Wall clock time and date at job start Mon Mar 30 2020 06:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47112 * 2 1 4 4 O 1.42893 * 109.47311 * 120.00488 * 2 1 3 5 5 C 1.35906 * 117.00746 * 85.78801 * 4 2 1 6 6 C 1.38871 * 119.97591 * 354.61073 * 5 4 2 7 7 C 1.38271 * 120.25085 * 179.72038 * 6 5 4 8 8 C 1.37985 * 120.20760 * 0.54902 * 7 6 5 9 9 C 1.39635 * 119.96096 * 359.72704 * 8 7 6 10 10 C 1.47738 * 120.12235 * 180.02562 * 9 8 7 11 11 O 1.21592 * 120.00011 * 221.35868 * 10 9 8 12 12 N 1.34775 * 120.00188 * 41.35401 * 10 9 8 13 13 C 1.46500 * 120.00005 * 356.13718 * 12 10 9 14 14 C 1.36878 * 119.99810 * 176.12851 * 12 10 9 15 15 H 1.07999 * 120.00200 * 336.01793 * 14 12 10 16 16 C 1.39054 * 119.99328 * 156.01441 * 14 12 10 17 17 N 1.31358 * 120.00311 * 353.11853 * 16 14 12 18 18 Si 1.86801 * 119.99476 * 173.11673 * 16 14 12 19 19 H 1.48506 * 109.47242 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.46916 * 120.00137 * 18 16 14 21 21 H 1.48504 * 109.47127 * 240.00215 * 18 16 14 22 22 C 1.38427 * 119.98715 * 174.88161 * 5 4 2 23 23 H 1.09000 * 109.46874 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46706 * 299.99970 * 1 2 3 25 25 H 1.09004 * 109.46812 * 59.99881 * 1 2 3 26 26 H 1.09009 * 109.46959 * 240.00312 * 2 1 3 27 27 H 1.09005 * 109.47022 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.46948 * 299.99526 * 3 2 1 29 29 H 1.08995 * 109.46928 * 60.00558 * 3 2 1 30 30 H 1.07997 * 119.87937 * 0.02562 * 6 5 4 31 31 H 1.07996 * 119.89111 * 180.27625 * 7 6 5 32 32 H 1.08003 * 120.01862 * 179.74708 * 8 7 6 33 33 H 1.08999 * 109.46909 * 25.31107 * 13 12 10 34 34 H 1.09000 * 109.47348 * 145.32187 * 13 12 10 35 35 H 1.09005 * 109.46904 * 265.31754 * 13 12 10 36 36 H 0.96997 * 119.99594 * 179.97438 * 17 16 14 37 37 H 1.08000 * 120.10593 * 359.97438 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 1.1666 5 6 2.1283 -2.0252 1.0923 6 6 1.6909 -2.7001 -0.0398 7 6 1.8174 -4.0745 -0.1239 8 6 2.3690 -4.7861 0.9217 9 6 2.8065 -4.1170 2.0666 10 6 3.3981 -4.8754 3.1880 11 8 3.1131 -4.5871 4.3343 12 7 4.2537 -5.8869 2.9404 13 6 4.5319 -6.2896 1.5596 14 6 4.8629 -6.5376 3.9791 15 1 4.9848 -6.0411 4.9304 16 6 5.3249 -7.8382 3.8094 17 7 5.0584 -8.4904 2.7007 18 14 6.3244 -8.6577 5.1580 19 1 6.4842 -7.7176 6.2965 20 1 5.6212 -9.8808 5.6215 21 1 7.6619 -9.0263 4.6284 22 6 2.6831 -2.7289 2.1474 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8934 -0.5138 -0.8901 27 1 3.1301 1.4425 -0.0005 28 1 1.6768 1.9563 -0.8900 29 1 1.6768 1.9563 0.8900 30 1 1.2548 -2.1490 -0.8598 31 1 1.4794 -4.5929 -1.0089 32 1 2.4627 -5.8600 0.8545 33 1 4.3549 -5.4460 0.8925 34 1 5.5712 -6.6073 1.4761 35 1 3.8763 -7.1154 1.2829 36 1 5.3810 -9.3975 2.5823 37 1 3.0200 -2.2056 3.0300 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061666429.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:07 Heat of formation + Delta-G solvation = -35.797706 kcal Electronic energy + Delta-G solvation = -19605.425246 eV Core-core repulsion = 16541.792218 eV Total energy + Delta-G solvation = -3063.633028 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.16314 -38.72974 -36.76047 -34.71849 -33.29029 -31.77580 -30.53656 -29.45184 -27.46515 -26.26571 -24.99151 -23.21790 -22.16985 -21.19527 -19.33429 -17.80812 -16.91946 -16.05159 -15.93663 -15.44022 -15.20859 -14.68967 -14.19587 -14.07583 -13.67101 -13.45846 -13.27278 -12.79750 -12.70625 -12.44313 -12.28665 -11.99684 -11.68814 -11.61886 -11.25875 -11.20541 -11.04307 -10.89042 -10.57114 -10.51545 -10.32617 -10.24625 -9.06226 -8.66500 -8.37602 -7.85001 -7.72218 -6.35400 -3.91822 1.44799 1.78148 3.13977 3.23119 3.24884 3.31880 3.74763 4.10969 4.34627 4.62241 4.75184 4.84375 4.90321 5.08671 5.14515 5.21664 5.33303 5.41071 5.54089 5.57493 5.62651 5.69784 5.81018 5.93267 5.98912 6.01535 6.31931 6.40179 6.55940 6.71904 6.89719 6.92537 7.01168 7.24204 7.51354 7.65580 8.10037 8.45537 9.14459 9.36245 9.94958 10.66503 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.043993 B = 0.004256 C = 0.004054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.308685 B = 6577.934852 C = 6905.311235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.076 3.924 3 C -0.148 4.148 4 O -0.312 6.312 5 C 0.119 3.881 6 C -0.210 4.210 7 C -0.091 4.091 8 C -0.133 4.133 9 C -0.053 4.053 10 C 0.474 3.526 11 O -0.585 6.585 12 N -0.431 5.431 13 C 0.103 3.897 14 C -0.302 4.302 15 H 0.101 0.899 16 C 0.031 3.969 17 N -0.879 5.879 18 Si 0.931 3.069 19 H -0.267 1.267 20 H -0.280 1.280 21 H -0.280 1.280 22 C -0.112 4.112 23 H 0.064 0.936 24 H 0.066 0.934 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.124 0.876 31 H 0.124 0.876 32 H 0.136 0.864 33 H 0.038 0.962 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.268 0.732 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.374 11.873 -10.876 16.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.020 3.980 3 C -0.206 4.206 4 O -0.226 6.226 5 C 0.074 3.926 6 C -0.229 4.229 7 C -0.109 4.109 8 C -0.152 4.152 9 C -0.056 4.056 10 C 0.263 3.737 11 O -0.471 6.471 12 N -0.147 5.147 13 C -0.040 4.040 14 C -0.430 4.430 15 H 0.119 0.881 16 C -0.172 4.172 17 N -0.519 5.519 18 Si 0.757 3.243 19 H -0.191 1.191 20 H -0.206 1.206 21 H -0.206 1.206 22 C -0.132 4.132 23 H 0.083 0.917 24 H 0.085 0.915 25 H 0.087 0.913 26 H 0.091 0.909 27 H 0.084 0.916 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.142 0.858 31 H 0.142 0.858 32 H 0.154 0.846 33 H 0.057 0.943 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -5.385 11.914 -10.227 16.599 hybrid contribution 0.356 -0.677 0.167 0.783 sum -5.029 11.237 -10.061 15.899 Atomic orbital electron populations 1.22380 0.95289 1.03203 1.02843 1.22382 0.94213 0.93574 0.87864 1.21851 1.02164 0.93740 1.02803 1.86122 1.81525 1.16824 1.38148 1.18780 0.96840 0.82288 0.94676 1.21235 1.07513 0.95635 0.98499 1.20820 0.98353 0.93203 0.98555 1.21585 0.99686 1.01066 0.92859 1.20096 0.97869 0.92934 0.94750 1.17935 0.82938 0.84918 0.87897 1.90620 1.63696 1.70884 1.21892 1.43501 1.36078 1.28401 1.06738 1.21907 1.02800 0.97172 0.82104 1.19768 1.33428 0.95921 0.93896 0.88134 1.25431 0.97977 0.95961 0.97870 1.69970 1.44180 1.12049 1.25651 0.85787 0.78834 0.79091 0.80584 1.19087 1.20583 1.20593 1.20416 1.02002 0.92636 0.98174 0.91686 0.91478 0.91296 0.90938 0.91648 0.90777 0.91508 0.85777 0.85846 0.84608 0.94345 0.91627 0.91758 0.92124 0.84914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.65 9.19 37.16 0.34 -1.31 16 2 C 0.08 0.81 2.84 -26.73 -0.08 0.73 16 3 C -0.15 -1.26 9.56 37.16 0.36 -0.90 16 4 O -0.31 -4.64 9.79 -19.44 -0.19 -4.83 16 5 C 0.12 1.96 6.60 -39.28 -0.26 1.70 16 6 C -0.21 -2.99 8.28 -39.33 -0.33 -3.31 16 7 C -0.09 -1.34 10.03 -39.66 -0.40 -1.74 16 8 C -0.13 -2.41 7.44 -39.15 -0.29 -2.70 16 9 C -0.05 -1.13 5.16 -104.99 -0.54 -1.67 16 10 C 0.47 12.39 7.27 -12.38 -0.09 12.30 16 11 O -0.59 -17.27 16.67 5.28 0.09 -17.18 16 12 N -0.43 -11.40 3.01 -123.31 -0.37 -11.77 16 13 C 0.10 2.36 7.15 59.85 0.43 2.79 16 14 C -0.30 -8.55 9.25 -15.00 -0.14 -8.68 16 15 H 0.10 2.96 7.45 -52.49 -0.39 2.57 16 16 C 0.03 0.83 5.22 -17.45 -0.09 0.73 16 17 N -0.88 -23.23 10.45 55.50 0.58 -22.65 16 18 Si 0.93 20.76 29.56 -169.99 -5.02 15.73 16 19 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 20 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 21 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 22 C -0.11 -2.20 9.59 -39.01 -0.37 -2.58 16 23 H 0.06 0.65 7.01 -51.93 -0.36 0.29 16 24 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.71 6.25 -51.92 -0.32 0.38 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.12 1.40 5.44 -52.49 -0.29 1.11 16 31 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 32 H 0.14 2.47 5.82 -52.48 -0.31 2.17 16 33 H 0.04 0.76 5.25 -51.93 -0.27 0.49 16 34 H 0.06 1.56 7.21 -51.93 -0.37 1.19 16 35 H 0.06 1.49 6.69 -51.93 -0.35 1.14 16 36 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 37 H 0.13 2.68 8.06 -52.49 -0.42 2.26 16 LS Contribution 304.65 15.07 4.59 4.59 Total: -1.00 -31.74 304.65 -6.55 -38.28 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -4.76 Total: 2.48 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: -1.46 Total: -4.65 kcal Atomic # 7 Polarization: -34.63 SS G_CDS: 0.21 Total: -34.42 kcal Atomic # 8 Polarization: -21.91 SS G_CDS: -0.10 Total: -22.02 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.74 -6.55 -38.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061666429.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.486 kcal (2) G-P(sol) polarization free energy of solvation -31.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds