Wall clock time and date at job start Mon Mar 30 2020 06:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47504 * 2 1 4 4 O 1.42906 * 109.47339 * 120.00139 * 2 1 3 5 5 C 1.35916 * 116.99661 * 84.98501 * 4 2 1 6 6 C 1.38846 * 119.98558 * 354.33423 * 5 4 2 7 7 C 1.38253 * 120.23725 * 179.72736 * 6 5 4 8 8 C 1.38001 * 120.20312 * 0.55004 * 7 6 5 9 9 C 1.39569 * 119.96964 * 359.72946 * 8 7 6 10 10 C 1.47854 * 120.12174 * 180.02562 * 9 8 7 11 11 O 1.21550 * 120.00345 * 179.97438 * 10 9 8 12 12 N 1.34779 * 119.99928 * 359.97348 * 10 9 8 13 13 C 1.46496 * 120.00016 * 180.02562 * 12 10 9 14 14 C 1.50701 * 109.47368 * 180.02562 * 13 12 10 15 15 H 1.08000 * 119.99560 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00317 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99941 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00065 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47208 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47322 * 119.99655 * 18 16 14 21 21 H 1.48503 * 109.47000 * 239.99888 * 18 16 14 22 22 C 1.38457 * 119.97843 * 174.61290 * 5 4 2 23 23 H 1.08997 * 109.47151 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46894 * 300.00183 * 1 2 3 25 25 H 1.08996 * 109.47038 * 59.99638 * 1 2 3 26 26 H 1.09003 * 109.47345 * 240.00007 * 2 1 3 27 27 H 1.09002 * 109.47102 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.47017 * 300.00028 * 3 2 1 29 29 H 1.09000 * 109.47195 * 60.00001 * 3 2 1 30 30 H 1.07994 * 119.88421 * 0.02562 * 6 5 4 31 31 H 1.07996 * 119.89604 * 180.25714 * 7 6 5 32 32 H 1.08005 * 120.02105 * 179.74985 * 8 7 6 33 33 H 0.96995 * 119.99790 * 0.02562 * 12 10 9 34 34 H 1.09007 * 109.46985 * 299.99518 * 13 12 10 35 35 H 1.08997 * 109.47747 * 60.00126 * 13 12 10 36 36 H 0.96999 * 119.99475 * 179.97438 * 17 16 14 37 37 H 1.07995 * 120.10581 * 359.97438 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 2.1123 -2.0270 1.0979 6 6 1.6545 -2.7025 -0.0255 7 6 1.7648 -4.0784 -0.1035 8 6 2.3203 -4.7906 0.9398 9 6 2.7779 -4.1209 2.0756 10 6 3.3742 -4.8805 3.1951 11 8 3.7724 -4.2950 4.1830 12 7 3.4761 -6.2224 3.1203 13 6 4.0664 -6.9751 4.2298 14 6 4.0630 -8.4451 3.8976 15 1 3.6609 -8.7846 2.9545 16 6 4.5722 -9.3566 4.7981 17 7 5.0614 -8.9432 5.9467 18 14 4.5673 -11.1787 4.3866 19 1 3.9662 -11.3813 3.0439 20 1 5.9614 -11.6902 4.3876 21 1 3.7697 -11.9131 5.4014 22 6 2.6712 -2.7317 2.1504 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 1.8934 -0.5138 -0.8900 27 1 3.1301 1.4424 -0.0005 28 1 1.6768 1.9563 -0.8900 29 1 1.6768 1.9563 0.8900 30 1 1.2152 -2.1508 -0.8434 31 1 1.4107 -4.5978 -0.9817 32 1 2.4013 -5.8658 0.8774 33 1 3.1587 -6.6896 2.3318 34 1 5.0918 -6.6417 4.3902 35 1 3.4833 -6.8055 5.1349 36 1 5.4193 -9.5845 6.5803 37 1 3.0239 -2.2078 3.0265 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061666441.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:10 Heat of formation + Delta-G solvation = -61.421933 kcal Electronic energy + Delta-G solvation = -18855.775860 eV Core-core repulsion = 15791.031682 eV Total energy + Delta-G solvation = -3064.744178 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.44780 -38.99785 -37.12312 -34.27726 -33.48536 -32.38998 -31.03633 -29.78615 -27.67869 -27.15727 -24.24850 -22.86272 -22.18740 -21.34522 -19.68640 -18.62073 -16.86666 -16.27798 -15.98842 -15.68652 -15.42082 -15.01356 -14.48072 -14.37686 -13.96917 -13.76765 -13.56912 -13.05365 -12.82802 -12.67419 -12.49937 -12.14509 -12.02777 -11.75290 -11.69191 -11.43688 -10.96072 -10.95650 -10.88572 -10.81114 -10.32322 -9.38974 -9.19920 -8.96415 -8.74704 -8.26033 -7.88984 -6.16874 -4.23886 0.97523 1.42802 2.98302 3.23796 3.28286 3.30796 3.33867 4.05994 4.14646 4.36427 4.44365 4.57358 4.70492 4.79073 4.89148 5.10175 5.19448 5.19546 5.23544 5.36395 5.38887 5.42981 5.49863 5.68134 5.77180 5.83345 5.96460 6.24576 6.36721 6.45783 6.64154 7.30305 7.35717 7.39789 7.51027 7.65846 7.95967 8.58830 8.76286 9.04764 9.42520 10.93435 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.048825 B = 0.003362 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.342397 B = 8327.606758 C = 8767.430685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.076 3.924 3 C -0.149 4.149 4 O -0.309 6.309 5 C 0.121 3.879 6 C -0.197 4.197 7 C -0.088 4.088 8 C -0.126 4.126 9 C -0.081 4.081 10 C 0.538 3.462 11 O -0.548 6.548 12 N -0.702 5.702 13 C 0.248 3.752 14 C -0.543 4.543 15 H 0.064 0.936 16 C 0.063 3.937 17 N -0.885 5.885 18 Si 0.904 3.096 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.282 1.282 22 C -0.098 4.098 23 H 0.064 0.936 24 H 0.068 0.932 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.065 0.935 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.129 0.871 31 H 0.128 0.872 32 H 0.131 0.869 33 H 0.391 0.609 34 H 0.030 0.970 35 H 0.030 0.970 36 H 0.266 0.734 37 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.866 15.319 -15.990 23.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.020 3.980 3 C -0.206 4.206 4 O -0.224 6.224 5 C 0.076 3.924 6 C -0.216 4.216 7 C -0.107 4.107 8 C -0.145 4.145 9 C -0.084 4.084 10 C 0.323 3.677 11 O -0.428 6.428 12 N -0.351 5.351 13 C 0.128 3.872 14 C -0.582 4.582 15 H 0.082 0.918 16 C -0.140 4.140 17 N -0.522 5.522 18 Si 0.732 3.268 19 H -0.196 1.196 20 H -0.208 1.208 21 H -0.208 1.208 22 C -0.118 4.118 23 H 0.083 0.917 24 H 0.087 0.913 25 H 0.089 0.911 26 H 0.091 0.909 27 H 0.084 0.916 28 H 0.094 0.906 29 H 0.086 0.914 30 H 0.147 0.853 31 H 0.146 0.854 32 H 0.149 0.851 33 H 0.225 0.775 34 H 0.048 0.952 35 H 0.048 0.952 36 H 0.075 0.925 37 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -8.432 15.757 -14.918 23.279 hybrid contribution -0.242 -1.326 -0.747 1.541 sum -8.673 14.431 -15.665 22.997 Atomic orbital electron populations 1.22397 0.95115 1.03223 1.03117 1.22430 0.94314 0.93737 0.87546 1.21855 1.02253 0.93511 1.02993 1.86152 1.81330 1.16307 1.38572 1.18814 0.96444 0.82644 0.94511 1.21377 1.05964 0.95649 0.98586 1.20849 0.98133 0.93220 0.98451 1.21315 0.99634 1.00349 0.93227 1.20062 0.99736 0.93326 0.95268 1.18193 0.80031 0.83085 0.86384 1.90737 1.49916 1.69480 1.32672 1.46421 1.60535 1.05579 1.22526 1.19179 0.94005 0.89807 0.84258 1.21247 1.42208 0.90826 1.03874 0.91810 1.24954 0.94769 0.99574 0.94731 1.69988 1.39484 1.34847 1.07896 0.86350 0.77843 0.84193 0.78457 1.19616 1.20780 1.20785 1.20506 1.00200 0.92559 0.98520 0.91707 0.91325 0.91103 0.90900 0.91552 0.90613 0.91384 0.85289 0.85363 0.85132 0.77507 0.95237 0.95232 0.92465 0.83954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.33 9.17 37.16 0.34 -0.98 16 2 C 0.08 0.65 2.84 -26.73 -0.08 0.58 16 3 C -0.15 -1.03 9.56 37.16 0.36 -0.67 16 4 O -0.31 -3.89 9.80 -19.47 -0.19 -4.08 16 5 C 0.12 1.64 6.59 -39.28 -0.26 1.38 16 6 C -0.20 -2.22 8.24 -39.35 -0.32 -2.55 16 7 C -0.09 -1.00 10.03 -39.66 -0.40 -1.40 16 8 C -0.13 -1.74 9.54 -39.17 -0.37 -2.11 16 9 C -0.08 -1.37 5.87 -104.99 -0.62 -1.99 16 10 C 0.54 11.56 7.77 -12.32 -0.10 11.46 16 11 O -0.55 -13.86 16.35 5.32 0.09 -13.78 16 12 N -0.70 -15.32 5.50 -62.43 -0.34 -15.67 16 13 C 0.25 6.66 5.43 -5.20 -0.03 6.63 16 14 C -0.54 -14.79 9.28 -34.44 -0.32 -15.11 16 15 H 0.06 1.62 7.60 -52.49 -0.40 1.22 16 16 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 17 N -0.88 -26.15 13.29 55.43 0.74 -25.42 16 18 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 19 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 C -0.10 -1.59 9.53 -39.02 -0.37 -1.97 16 23 H 0.06 0.51 6.90 -51.93 -0.36 0.16 16 24 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.07 0.56 6.31 -51.93 -0.33 0.23 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.13 1.10 5.40 -52.49 -0.28 0.82 16 31 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 32 H 0.13 1.61 6.40 -52.48 -0.34 1.27 16 33 H 0.39 7.26 6.35 -40.82 -0.26 7.00 16 34 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 37 H 0.14 2.44 7.65 -52.49 -0.40 2.04 16 LS Contribution 315.07 15.07 4.75 4.75 Total: -1.00 -32.66 315.07 -7.13 -39.79 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -4.88 Total: 3.63 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: -2.26 Total: -5.05 kcal Atomic # 7 Polarization: -41.48 SS G_CDS: 0.39 Total: -41.08 kcal Atomic # 8 Polarization: -17.75 SS G_CDS: -0.10 Total: -17.86 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.66 -7.13 -39.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061666441.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.635 kcal (2) G-P(sol) polarization free energy of solvation -32.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds