Wall clock time and date at job start Mon Mar 30 2020 06:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47504 * 2 1 4 4 O 1.42906 * 109.47339 * 120.00139 * 2 1 3 5 5 C 1.35916 * 116.99661 * 84.98501 * 4 2 1 6 6 C 1.38846 * 119.98558 * 354.33423 * 5 4 2 7 7 C 1.38253 * 120.23725 * 179.72736 * 6 5 4 8 8 C 1.38001 * 120.20312 * 0.55004 * 7 6 5 9 9 C 1.39569 * 119.96964 * 359.72946 * 8 7 6 10 10 C 1.47854 * 120.12174 * 180.02562 * 9 8 7 11 11 O 1.21550 * 120.00345 * 179.97438 * 10 9 8 12 12 N 1.34779 * 119.99928 * 359.97348 * 10 9 8 13 13 C 1.46496 * 120.00016 * 180.02562 * 12 10 9 14 14 C 1.50701 * 109.47368 * 180.02562 * 13 12 10 15 15 H 1.08000 * 119.99560 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00317 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99941 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00065 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47208 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47322 * 119.99655 * 18 16 14 21 21 H 1.48503 * 109.47000 * 239.99888 * 18 16 14 22 22 C 1.38457 * 119.97843 * 174.61290 * 5 4 2 23 23 H 1.08997 * 109.47151 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46894 * 300.00183 * 1 2 3 25 25 H 1.08996 * 109.47038 * 59.99638 * 1 2 3 26 26 H 1.09003 * 109.47345 * 240.00007 * 2 1 3 27 27 H 1.09002 * 109.47102 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.47017 * 300.00028 * 3 2 1 29 29 H 1.09000 * 109.47195 * 60.00001 * 3 2 1 30 30 H 1.07994 * 119.88421 * 0.02562 * 6 5 4 31 31 H 1.07996 * 119.89604 * 180.25714 * 7 6 5 32 32 H 1.08005 * 120.02105 * 179.74985 * 8 7 6 33 33 H 0.96995 * 119.99790 * 0.02562 * 12 10 9 34 34 H 1.09007 * 109.46985 * 299.99518 * 13 12 10 35 35 H 1.08997 * 109.47747 * 60.00126 * 13 12 10 36 36 H 0.96999 * 119.99475 * 179.97438 * 17 16 14 37 37 H 1.07995 * 120.10581 * 359.97438 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 2.1123 -2.0270 1.0979 6 6 1.6545 -2.7025 -0.0255 7 6 1.7648 -4.0784 -0.1035 8 6 2.3203 -4.7906 0.9398 9 6 2.7779 -4.1209 2.0756 10 6 3.3742 -4.8805 3.1951 11 8 3.7724 -4.2950 4.1830 12 7 3.4761 -6.2224 3.1203 13 6 4.0664 -6.9751 4.2298 14 6 4.0630 -8.4451 3.8976 15 1 3.6609 -8.7846 2.9545 16 6 4.5722 -9.3566 4.7981 17 7 5.0614 -8.9432 5.9467 18 14 4.5673 -11.1787 4.3866 19 1 3.9662 -11.3813 3.0439 20 1 5.9614 -11.6902 4.3876 21 1 3.7697 -11.9131 5.4014 22 6 2.6712 -2.7317 2.1504 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 1.8934 -0.5138 -0.8900 27 1 3.1301 1.4424 -0.0005 28 1 1.6768 1.9563 -0.8900 29 1 1.6768 1.9563 0.8900 30 1 1.2152 -2.1508 -0.8434 31 1 1.4107 -4.5978 -0.9817 32 1 2.4013 -5.8658 0.8774 33 1 3.1587 -6.6896 2.3318 34 1 5.0918 -6.6417 4.3902 35 1 3.4833 -6.8055 5.1349 36 1 5.4193 -9.5845 6.5803 37 1 3.0239 -2.2078 3.0265 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061666441.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:10 Heat of formation + Delta-G solvation = -83.721875 kcal Electronic energy + Delta-G solvation = -18856.742858 eV Core-core repulsion = 15791.031682 eV Total energy + Delta-G solvation = -3065.711176 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.53420 -40.48879 -38.29908 -36.26823 -34.50348 -34.12477 -32.24445 -30.90308 -29.22730 -28.12792 -25.72282 -24.34345 -23.36038 -22.55796 -21.11160 -19.89603 -18.48723 -17.54546 -17.34967 -17.03280 -16.48252 -16.45240 -16.18079 -16.07013 -14.92317 -14.90746 -14.59185 -14.46657 -14.11340 -14.03707 -13.62644 -13.38399 -13.09608 -12.90936 -12.83423 -12.74820 -12.61277 -12.33654 -12.21562 -11.73649 -11.58886 -11.47582 -10.98892 -10.83726 -10.16845 -9.85105 -9.26773 -8.30064 -6.47275 -0.21880 0.38460 1.43795 1.45436 1.58955 1.85282 2.04494 2.34545 2.57342 2.83206 3.05211 3.71297 3.76433 3.89039 4.01497 4.02691 4.16283 4.19869 4.30041 4.50245 4.71690 4.78258 4.84198 4.88464 4.96149 5.06567 5.16296 5.19430 5.27755 5.29250 5.32753 5.35887 5.42448 5.60060 5.70916 5.81174 6.45341 6.61985 6.79669 7.19707 7.35990 8.82692 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.048825 B = 0.003362 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.342397 B = 8327.606758 C = 8767.430685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.064 3.936 3 C -0.148 4.148 4 O -0.331 6.331 5 C 0.121 3.879 6 C -0.177 4.177 7 C -0.073 4.073 8 C -0.124 4.124 9 C -0.104 4.104 10 C 0.535 3.465 11 O -0.600 6.600 12 N -0.695 5.695 13 C 0.264 3.736 14 C -0.556 4.556 15 H 0.087 0.913 16 C 0.003 3.997 17 N -0.932 5.932 18 Si 0.988 3.012 19 H -0.250 1.250 20 H -0.279 1.279 21 H -0.279 1.279 22 C -0.124 4.124 23 H 0.061 0.939 24 H 0.057 0.943 25 H 0.098 0.902 26 H 0.090 0.910 27 H 0.058 0.942 28 H 0.104 0.896 29 H 0.059 0.941 30 H 0.167 0.833 31 H 0.175 0.825 32 H 0.146 0.854 33 H 0.409 0.591 34 H -0.010 1.010 35 H -0.010 1.010 36 H 0.269 0.731 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.715 14.628 -20.270 27.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.009 3.991 3 C -0.205 4.205 4 O -0.246 6.246 5 C 0.075 3.925 6 C -0.196 4.196 7 C -0.091 4.091 8 C -0.143 4.143 9 C -0.107 4.107 10 C 0.324 3.676 11 O -0.483 6.483 12 N -0.344 5.344 13 C 0.142 3.858 14 C -0.593 4.593 15 H 0.105 0.895 16 C -0.197 4.197 17 N -0.570 5.570 18 Si 0.811 3.189 19 H -0.174 1.174 20 H -0.204 1.204 21 H -0.205 1.205 22 C -0.144 4.144 23 H 0.080 0.920 24 H 0.076 0.924 25 H 0.117 0.883 26 H 0.108 0.892 27 H 0.077 0.923 28 H 0.122 0.878 29 H 0.079 0.921 30 H 0.185 0.815 31 H 0.192 0.808 32 H 0.164 0.836 33 H 0.247 0.753 34 H 0.008 0.992 35 H 0.008 0.992 36 H 0.078 0.922 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -10.308 15.085 -19.253 26.542 hybrid contribution 0.290 -0.924 0.524 1.101 sum -10.019 14.161 -18.729 25.528 Atomic orbital electron populations 1.22397 0.93905 1.03260 1.04008 1.22840 0.95333 0.94242 0.86682 1.21906 1.01835 0.92766 1.04036 1.86154 1.81531 1.15860 1.41011 1.18794 0.96000 0.83342 0.94341 1.21822 1.03661 0.95971 0.98107 1.21331 0.95946 0.93158 0.98626 1.21526 0.99055 1.01229 0.92486 1.19629 1.02638 0.93273 0.95178 1.18976 0.78813 0.82829 0.87029 1.90694 1.52071 1.70369 1.35170 1.46101 1.60561 1.05809 1.21973 1.18647 0.91431 0.91055 0.84699 1.21624 1.42263 0.90570 1.04867 0.89512 1.26110 0.93886 1.05416 0.94286 1.70154 1.40484 1.37019 1.09357 0.85060 0.77964 0.76797 0.79082 1.17360 1.20438 1.20455 1.20376 1.02220 0.92615 0.99149 0.92039 0.92381 0.88340 0.89201 0.92301 0.87758 0.92144 0.81546 0.80798 0.83643 0.75323 0.99187 0.99193 0.92187 0.86789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.05 9.17 71.98 0.66 -1.39 16 2 C 0.06 0.93 2.84 30.59 0.09 1.02 16 3 C -0.15 -1.74 9.56 71.98 0.69 -1.05 16 4 O -0.33 -8.06 9.80 -92.60 -0.91 -8.96 16 5 C 0.12 3.15 6.59 22.47 0.15 3.29 16 6 C -0.18 -3.29 8.24 22.42 0.18 -3.10 16 7 C -0.07 -1.31 10.03 22.22 0.22 -1.09 16 8 C -0.12 -3.13 9.54 22.53 0.21 -2.92 16 9 C -0.10 -3.63 5.87 -20.10 -0.12 -3.74 16 10 C 0.54 24.42 7.77 86.79 0.67 25.10 16 11 O -0.60 -33.06 16.35 -3.87 -0.06 -33.12 16 12 N -0.69 -31.50 5.50 -469.70 -2.58 -34.08 16 13 C 0.26 15.03 5.43 85.63 0.46 15.49 16 14 C -0.56 -30.61 9.28 25.60 0.24 -30.38 16 15 H 0.09 4.28 7.60 -2.91 -0.02 4.26 16 16 C 0.00 0.14 5.46 84.65 0.46 0.61 16 17 N -0.93 -56.91 13.29 21.45 0.28 -56.62 16 18 Si 0.99 42.42 29.54 68.60 2.03 44.45 16 19 H -0.25 -9.82 7.11 99.48 0.71 -9.11 16 20 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 21 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 22 C -0.12 -4.19 9.53 22.63 0.22 -3.98 16 23 H 0.06 0.75 6.90 -2.39 -0.02 0.74 16 24 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.09 1.00 6.31 -2.39 -0.02 0.98 16 27 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.10 0.62 8.14 -2.38 -0.02 0.61 16 29 H 0.06 0.79 8.14 -2.39 -0.02 0.78 16 30 H 0.17 1.87 5.40 -2.91 -0.02 1.85 16 31 H 0.17 1.66 8.06 -2.91 -0.02 1.64 16 32 H 0.15 3.16 6.40 -2.91 -0.02 3.14 16 33 H 0.41 15.12 6.35 -92.71 -0.59 14.53 16 34 H -0.01 -0.63 8.14 -2.38 -0.02 -0.65 16 35 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 36 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 37 H 0.11 4.38 7.65 -2.91 -0.02 4.35 16 Total: -1.00 -76.93 315.07 3.39 -73.53 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: 0.49 Total: 16.94 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: 4.14 Total: -2.14 kcal Atomic # 7 Polarization: -88.41 SS G_CDS: -2.30 Total: -90.71 kcal Atomic # 8 Polarization: -41.11 SS G_CDS: -0.97 Total: -42.08 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Total: -76.93 3.39 -73.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061666441.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.187 kcal (2) G-P(sol) polarization free energy of solvation -76.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds