Wall clock time and date at job start Mon Mar 30 2020 06:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47051 * 2 1 4 4 N 1.46898 * 109.47254 * 179.97438 * 3 2 1 5 5 C 1.46900 * 110.99609 * 180.02562 * 4 3 2 6 6 H 1.09000 * 110.86776 * 322.71466 * 5 4 3 7 7 C 1.54703 * 110.94196 * 86.45554 * 5 4 3 8 8 O 1.43766 * 102.80687 * 92.76547 * 7 5 4 9 9 C 1.36141 * 109.28673 * 27.59462 * 8 7 5 10 10 C 1.39156 * 129.81943 * 161.39894 * 9 8 7 11 11 C 1.38561 * 120.18759 * 179.66381 * 10 9 8 12 12 O 1.35753 * 119.89535 * 179.97438 * 11 10 9 13 13 C 1.34827 * 117.00048 * 354.44860 * 12 11 10 14 14 H 1.08000 * 120.00109 * 5.05917 * 13 12 11 15 15 C 1.38656 * 120.00207 * 185.05495 * 13 12 11 16 16 N 1.31558 * 119.99718 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 120.00128 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47472 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47074 * 120.00057 * 17 15 13 20 20 H 1.48502 * 109.47185 * 239.99775 * 17 15 13 21 21 C 1.38930 * 120.20723 * 0.02562 * 11 10 9 22 22 C 1.38204 * 119.70104 * 0.14097 * 21 11 10 23 23 C 1.37831 * 120.06066 * 0.02562 * 22 21 11 24 24 H 1.09001 * 109.46519 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47580 * 299.99411 * 1 2 3 26 26 H 1.08999 * 109.47009 * 60.00492 * 1 2 3 27 27 H 1.08996 * 109.47407 * 240.00062 * 2 1 3 28 28 H 1.09001 * 109.47592 * 119.99990 * 2 1 3 29 29 H 1.09006 * 109.46973 * 59.99903 * 3 2 1 30 30 H 1.09001 * 109.46914 * 300.00405 * 3 2 1 31 31 H 1.00899 * 111.00109 * 303.95689 * 4 3 2 32 32 H 1.08990 * 110.74624 * 334.43443 * 7 5 4 33 33 H 1.08998 * 110.74349 * 211.08581 * 7 5 4 34 34 H 1.07998 * 119.90261 * 359.65756 * 10 9 8 35 35 H 0.97004 * 119.99871 * 179.97438 * 16 15 13 36 36 H 1.08007 * 120.15412 * 180.16007 * 21 11 10 37 37 H 1.07998 * 119.97317 * 179.97438 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4426 0.0006 5 6 4.0353 2.8141 0.0013 6 1 3.4181 3.4671 -0.6158 7 6 4.1494 3.3619 1.4435 8 8 5.5017 3.0324 1.8035 9 6 6.2666 2.9806 0.6785 10 6 7.6494 3.0457 0.5373 11 6 8.2260 2.9652 -0.7201 12 8 9.5756 3.0300 -0.8510 13 6 10.2872 3.2877 0.2648 14 1 9.7885 3.3509 1.2207 15 6 11.6592 3.4715 0.1851 16 7 12.2667 3.3940 -0.9792 17 14 12.6451 3.8279 1.7312 18 1 11.7335 3.8617 2.9029 19 1 13.6619 2.7634 1.9262 20 1 13.3239 5.1415 1.5935 21 6 7.4271 2.8194 -1.8474 22 6 6.0533 2.7579 -1.7097 23 6 5.4803 2.8415 -0.4590 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 3.8703 0.9166 0.7822 32 1 3.4413 2.8614 2.1038 33 1 3.9977 4.4411 1.4597 34 1 8.2750 3.1596 1.4102 35 1 13.2265 3.5229 -1.0350 36 1 7.8775 2.7541 -2.8268 37 1 5.4280 2.6450 -2.5831 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062805160.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:05 Heat of formation + Delta-G solvation = -57.170219 kcal Electronic energy + Delta-G solvation = -19262.254843 eV Core-core repulsion = 16197.695034 eV Total energy + Delta-G solvation = -3064.559809 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.14835 -40.19214 -37.46791 -37.18010 -34.36542 -34.02089 -31.34579 -30.67223 -28.96593 -27.37927 -25.86373 -23.91876 -23.00437 -22.41617 -21.91633 -20.01131 -19.11794 -17.55428 -17.34711 -17.14847 -16.62255 -16.22571 -15.77361 -15.57791 -15.38309 -15.23839 -14.78600 -14.65793 -14.10738 -13.97534 -13.50941 -13.25670 -13.07115 -12.91407 -12.72848 -12.66237 -12.41255 -12.17161 -12.11083 -11.77009 -11.73292 -11.53221 -11.33146 -10.78202 -9.53028 -9.36803 -8.85961 -8.50264 -6.19087 0.52164 0.57294 1.34271 1.42016 1.52582 2.15039 2.31473 2.68962 3.03935 3.30690 3.44884 3.59793 3.64642 4.02551 4.08297 4.21638 4.26274 4.39388 4.42962 4.46085 4.57007 4.67530 4.72142 4.83506 4.85305 4.92197 5.01813 5.11350 5.23679 5.33500 5.40327 5.44059 5.57850 5.62264 5.75019 5.99459 6.03184 6.32208 6.35018 6.94237 7.70841 8.72514 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.039237 B = 0.003908 C = 0.003718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.432414 B = 7162.925691 C = 7529.379679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.122 4.122 3 C 0.058 3.942 4 N -0.685 5.685 5 C 0.124 3.876 6 H 0.120 0.880 7 C 0.017 3.983 8 O -0.324 6.324 9 C 0.140 3.860 10 C -0.271 4.271 11 C 0.154 3.846 12 O -0.220 6.220 13 C -0.417 4.417 14 H 0.097 0.903 15 C -0.018 4.018 16 N -0.916 5.916 17 Si 1.018 2.982 18 H -0.256 1.256 19 H -0.265 1.265 20 H -0.265 1.265 21 C -0.226 4.226 22 C -0.001 4.001 23 C -0.236 4.236 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.042 0.958 30 H 0.078 0.922 31 H 0.342 0.658 32 H 0.124 0.876 33 H 0.093 0.907 34 H 0.114 0.886 35 H 0.275 0.725 36 H 0.126 0.874 37 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.898 -1.995 3.827 22.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.160 4.160 3 C -0.070 4.070 4 N -0.316 5.316 5 C 0.014 3.986 6 H 0.138 0.862 7 C -0.060 4.060 8 O -0.239 6.239 9 C 0.095 3.905 10 C -0.291 4.291 11 C 0.103 3.897 12 O -0.126 6.126 13 C -0.493 4.493 14 H 0.115 0.885 15 C -0.216 4.216 16 N -0.553 5.553 17 Si 0.837 3.163 18 H -0.180 1.180 19 H -0.190 1.190 20 H -0.190 1.190 21 C -0.245 4.245 22 C -0.020 4.020 23 C -0.239 4.239 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.060 0.940 30 H 0.097 0.903 31 H 0.160 0.840 32 H 0.142 0.858 33 H 0.111 0.889 34 H 0.132 0.868 35 H 0.084 0.916 36 H 0.144 0.856 37 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -21.478 -2.125 3.096 21.804 hybrid contribution 0.803 0.359 1.382 1.638 sum -20.675 -1.766 4.478 21.228 Atomic orbital electron populations 1.21698 0.94308 1.02210 1.02255 1.21487 0.96521 0.95865 1.02147 1.22135 0.85758 0.97750 1.01346 1.60415 1.08571 1.12039 1.50548 1.21459 0.91795 0.90971 0.94399 0.86180 1.24797 0.80920 1.02651 0.97601 1.86769 1.21796 1.85769 1.29556 1.19239 0.91008 0.94033 0.86260 1.20118 0.92590 1.18668 0.97721 1.19390 0.84277 0.92512 0.93560 1.83979 1.13394 1.79092 1.36114 1.21829 0.90491 1.50803 0.86204 0.88526 1.26559 0.96617 0.95885 1.02532 1.70176 1.10927 1.47859 1.26352 0.84545 0.77667 0.78646 0.75438 1.17988 1.19028 1.18955 1.20397 0.93415 1.14167 0.96565 1.20103 0.92087 0.93081 0.96699 1.20521 0.95509 1.14723 0.93104 0.92219 0.92229 0.92234 0.92138 0.92357 0.93965 0.90333 0.83957 0.85827 0.88853 0.86812 0.91613 0.85601 0.82795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.91 71.98 0.71 -0.88 16 2 C -0.12 -1.74 6.19 30.60 0.19 -1.55 16 3 C 0.06 0.88 5.55 86.30 0.48 1.36 16 4 N -0.69 -14.72 6.32 -490.81 -3.10 -17.82 16 5 C 0.12 2.90 3.40 45.06 0.15 3.05 16 6 H 0.12 2.28 7.92 -2.39 -0.02 2.26 16 7 C 0.02 0.37 7.45 72.56 0.54 0.91 16 8 O -0.32 -11.13 11.10 -95.16 -1.06 -12.19 16 9 C 0.14 5.57 7.03 22.67 0.16 5.73 16 10 C -0.27 -13.00 9.19 22.57 0.21 -12.79 16 11 C 0.15 7.94 6.64 22.51 0.15 8.09 16 12 O -0.22 -13.47 9.75 -22.74 -0.22 -13.69 16 13 C -0.42 -24.96 9.48 67.92 0.64 -24.32 16 14 H 0.10 5.46 5.19 -2.91 -0.02 5.45 16 15 C -0.02 -1.02 5.49 84.83 0.47 -0.56 16 16 N -0.92 -56.39 13.67 21.61 0.30 -56.09 16 17 Si 1.02 43.74 29.55 68.60 2.03 45.76 16 18 H -0.26 -10.41 7.11 99.48 0.71 -9.71 16 19 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 20 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 21 C -0.23 -9.77 10.01 22.43 0.22 -9.54 16 22 C 0.00 -0.05 10.03 22.17 0.22 0.18 16 23 C -0.24 -7.94 5.94 -19.47 -0.12 -8.05 16 24 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 25 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.04 0.53 7.85 -2.38 -0.02 0.51 16 30 H 0.08 1.12 8.09 -2.39 -0.02 1.10 16 31 H 0.34 7.79 8.52 -89.69 -0.76 7.03 16 32 H 0.12 2.06 7.81 -2.39 -0.02 2.04 16 33 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.11 5.73 5.60 -2.91 -0.02 5.71 16 35 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 36 H 0.13 5.24 8.06 -2.91 -0.02 5.21 16 37 H 0.15 4.15 8.06 -2.91 -0.02 4.13 16 Total: -1.00 -71.25 312.28 2.29 -68.96 By element: Atomic # 1 Polarization: 23.13 SS G_CDS: 0.32 Total: 23.44 kcal Atomic # 6 Polarization: -42.41 SS G_CDS: 4.03 Total: -38.38 kcal Atomic # 7 Polarization: -71.11 SS G_CDS: -2.81 Total: -73.91 kcal Atomic # 8 Polarization: -24.60 SS G_CDS: -1.28 Total: -25.88 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Total: -71.25 2.29 -68.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062805160.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.788 kcal (2) G-P(sol) polarization free energy of solvation -71.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds