Wall clock time and date at job start Mon Mar 30 2020 06:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47112 * 2 1 4 4 O 1.42893 * 109.47311 * 120.00488 * 2 1 3 5 5 C 1.35906 * 117.00746 * 85.78801 * 4 2 1 6 6 C 1.38871 * 119.97591 * 354.61073 * 5 4 2 7 7 C 1.38271 * 120.25085 * 179.72038 * 6 5 4 8 8 C 1.37985 * 120.20760 * 0.54902 * 7 6 5 9 9 C 1.39635 * 119.96096 * 359.72704 * 8 7 6 10 10 C 1.47738 * 120.12235 * 180.02562 * 9 8 7 11 11 O 1.21592 * 120.00011 * 221.35868 * 10 9 8 12 12 N 1.34775 * 120.00188 * 41.35401 * 10 9 8 13 13 C 1.46500 * 120.00005 * 356.13718 * 12 10 9 14 14 C 1.36878 * 119.99810 * 176.12851 * 12 10 9 15 15 H 1.07999 * 120.00200 * 336.01793 * 14 12 10 16 16 C 1.39054 * 119.99328 * 156.01441 * 14 12 10 17 17 N 1.31358 * 120.00311 * 353.11853 * 16 14 12 18 18 Si 1.86801 * 119.99476 * 173.11673 * 16 14 12 19 19 H 1.48506 * 109.47242 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.46916 * 120.00137 * 18 16 14 21 21 H 1.48504 * 109.47127 * 240.00215 * 18 16 14 22 22 C 1.38427 * 119.98715 * 174.88161 * 5 4 2 23 23 H 1.09000 * 109.46874 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46706 * 299.99970 * 1 2 3 25 25 H 1.09004 * 109.46812 * 59.99881 * 1 2 3 26 26 H 1.09009 * 109.46959 * 240.00312 * 2 1 3 27 27 H 1.09005 * 109.47022 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.46948 * 299.99526 * 3 2 1 29 29 H 1.08995 * 109.46928 * 60.00558 * 3 2 1 30 30 H 1.07997 * 119.87937 * 0.02562 * 6 5 4 31 31 H 1.07996 * 119.89111 * 180.27625 * 7 6 5 32 32 H 1.08003 * 120.01862 * 179.74708 * 8 7 6 33 33 H 1.08999 * 109.46909 * 25.31107 * 13 12 10 34 34 H 1.09000 * 109.47348 * 145.32187 * 13 12 10 35 35 H 1.09005 * 109.46904 * 265.31754 * 13 12 10 36 36 H 0.96997 * 119.99594 * 179.97438 * 17 16 14 37 37 H 1.08000 * 120.10593 * 359.97438 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 1.1666 5 6 2.1283 -2.0252 1.0923 6 6 1.6909 -2.7001 -0.0398 7 6 1.8174 -4.0745 -0.1239 8 6 2.3690 -4.7861 0.9217 9 6 2.8065 -4.1170 2.0666 10 6 3.3981 -4.8754 3.1880 11 8 3.1131 -4.5871 4.3343 12 7 4.2537 -5.8869 2.9404 13 6 4.5319 -6.2896 1.5596 14 6 4.8629 -6.5376 3.9791 15 1 4.9848 -6.0411 4.9304 16 6 5.3249 -7.8382 3.8094 17 7 5.0584 -8.4904 2.7007 18 14 6.3244 -8.6577 5.1580 19 1 6.4842 -7.7176 6.2965 20 1 5.6212 -9.8808 5.6215 21 1 7.6619 -9.0263 4.6284 22 6 2.6831 -2.7289 2.1474 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8934 -0.5138 -0.8901 27 1 3.1301 1.4425 -0.0005 28 1 1.6768 1.9563 -0.8900 29 1 1.6768 1.9563 0.8900 30 1 1.2548 -2.1490 -0.8598 31 1 1.4794 -4.5929 -1.0089 32 1 2.4627 -5.8600 0.8545 33 1 4.3549 -5.4460 0.8925 34 1 5.5712 -6.6073 1.4761 35 1 3.8763 -7.1154 1.2829 36 1 5.3810 -9.3975 2.5823 37 1 3.0200 -2.2056 3.0300 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061666429.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:07 Heat of formation + Delta-G solvation = -55.727292 kcal Electronic energy + Delta-G solvation = -19606.289458 eV Core-core repulsion = 16541.792218 eV Total energy + Delta-G solvation = -3064.497239 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.48710 -40.39755 -38.19324 -36.79002 -34.22483 -33.73360 -31.99269 -30.81437 -28.31936 -28.02348 -26.86675 -24.64367 -23.48987 -22.43489 -20.78834 -19.31502 -18.87710 -17.69763 -17.17542 -16.89927 -16.57625 -16.22378 -15.94948 -15.69565 -15.01174 -14.82895 -14.48985 -14.30331 -13.86491 -13.63402 -13.54933 -13.24048 -13.13351 -13.01189 -12.82670 -12.72702 -12.41071 -12.31563 -12.27639 -12.11612 -11.63602 -11.52766 -11.06573 -10.55274 -9.95936 -9.77074 -9.15628 -8.38920 -6.06740 0.02183 0.44747 1.35863 1.39551 1.53984 1.96775 2.15654 2.29568 2.77339 3.04067 3.09188 3.81440 3.84065 3.92430 4.04455 4.08192 4.23373 4.28035 4.35982 4.57402 4.62229 4.73524 4.85064 4.86745 4.90541 4.98925 5.02310 5.18842 5.29932 5.32053 5.33057 5.37322 5.40396 5.50912 5.73752 6.03110 6.41346 6.51135 7.07120 7.33386 7.91678 8.61553 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.043993 B = 0.004256 C = 0.004054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.308685 B = 6577.934852 C = 6905.311235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.063 3.937 3 C -0.147 4.147 4 O -0.330 6.330 5 C 0.126 3.874 6 C -0.188 4.188 7 C -0.071 4.071 8 C -0.141 4.141 9 C -0.080 4.080 10 C 0.462 3.538 11 O -0.638 6.638 12 N -0.443 5.443 13 C 0.118 3.882 14 C -0.349 4.349 15 H 0.071 0.929 16 C 0.002 3.998 17 N -0.889 5.889 18 Si 0.996 3.004 19 H -0.275 1.275 20 H -0.271 1.271 21 H -0.261 1.261 22 C -0.137 4.137 23 H 0.058 0.942 24 H 0.057 0.943 25 H 0.099 0.901 26 H 0.090 0.910 27 H 0.058 0.942 28 H 0.104 0.896 29 H 0.060 0.940 30 H 0.168 0.832 31 H 0.171 0.829 32 H 0.132 0.868 33 H 0.068 0.932 34 H 0.051 0.949 35 H 0.060 0.940 36 H 0.278 0.722 37 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.226 12.309 -14.185 19.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.008 3.992 3 C -0.204 4.204 4 O -0.245 6.245 5 C 0.081 3.919 6 C -0.207 4.207 7 C -0.089 4.089 8 C -0.160 4.160 9 C -0.083 4.083 10 C 0.253 3.747 11 O -0.527 6.527 12 N -0.159 5.159 13 C -0.024 4.024 14 C -0.477 4.477 15 H 0.089 0.911 16 C -0.201 4.201 17 N -0.527 5.527 18 Si 0.819 3.181 19 H -0.200 1.200 20 H -0.196 1.196 21 H -0.186 1.186 22 C -0.157 4.157 23 H 0.077 0.923 24 H 0.076 0.924 25 H 0.118 0.882 26 H 0.107 0.893 27 H 0.077 0.923 28 H 0.123 0.877 29 H 0.079 0.921 30 H 0.185 0.815 31 H 0.188 0.812 32 H 0.150 0.850 33 H 0.087 0.913 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -6.236 12.350 -13.591 19.394 hybrid contribution 0.531 -0.679 1.090 1.390 sum -5.704 11.672 -12.501 18.029 Atomic orbital electron populations 1.22385 0.93987 1.03114 1.03984 1.22849 0.95317 0.94289 0.86787 1.21900 1.01824 0.92639 1.04033 1.86132 1.81566 1.15965 1.40835 1.18728 0.95731 0.83233 0.94190 1.21695 1.05106 0.95641 0.98236 1.21269 0.95792 0.93357 0.98455 1.21592 1.00530 1.01045 0.92784 1.19712 1.00565 0.93331 0.94730 1.18798 0.82351 0.84829 0.88754 1.90547 1.65449 1.72252 1.24492 1.43739 1.35933 1.28564 1.07680 1.21844 1.01597 0.98126 0.80880 1.19727 1.36481 0.97437 0.94094 0.91064 1.26204 0.98085 0.95570 1.00214 1.70021 1.43745 1.12478 1.26453 0.84846 0.78027 0.77740 0.77512 1.19997 1.19618 1.18564 1.20274 1.04102 0.92359 0.98979 0.92333 0.92378 0.88223 0.89257 0.92286 0.87696 0.92127 0.81510 0.81196 0.84998 0.91343 0.93044 0.92174 0.91234 0.87448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.61 9.19 71.98 0.66 -1.95 16 2 C 0.06 1.12 2.84 30.60 0.09 1.21 16 3 C -0.15 -2.07 9.56 71.98 0.69 -1.38 16 4 O -0.33 -9.37 9.79 -92.49 -0.91 -10.28 16 5 C 0.13 3.99 6.60 22.47 0.15 4.14 16 6 C -0.19 -4.58 8.28 22.43 0.19 -4.39 16 7 C -0.07 -1.80 10.03 22.22 0.22 -1.58 16 8 C -0.14 -4.93 7.44 22.55 0.17 -4.76 16 9 C -0.08 -3.52 5.16 -20.10 -0.10 -3.63 16 10 C 0.46 25.71 7.27 86.76 0.63 26.34 16 11 O -0.64 -40.74 16.67 -4.00 -0.07 -40.81 16 12 N -0.44 -24.69 3.01 -662.30 -2.00 -26.68 16 13 C 0.12 5.48 7.15 127.77 0.91 6.40 16 14 C -0.35 -20.86 9.25 84.10 0.78 -20.08 16 15 H 0.07 4.55 7.45 -2.91 -0.02 4.52 16 16 C 0.00 0.11 5.22 84.96 0.44 0.55 16 17 N -0.89 -47.11 10.45 21.68 0.23 -46.89 16 18 Si 1.00 43.10 29.56 68.60 2.03 45.12 16 19 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 20 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 21 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 22 C -0.14 -5.57 9.59 22.64 0.22 -5.36 16 23 H 0.06 0.94 7.01 -2.39 -0.02 0.93 16 24 H 0.06 0.96 8.14 -2.39 -0.02 0.95 16 25 H 0.10 0.87 8.14 -2.38 -0.02 0.85 16 26 H 0.09 1.30 6.25 -2.38 -0.01 1.28 16 27 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 28 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.17 2.68 5.44 -2.91 -0.02 2.67 16 31 H 0.17 2.82 8.06 -2.91 -0.02 2.80 16 32 H 0.13 4.69 5.82 -2.91 -0.02 4.68 16 33 H 0.07 2.72 5.25 -2.39 -0.01 2.71 16 34 H 0.05 2.49 7.21 -2.39 -0.02 2.47 16 35 H 0.06 2.81 6.69 -2.38 -0.02 2.80 16 36 H 0.28 13.56 8.31 -92.71 -0.77 12.79 16 37 H 0.11 4.75 8.06 -2.91 -0.02 4.73 16 Total: -1.00 -74.49 304.65 5.40 -69.08 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: 1.07 Total: 14.93 kcal Atomic # 6 Polarization: -9.52 SS G_CDS: 5.04 Total: -4.48 kcal Atomic # 7 Polarization: -71.80 SS G_CDS: -1.77 Total: -73.57 kcal Atomic # 8 Polarization: -50.11 SS G_CDS: -0.97 Total: -51.08 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.12 kcal Total: -74.49 5.40 -69.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061666429.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.357 kcal (2) G-P(sol) polarization free energy of solvation -74.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds