Wall clock time and date at job start Mon Mar 30 2020 06:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.46407 * 2 1 4 4 C 1.50693 * 109.47072 * 239.99832 * 2 1 3 5 5 H 1.07997 * 120.00352 * 268.05100 * 4 2 1 6 6 C 1.37878 * 120.00084 * 88.33337 * 4 2 1 7 7 N 1.31516 * 120.00538 * 184.58102 * 6 4 2 8 8 Si 1.86802 * 119.99785 * 4.58549 * 6 4 2 9 9 H 1.48499 * 109.47542 * 93.46320 * 8 6 4 10 10 H 1.48502 * 109.47046 * 213.46179 * 8 6 4 11 11 H 1.48497 * 109.47331 * 333.45783 * 8 6 4 12 12 N 1.46896 * 109.47389 * 119.99511 * 2 1 3 13 13 C 1.46899 * 111.00226 * 165.56232 * 12 2 1 14 14 C 1.46904 * 111.00127 * 289.52272 * 12 2 1 15 15 H 1.08995 * 109.46897 * 311.37629 * 14 12 2 16 16 C 1.50700 * 109.47020 * 191.37345 * 14 12 2 17 17 O 1.20827 * 119.99871 * 319.94124 * 16 14 12 18 18 O 1.34228 * 119.99942 * 139.94463 * 16 14 12 19 19 C 1.50701 * 109.46906 * 71.37503 * 14 12 2 20 20 C 1.38237 * 120.00217 * 47.03310 * 19 14 12 21 21 C 1.38235 * 119.99448 * 179.80692 * 20 19 14 22 22 C 1.38232 * 120.00657 * 0.39659 * 21 20 19 23 23 C 1.38238 * 119.99721 * 359.85464 * 22 21 20 24 24 C 1.38236 * 120.00011 * 359.95826 * 23 22 21 25 25 H 1.09006 * 109.47277 * 189.75290 * 1 2 3 26 26 H 1.08998 * 109.47638 * 309.74968 * 1 2 3 27 27 H 1.08997 * 109.47713 * 69.75627 * 1 2 3 28 28 H 0.96997 * 120.00330 * 179.97438 * 7 6 4 29 29 H 1.09001 * 109.46512 * 70.37911 * 13 12 2 30 30 H 1.08999 * 109.47126 * 190.37504 * 13 12 2 31 31 H 1.08989 * 109.47366 * 310.38328 * 13 12 2 32 32 H 0.96707 * 116.99929 * 180.02562 * 18 16 14 33 33 H 1.07994 * 119.99968 * 359.97438 * 20 19 14 34 34 H 1.08004 * 119.99477 * 180.22405 * 21 20 19 35 35 H 1.07995 * 120.00157 * 179.83274 * 22 21 20 36 36 H 1.08001 * 119.99896 * 179.97438 * 23 22 21 37 37 H 1.07998 * 119.99998 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.2423 -1.7692 -1.1948 6 6 2.2293 -0.0076 -2.4001 7 7 2.5809 -0.6419 -3.4972 8 14 1.9971 1.8458 -2.4265 9 1 3.3021 2.5118 -2.1846 10 1 1.4683 2.2595 -3.7511 11 1 1.0361 2.2394 -1.3651 12 7 2.0197 -0.6924 1.1994 13 6 3.4473 -1.0153 1.0749 14 6 1.7631 0.1026 2.4079 15 1 2.0968 1.1275 2.2461 16 6 2.5152 -0.4931 3.5700 17 8 2.5760 -1.6929 3.6991 18 8 3.1174 0.3093 4.4618 19 6 0.2865 0.0966 2.7089 20 6 -0.4188 -1.0921 2.6860 21 6 -1.7724 -1.0980 2.9661 22 6 -2.4225 0.0857 3.2610 23 6 -1.7182 1.2751 3.2788 24 6 -0.3638 1.2806 3.0025 25 1 -0.3634 -1.0129 0.1741 26 1 -0.3634 0.6571 0.7901 27 1 -0.3634 0.3556 -0.9641 28 1 2.7192 -0.1475 -4.3202 29 1 4.0334 -0.0979 1.1301 30 1 3.7408 -1.6831 1.8849 31 1 3.6271 -1.5042 0.1176 32 1 3.5880 -0.1190 5.1901 33 1 0.0883 -2.0164 2.4520 34 1 -2.3227 -2.0272 2.9518 35 1 -3.4806 0.0814 3.4772 36 1 -2.2262 2.2000 3.5088 37 1 0.1865 2.2098 3.0168 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063087156.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:42 Heat of formation + Delta-G solvation = -43.934070 kcal Electronic energy + Delta-G solvation = -20732.393289 eV Core-core repulsion = 17668.407442 eV Total energy + Delta-G solvation = -3063.985847 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.58511 -38.96618 -36.90295 -35.80576 -32.92937 -31.48826 -30.65612 -30.25876 -27.13161 -25.13118 -24.07910 -22.40890 -22.19709 -20.69065 -19.21085 -17.95664 -17.24327 -16.84181 -16.05983 -15.63813 -15.00836 -14.59371 -14.53768 -13.94459 -13.69354 -13.50499 -13.13108 -12.71616 -12.65606 -12.53047 -12.13907 -11.77024 -11.52057 -11.16376 -11.04854 -10.88699 -10.81683 -10.68304 -10.44670 -10.33065 -10.06294 -9.79244 -9.18890 -8.63422 -8.61750 -8.29520 -7.53993 -6.14203 -4.13085 1.47395 1.66762 2.40641 3.12541 3.21875 3.31756 3.33833 4.00066 4.34850 4.65077 4.94915 5.12749 5.18680 5.20602 5.35837 5.42144 5.52818 5.72502 5.86225 6.04076 6.14751 6.23284 6.31257 6.41262 6.58216 6.63913 6.66198 6.68641 6.75854 6.85724 6.90219 7.05271 7.21097 7.28811 7.53793 7.79031 7.90080 8.12938 8.54884 8.93427 9.47905 10.98080 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.018013 B = 0.008261 C = 0.006751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.024417 B = 3388.687741 C = 4146.838524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.183 3.817 3 H 0.004 0.996 4 C -0.508 4.508 5 H 0.084 0.916 6 C 0.075 3.925 7 N -0.894 5.894 8 Si 0.867 3.133 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.260 1.260 12 N -0.507 5.507 13 C 0.019 3.981 14 C 0.132 3.868 15 H 0.069 0.931 16 C 0.488 3.512 17 O -0.493 6.493 18 O -0.520 6.520 19 C -0.065 4.065 20 C -0.069 4.069 21 C -0.128 4.128 22 C -0.119 4.119 23 C -0.128 4.128 24 C -0.110 4.110 25 H 0.054 0.946 26 H 0.034 0.966 27 H 0.044 0.956 28 H 0.265 0.735 29 H 0.011 0.989 30 H 0.055 0.945 31 H 0.103 0.897 32 H 0.405 0.595 33 H 0.136 0.864 34 H 0.120 0.880 35 H 0.117 0.883 36 H 0.119 0.881 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.761 4.143 14.862 16.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.077 3.923 3 H 0.022 0.978 4 C -0.546 4.546 5 H 0.102 0.898 6 C -0.128 4.128 7 N -0.531 5.531 8 Si 0.694 3.306 9 H -0.205 1.205 10 H -0.212 1.212 11 H -0.185 1.185 12 N -0.234 5.234 13 C -0.129 4.129 14 C 0.022 3.978 15 H 0.087 0.913 16 C 0.328 3.672 17 O -0.379 6.379 18 O -0.332 6.332 19 C -0.066 4.066 20 C -0.088 4.088 21 C -0.146 4.146 22 C -0.137 4.137 23 C -0.146 4.146 24 C -0.129 4.129 25 H 0.073 0.927 26 H 0.053 0.947 27 H 0.063 0.937 28 H 0.075 0.925 29 H 0.030 0.970 30 H 0.074 0.926 31 H 0.121 0.879 32 H 0.263 0.737 33 H 0.154 0.846 34 H 0.138 0.862 35 H 0.135 0.865 36 H 0.137 0.863 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -5.153 3.572 14.404 15.709 hybrid contribution 0.711 1.560 0.103 1.718 sum -4.442 5.132 14.507 16.016 Atomic orbital electron populations 1.22307 0.97353 1.00589 0.99345 1.19829 0.92776 0.92203 0.87448 0.97796 1.20872 1.44067 0.97486 0.92158 0.89772 1.24931 0.94517 0.97917 0.95436 1.69885 1.47159 1.35837 1.00261 0.87001 0.78958 0.86800 0.77856 1.20463 1.21156 1.18471 1.62212 1.17728 1.43145 1.00307 1.22541 0.86658 0.99113 1.04546 1.20140 0.91411 0.97349 0.88904 0.91302 1.23346 0.75952 0.85401 0.82455 1.90682 1.57244 1.16308 1.73620 1.84572 1.65258 1.44720 1.38626 1.19242 0.93014 0.94041 1.00262 1.21140 0.93722 0.98627 0.95278 1.21148 0.94731 0.98075 1.00619 1.21105 0.99490 0.92844 1.00285 1.20970 0.94041 0.97971 1.01666 1.20990 0.94917 0.97257 0.99717 0.92651 0.94708 0.93734 0.92531 0.97021 0.92615 0.87860 0.73687 0.84633 0.86170 0.86497 0.86325 0.86227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 7.36 37.16 0.27 -2.71 16 2 C 0.18 4.25 1.65 -68.87 -0.11 4.13 16 3 H 0.00 0.11 5.31 -51.93 -0.28 -0.17 16 4 C -0.51 -13.71 7.28 -34.44 -0.25 -13.96 16 5 H 0.08 2.50 7.32 -52.49 -0.38 2.12 16 6 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 7 N -0.89 -26.54 13.96 55.43 0.77 -25.77 16 8 Si 0.87 20.93 26.55 -169.99 -4.51 16.41 16 9 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 11 H -0.26 -6.01 6.28 56.52 0.35 -5.66 16 12 N -0.51 -10.56 3.97 -231.10 -0.92 -11.48 16 13 C 0.02 0.39 8.56 60.06 0.51 0.90 16 14 C 0.13 2.34 2.20 -70.01 -0.15 2.19 16 15 H 0.07 1.20 7.69 -51.93 -0.40 0.80 16 16 C 0.49 8.02 6.00 36.01 0.22 8.24 16 17 O -0.49 -9.14 16.02 -18.75 -0.30 -9.45 16 18 O -0.52 -6.66 13.42 -39.25 -0.53 -7.19 16 19 C -0.06 -1.07 2.47 -104.62 -0.26 -1.33 16 20 C -0.07 -1.14 7.25 -39.58 -0.29 -1.43 16 21 C -0.13 -1.78 10.05 -39.58 -0.40 -2.18 16 22 C -0.12 -1.50 10.05 -39.58 -0.40 -1.90 16 23 C -0.13 -1.65 10.05 -39.58 -0.40 -2.05 16 24 C -0.11 -1.60 8.45 -39.58 -0.33 -1.94 16 25 H 0.05 1.20 7.12 -51.93 -0.37 0.83 16 26 H 0.03 0.68 4.63 -51.93 -0.24 0.44 16 27 H 0.04 1.00 7.46 -51.93 -0.39 0.61 16 28 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 29 H 0.01 0.22 8.12 -51.93 -0.42 -0.20 16 30 H 0.06 1.08 6.03 -51.93 -0.31 0.77 16 31 H 0.10 2.35 5.88 -51.94 -0.31 2.05 16 32 H 0.40 3.22 9.10 45.56 0.41 3.63 16 33 H 0.14 2.44 7.93 -52.49 -0.42 2.02 16 34 H 0.12 1.42 8.06 -52.48 -0.42 1.00 16 35 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 36 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 37 H 0.12 1.55 7.99 -52.49 -0.42 1.13 16 LS Contribution 298.31 15.07 4.50 4.50 Total: -1.00 -31.17 298.31 -6.64 -37.81 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -3.97 Total: 5.21 kcal Atomic # 6 Polarization: -8.37 SS G_CDS: -1.69 Total: -10.05 kcal Atomic # 7 Polarization: -37.10 SS G_CDS: -0.14 Total: -37.25 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: -0.83 Total: -16.64 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.51 Total: 16.41 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -31.17 -6.64 -37.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063087156.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.123 kcal (2) G-P(sol) polarization free energy of solvation -31.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds