Wall clock time and date at job start Mon Mar 30 2020 06:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47195 * 2 1 4 4 C 1.50695 * 109.47286 * 119.99966 * 2 1 3 5 5 H 1.08002 * 120.00283 * 120.00106 * 4 2 1 6 6 C 1.37878 * 120.00153 * 300.00115 * 4 2 1 7 7 N 1.31513 * 119.99526 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00167 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47273 * 90.00216 * 8 6 4 10 10 H 1.48494 * 109.47070 * 209.99743 * 8 6 4 11 11 H 1.48496 * 109.46959 * 330.00063 * 8 6 4 12 12 N 1.46905 * 109.47326 * 240.00089 * 2 1 3 13 13 C 1.46893 * 110.99954 * 190.66657 * 12 2 1 14 14 C 1.46901 * 110.99737 * 66.71296 * 12 2 1 15 15 H 1.08995 * 109.47192 * 47.82858 * 14 12 2 16 16 C 1.50701 * 109.47181 * 287.82149 * 14 12 2 17 17 O 1.20827 * 119.99984 * 325.41988 * 16 14 12 18 18 O 1.34229 * 119.99757 * 145.40848 * 16 14 12 19 19 C 1.50705 * 109.46900 * 167.82744 * 14 12 2 20 20 C 1.38237 * 119.99913 * 48.35753 * 19 14 12 21 21 C 1.38235 * 120.00005 * 180.02562 * 20 19 14 22 22 C 1.38242 * 119.99916 * 0.07316 * 21 20 19 23 23 C 1.38233 * 119.99697 * 359.97438 * 22 21 20 24 24 C 1.38231 * 120.00205 * 228.49165 * 19 14 12 25 25 H 1.09007 * 109.46777 * 170.32340 * 1 2 3 26 26 H 1.08997 * 109.47285 * 290.32014 * 1 2 3 27 27 H 1.09000 * 109.47721 * 50.32665 * 1 2 3 28 28 H 0.97008 * 119.99905 * 180.02562 * 7 6 4 29 29 H 1.08996 * 109.47394 * 293.67534 * 13 12 2 30 30 H 1.09001 * 109.47251 * 53.67970 * 13 12 2 31 31 H 1.09003 * 109.47094 * 173.67594 * 13 12 2 32 32 H 0.96702 * 117.00318 * 180.02562 * 18 16 14 33 33 H 1.08004 * 120.00161 * 0.11078 * 20 19 14 34 34 H 1.07994 * 120.00374 * 180.34088 * 21 20 19 35 35 H 1.07997 * 119.99691 * 179.97438 * 22 21 20 36 36 H 1.07999 * 119.99574 * 179.97438 * 23 22 21 37 37 H 1.08009 * 119.99408 * 359.97373 * 24 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9427 0.8296 2.6033 8 14 2.3214 -1.1203 4.0079 9 1 3.6296 -0.5458 4.4124 10 1 1.3432 -0.9492 5.1119 11 1 2.4858 -2.5661 3.7119 12 7 2.0197 -0.6925 -1.1995 13 6 3.4657 -0.9358 -1.1133 14 6 1.6840 0.0600 -2.4157 15 1 1.9536 1.1074 -2.2809 16 6 0.2044 -0.0478 -2.6807 17 8 -0.3849 -1.0676 -2.4112 18 8 -0.4588 0.9891 -3.2161 19 6 2.4464 -0.5086 -3.5846 20 6 2.4578 -1.8734 -3.8045 21 6 3.1575 -2.3950 -4.8764 22 6 3.8473 -1.5520 -5.7277 23 6 3.8367 -0.1874 -5.5072 24 6 3.1367 0.3342 -4.4355 25 1 -0.3633 -1.0131 -0.1728 26 1 -0.3634 0.3569 0.9637 27 1 -0.3634 0.6560 -0.7910 28 1 0.7086 1.1613 3.4844 29 1 3.9963 0.0161 -1.1339 30 1 3.6916 -1.4576 -0.1833 31 1 3.7824 -1.5466 -1.9587 32 1 -1.4068 0.8730 -3.3675 33 1 1.9187 -2.5320 -3.1395 34 1 3.1619 -3.4607 -5.0514 35 1 4.3943 -1.9596 -6.5649 36 1 4.3759 0.4711 -6.1721 37 1 3.1293 1.4003 -4.2626 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063087155.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:39 Heat of formation + Delta-G solvation = -44.287562 kcal Electronic energy + Delta-G solvation = -20535.875148 eV Core-core repulsion = 17471.873973 eV Total energy + Delta-G solvation = -3064.001175 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.37324 -38.83945 -36.76645 -35.41282 -33.27404 -31.34154 -30.77654 -28.95945 -27.81158 -24.98608 -23.64106 -22.47820 -22.32920 -20.69219 -19.23568 -17.63344 -16.90150 -16.52254 -15.91069 -15.61352 -15.09528 -14.67048 -14.45305 -13.79175 -13.45979 -13.34241 -13.17449 -12.61301 -12.55600 -12.35459 -11.94614 -11.66242 -11.27742 -11.15987 -10.95296 -10.86954 -10.73113 -10.56853 -10.26689 -10.05789 -9.92238 -9.71851 -8.94550 -8.76580 -8.56025 -8.43894 -7.36315 -6.04938 -4.10881 1.38801 1.53884 2.79243 3.28870 3.35732 3.38514 3.41018 3.91994 4.38010 4.83385 4.91299 5.08933 5.11474 5.27448 5.27988 5.58860 5.62617 5.75639 5.80533 6.04511 6.13466 6.21705 6.33505 6.53552 6.63108 6.68363 6.74964 6.79580 6.92835 7.06722 7.10750 7.11495 7.39242 7.61800 7.77097 8.10226 8.21575 8.42688 8.51942 8.94100 9.53991 11.01399 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.024773 B = 0.006309 C = 0.005525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.010101 B = 4437.114312 C = 5066.319158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.209 3.791 3 H 0.002 0.998 4 C -0.506 4.506 5 H 0.068 0.932 6 C 0.059 3.941 7 N -0.891 5.891 8 Si 0.899 3.101 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.273 1.273 12 N -0.515 5.515 13 C 0.034 3.966 14 C 0.135 3.865 15 H 0.069 0.931 16 C 0.495 3.505 17 O -0.489 6.489 18 O -0.526 6.526 19 C -0.078 4.078 20 C -0.081 4.081 21 C -0.128 4.128 22 C -0.120 4.120 23 C -0.127 4.127 24 C -0.106 4.106 25 H 0.048 0.952 26 H 0.088 0.912 27 H -0.001 1.001 28 H 0.261 0.739 29 H 0.014 0.986 30 H 0.088 0.912 31 H 0.052 0.948 32 H 0.403 0.597 33 H 0.137 0.863 34 H 0.121 0.879 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.445 -0.903 -14.412 14.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.103 3.897 3 H 0.020 0.980 4 C -0.544 4.544 5 H 0.086 0.914 6 C -0.142 4.142 7 N -0.530 5.530 8 Si 0.727 3.273 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.198 1.198 12 N -0.241 5.241 13 C -0.113 4.113 14 C 0.025 3.975 15 H 0.086 0.914 16 C 0.335 3.665 17 O -0.374 6.374 18 O -0.338 6.338 19 C -0.078 4.078 20 C -0.099 4.099 21 C -0.146 4.146 22 C -0.138 4.138 23 C -0.145 4.145 24 C -0.124 4.124 25 H 0.067 0.933 26 H 0.106 0.894 27 H 0.017 0.983 28 H 0.071 0.929 29 H 0.033 0.967 30 H 0.107 0.893 31 H 0.071 0.929 32 H 0.261 0.739 33 H 0.155 0.845 34 H 0.139 0.861 35 H 0.136 0.864 36 H 0.138 0.862 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 3.371 -1.484 -14.123 14.595 hybrid contribution -0.020 0.444 0.886 0.991 sum 3.351 -1.040 -13.238 13.695 Atomic orbital electron populations 1.22100 0.97521 0.98878 1.00901 1.19412 0.92603 0.92107 0.85538 0.98005 1.21154 1.31261 1.12518 0.89487 0.91403 1.24942 0.95078 0.95093 0.99098 1.69898 1.36540 1.23001 1.23556 0.86480 0.78418 0.80097 0.82346 1.20738 1.21217 1.19752 1.62044 1.14568 1.46980 1.00516 1.22379 0.86839 0.99445 1.02641 1.19943 0.87209 0.98249 0.92081 0.91379 1.22910 0.90297 0.80506 0.72746 1.90674 1.69045 1.31131 1.46557 1.84534 1.28041 1.44706 1.76520 1.19481 0.98691 0.94208 0.95425 1.21242 0.97325 0.94889 0.96483 1.21167 0.98295 0.99774 0.95395 1.21141 0.99532 0.93725 0.99398 1.21028 1.00164 0.95351 0.97989 1.21070 0.97026 0.99638 0.94706 0.93267 0.89384 0.98253 0.92880 0.96706 0.89345 0.92903 0.73944 0.84525 0.86081 0.86380 0.86166 0.85943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.49 7.56 37.16 0.28 -3.20 16 2 C 0.21 5.32 2.08 -68.87 -0.14 5.18 16 3 H 0.00 0.07 7.97 -51.93 -0.41 -0.35 16 4 C -0.51 -13.75 7.87 -34.44 -0.27 -14.02 16 5 H 0.07 1.81 5.94 -52.49 -0.31 1.50 16 6 C 0.06 1.63 5.27 -17.82 -0.09 1.54 16 7 N -0.89 -25.37 11.30 55.43 0.63 -24.74 16 8 Si 0.90 21.22 29.54 -169.99 -5.02 16.19 16 9 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 10 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 12 N -0.51 -11.20 4.01 -231.09 -0.93 -12.12 16 13 C 0.03 0.68 8.56 60.06 0.51 1.19 16 14 C 0.14 2.57 2.23 -70.01 -0.16 2.41 16 15 H 0.07 1.29 7.71 -51.93 -0.40 0.89 16 16 C 0.49 9.50 4.25 36.01 0.15 9.65 16 17 O -0.49 -10.58 15.34 -18.75 -0.29 -10.87 16 18 O -0.53 -8.31 13.26 -39.25 -0.52 -8.83 16 19 C -0.08 -1.25 3.54 -104.62 -0.37 -1.62 16 20 C -0.08 -1.27 7.53 -39.58 -0.30 -1.56 16 21 C -0.13 -1.64 10.05 -39.58 -0.40 -2.04 16 22 C -0.12 -1.37 10.05 -39.58 -0.40 -1.77 16 23 C -0.13 -1.50 10.05 -39.59 -0.40 -1.89 16 24 C -0.11 -1.45 9.67 -39.59 -0.38 -1.84 16 25 H 0.05 1.30 6.97 -51.92 -0.36 0.94 16 26 H 0.09 2.45 5.87 -51.93 -0.30 2.15 16 27 H 0.00 -0.03 5.53 -51.93 -0.29 -0.32 16 28 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 29 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.09 1.85 5.65 -51.93 -0.29 1.55 16 31 H 0.05 0.92 5.61 -51.93 -0.29 0.63 16 32 H 0.40 4.51 9.10 45.56 0.41 4.93 16 33 H 0.14 2.37 7.97 -52.48 -0.42 1.95 16 34 H 0.12 1.29 8.06 -52.49 -0.42 0.86 16 35 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 36 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 37 H 0.12 1.51 7.98 -52.48 -0.42 1.09 16 LS Contribution 300.38 15.07 4.53 4.53 Total: -1.00 -31.09 300.38 -7.48 -38.57 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -3.91 Total: 5.26 kcal Atomic # 6 Polarization: -6.02 SS G_CDS: -1.96 Total: -7.98 kcal Atomic # 7 Polarization: -36.57 SS G_CDS: -0.30 Total: -36.86 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -0.81 Total: -19.70 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.09 -7.48 -38.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063087155.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.720 kcal (2) G-P(sol) polarization free energy of solvation -31.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds