Wall clock time and date at job start Mon Mar 30 2020 06:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47195 * 2 1 4 4 C 1.50695 * 109.47286 * 119.99966 * 2 1 3 5 5 H 1.08002 * 120.00283 * 120.00106 * 4 2 1 6 6 C 1.37878 * 120.00153 * 300.00115 * 4 2 1 7 7 N 1.31513 * 119.99526 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00167 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47273 * 90.00216 * 8 6 4 10 10 H 1.48494 * 109.47070 * 209.99743 * 8 6 4 11 11 H 1.48496 * 109.46959 * 330.00063 * 8 6 4 12 12 N 1.46905 * 109.47326 * 240.00089 * 2 1 3 13 13 C 1.46893 * 110.99954 * 190.66657 * 12 2 1 14 14 C 1.46901 * 110.99737 * 66.71296 * 12 2 1 15 15 H 1.08995 * 109.47192 * 47.82858 * 14 12 2 16 16 C 1.50701 * 109.47181 * 287.82149 * 14 12 2 17 17 O 1.20827 * 119.99984 * 325.41988 * 16 14 12 18 18 O 1.34229 * 119.99757 * 145.40848 * 16 14 12 19 19 C 1.50705 * 109.46900 * 167.82744 * 14 12 2 20 20 C 1.38237 * 119.99913 * 48.35753 * 19 14 12 21 21 C 1.38235 * 120.00005 * 180.02562 * 20 19 14 22 22 C 1.38242 * 119.99916 * 0.07316 * 21 20 19 23 23 C 1.38233 * 119.99697 * 359.97438 * 22 21 20 24 24 C 1.38231 * 120.00205 * 228.49165 * 19 14 12 25 25 H 1.09007 * 109.46777 * 170.32340 * 1 2 3 26 26 H 1.08997 * 109.47285 * 290.32014 * 1 2 3 27 27 H 1.09000 * 109.47721 * 50.32665 * 1 2 3 28 28 H 0.97008 * 119.99905 * 180.02562 * 7 6 4 29 29 H 1.08996 * 109.47394 * 293.67534 * 13 12 2 30 30 H 1.09001 * 109.47251 * 53.67970 * 13 12 2 31 31 H 1.09003 * 109.47094 * 173.67594 * 13 12 2 32 32 H 0.96702 * 117.00318 * 180.02562 * 18 16 14 33 33 H 1.08004 * 120.00161 * 0.11078 * 20 19 14 34 34 H 1.07994 * 120.00374 * 180.34088 * 21 20 19 35 35 H 1.07997 * 119.99691 * 179.97438 * 22 21 20 36 36 H 1.07999 * 119.99574 * 179.97438 * 23 22 21 37 37 H 1.08009 * 119.99408 * 359.97373 * 24 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9427 0.8296 2.6033 8 14 2.3214 -1.1203 4.0079 9 1 3.6296 -0.5458 4.4124 10 1 1.3432 -0.9492 5.1119 11 1 2.4858 -2.5661 3.7119 12 7 2.0197 -0.6925 -1.1995 13 6 3.4657 -0.9358 -1.1133 14 6 1.6840 0.0600 -2.4157 15 1 1.9536 1.1074 -2.2809 16 6 0.2044 -0.0478 -2.6807 17 8 -0.3849 -1.0676 -2.4112 18 8 -0.4588 0.9891 -3.2161 19 6 2.4464 -0.5086 -3.5846 20 6 2.4578 -1.8734 -3.8045 21 6 3.1575 -2.3950 -4.8764 22 6 3.8473 -1.5520 -5.7277 23 6 3.8367 -0.1874 -5.5072 24 6 3.1367 0.3342 -4.4355 25 1 -0.3633 -1.0131 -0.1728 26 1 -0.3634 0.3569 0.9637 27 1 -0.3634 0.6560 -0.7910 28 1 0.7086 1.1613 3.4844 29 1 3.9963 0.0161 -1.1339 30 1 3.6916 -1.4576 -0.1833 31 1 3.7824 -1.5466 -1.9587 32 1 -1.4068 0.8730 -3.3675 33 1 1.9187 -2.5320 -3.1395 34 1 3.1619 -3.4607 -5.0514 35 1 4.3943 -1.9596 -6.5649 36 1 4.3759 0.4711 -6.1721 37 1 3.1293 1.4003 -4.2626 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063087155.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:39 Heat of formation + Delta-G solvation = -64.674096 kcal Electronic energy + Delta-G solvation = -20536.759174 eV Core-core repulsion = 17471.873973 eV Total energy + Delta-G solvation = -3064.885202 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.81956 -40.03157 -38.36367 -36.91549 -35.12835 -32.85669 -31.82665 -30.79062 -29.25110 -27.01983 -25.32895 -23.61800 -23.51478 -22.31292 -20.82364 -19.11759 -18.53286 -18.06006 -17.42791 -17.09899 -16.60958 -16.13764 -15.77529 -15.24588 -15.07778 -14.96218 -14.32819 -14.13304 -14.02510 -13.72758 -13.54007 -13.33969 -12.99192 -12.76347 -12.66705 -12.40501 -12.24029 -12.09807 -11.92733 -11.91488 -11.80568 -11.35687 -10.94441 -10.53150 -9.79503 -9.66279 -9.11430 -8.14925 -6.27937 0.33194 0.52463 1.28707 1.41557 1.43282 1.53836 2.03735 2.40386 2.84328 3.13256 3.35417 3.63682 3.94967 4.19607 4.25320 4.33522 4.36366 4.51067 4.63310 4.65932 4.73398 4.76256 4.92507 5.01380 5.03859 5.18835 5.19813 5.36936 5.55301 5.59390 5.61621 5.63588 5.70769 5.75058 6.11101 6.13967 6.23878 6.52023 6.84313 7.08553 7.40964 8.91238 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.024773 B = 0.006309 C = 0.005525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.010101 B = 4437.114312 C = 5066.319158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.214 3.786 3 H -0.028 1.028 4 C -0.522 4.522 5 H 0.068 0.932 6 C 0.011 3.989 7 N -0.920 5.920 8 Si 0.964 3.036 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.269 1.269 12 N -0.523 5.523 13 C 0.043 3.957 14 C 0.133 3.867 15 H 0.065 0.935 16 C 0.495 3.505 17 O -0.521 6.521 18 O -0.517 6.517 19 C -0.098 4.098 20 C -0.101 4.101 21 C -0.128 4.128 22 C -0.110 4.110 23 C -0.120 4.120 24 C -0.113 4.113 25 H 0.034 0.966 26 H 0.063 0.937 27 H 0.012 0.988 28 H 0.263 0.737 29 H 0.015 0.985 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.423 0.577 33 H 0.109 0.891 34 H 0.142 0.858 35 H 0.155 0.845 36 H 0.154 0.846 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.991 -1.289 -16.292 17.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.108 3.892 3 H -0.010 1.010 4 C -0.560 4.560 5 H 0.086 0.914 6 C -0.188 4.188 7 N -0.559 5.559 8 Si 0.789 3.211 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.193 1.193 12 N -0.249 5.249 13 C -0.104 4.104 14 C 0.023 3.977 15 H 0.082 0.918 16 C 0.337 3.663 17 O -0.408 6.408 18 O -0.331 6.331 19 C -0.098 4.098 20 C -0.120 4.120 21 C -0.146 4.146 22 C -0.128 4.128 23 C -0.138 4.138 24 C -0.131 4.131 25 H 0.053 0.947 26 H 0.081 0.919 27 H 0.031 0.969 28 H 0.072 0.928 29 H 0.033 0.967 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.285 0.715 33 H 0.127 0.873 34 H 0.160 0.840 35 H 0.172 0.828 36 H 0.172 0.828 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 4.912 -1.858 -16.030 16.869 hybrid contribution -0.509 0.602 1.316 1.534 sum 4.403 -1.256 -14.715 15.411 Atomic orbital electron populations 1.21858 0.97844 0.98028 0.99859 1.19176 0.92279 0.90659 0.87105 1.01036 1.21454 1.31406 1.12654 0.90511 0.91400 1.25754 0.95194 0.95760 1.02049 1.70023 1.37441 1.24231 1.24230 0.85456 0.78054 0.79024 0.78520 1.19787 1.21001 1.19308 1.61883 1.15707 1.47008 1.00308 1.22308 0.85794 0.99598 1.02748 1.19994 0.87774 0.97819 0.92111 0.91760 1.23044 0.90580 0.80463 0.72190 1.90659 1.69689 1.32342 1.48131 1.84480 1.29787 1.43180 1.75626 1.19324 1.00242 0.94792 0.95447 1.21103 0.98775 0.94393 0.97708 1.21420 0.97485 1.01230 0.94433 1.21579 0.98259 0.93456 0.99489 1.21433 0.98975 0.96145 0.97207 1.21256 0.96909 0.99962 0.94974 0.94658 0.91863 0.96924 0.92810 0.96651 0.90964 0.90584 0.71537 0.87271 0.84035 0.82771 0.82837 0.85016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.25 7.56 71.98 0.54 -5.71 16 2 C 0.21 11.31 2.08 44.16 0.09 11.40 16 3 H -0.03 -1.60 7.97 -2.39 -0.02 -1.62 16 4 C -0.52 -29.07 7.87 25.60 0.20 -28.87 16 5 H 0.07 3.70 5.94 -2.91 -0.02 3.69 16 6 C 0.01 0.63 5.27 84.66 0.45 1.07 16 7 N -0.92 -53.54 11.30 21.45 0.24 -53.30 16 8 Si 0.96 43.92 29.54 68.60 2.03 45.95 16 9 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 10 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 11 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 12 N -0.52 -23.37 4.01 -885.04 -3.54 -26.91 16 13 C 0.04 1.70 8.56 127.69 1.09 2.79 16 14 C 0.13 5.12 2.23 43.42 0.10 5.21 16 15 H 0.06 2.49 7.71 -2.39 -0.02 2.47 16 16 C 0.50 19.23 4.25 71.24 0.30 19.53 16 17 O -0.52 -23.06 15.34 21.96 0.34 -22.72 16 18 O -0.52 -16.05 13.26 -51.41 -0.68 -16.73 16 19 C -0.10 -3.08 3.54 -19.86 -0.07 -3.15 16 20 C -0.10 -3.10 7.53 22.27 0.17 -2.93 16 21 C -0.13 -2.94 10.05 22.27 0.22 -2.72 16 22 C -0.11 -2.05 10.05 22.27 0.22 -1.82 16 23 C -0.12 -2.33 10.05 22.27 0.22 -2.11 16 24 C -0.11 -2.85 9.67 22.27 0.22 -2.63 16 25 H 0.03 1.92 6.97 -2.38 -0.02 1.90 16 26 H 0.06 3.65 5.87 -2.39 -0.01 3.64 16 27 H 0.01 0.59 5.53 -2.39 -0.01 0.58 16 28 H 0.26 14.50 8.31 -92.70 -0.77 13.73 16 29 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.07 3.08 5.65 -2.39 -0.01 3.06 16 31 H 0.08 2.65 5.61 -2.39 -0.01 2.64 16 32 H 0.42 9.09 9.10 -74.06 -0.67 8.41 16 33 H 0.11 3.90 7.97 -2.91 -0.02 3.87 16 34 H 0.14 2.60 8.06 -2.91 -0.02 2.58 16 35 H 0.15 1.80 8.06 -2.91 -0.02 1.78 16 36 H 0.15 1.98 8.06 -2.91 -0.02 1.96 16 37 H 0.13 3.00 7.98 -2.91 -0.02 2.98 16 Total: -1.00 -68.51 300.38 2.55 -65.96 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: 0.41 Total: 17.68 kcal Atomic # 6 Polarization: -13.69 SS G_CDS: 3.76 Total: -9.93 kcal Atomic # 7 Polarization: -76.91 SS G_CDS: -3.30 Total: -80.22 kcal Atomic # 8 Polarization: -39.11 SS G_CDS: -0.34 Total: -39.45 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -68.51 2.55 -65.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063087155.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.286 kcal (2) G-P(sol) polarization free energy of solvation -68.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds