
7 C -0.15 -3.46 5.25 -19.85 -0.10 -3.56 16
8 C 0.17 4.91 5.80 85.63 0.50 5.41 16
9 N -0.72 -25.02 5.55 -466.78 -2.59 -27.61 16
10 C 0.52 24.21 7.82 87.66 0.69 24.90 16
11 O -0.59 -31.48 15.46 -3.05 -0.05 -31.52 16
12 C 0.01 0.41 5.46 29.10 0.16 0.57 16
13 C -0.54 -32.15 8.92 25.60 0.23 -31.92 16
14 H 0.06 3.50 6.75 -2.91 -0.02 3.48 16
15 C 0.01 0.50 5.46 84.66 0.46 0.96 16
16 N -0.93 -54.83 13.29 21.45 0.28 -54.54 16
17 Si 0.97 45.76 29.54 68.60 2.03 47.79 16
18 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16
19 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16
20 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16
21 C -0.06 -1.36 9.69 22.25 0.22 -1.14 16
22 C -0.16 -3.35 9.99 22.37 0.22 -3.12 16
23 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16
24 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16
25 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16
26 H 0.07 0.73 7.68 -2.39 -0.02 0.71 16
27 H 0.07 0.75 7.65 -2.39 -0.02 0.74 16
28 H 0.15 2.06 6.30 -2.91 -0.02 2.04 16
29 H 0.14 2.58 8.06 -2.91 -0.02 2.56 16
30 H 0.06 1.96 8.08 -2.39 -0.02 1.94 16
31 H 0.06 1.97 8.08 -2.39 -0.02 1.95 16
32 H 0.41 12.31 8.46 -92.71 -0.78 11.52 16
33 H 0.04 2.19 8.14 -2.39 -0.02 2.17 16
34 H 0.04 2.19 8.14 -2.39 -0.02 2.17 16
35 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16
36 H 0.14 2.73 8.06 -2.91 -0.02 2.71 16
37 H 0.14 2.51 8.06 -2.91 -0.02 2.49 16
Total: -1.00 -71.26 321.04 3.09 -68.17
By element:
Atomic # 1 Polarization: 14.40 SS G_CDS: 0.28 Total: 14.69 kcal
Atomic # 6 Polarization: -13.76 SS G_CDS: 4.07 Total: -9.69 kcal
Atomic # 7 Polarization: -79.85 SS G_CDS: -2.30 Total: -82.15 kcal
Atomic # 8 Polarization: -37.82 SS G_CDS: -0.98 Total: -38.80 kcal
Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal
Total: -71.26 3.09 -68.17 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000057520471.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -19.030 kcal
(2) G-P(sol) polarization free energy of solvation -71.264 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.293 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.091 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.173 kcal
(6) G-S(sol) free energy of system = (1) + (5) -87.203 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.39 seconds