Wall clock time and date at job start Mon Mar 30 2020 06:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.46407 * 2 1 4 4 C 1.50693 * 109.47072 * 239.99832 * 2 1 3 5 5 H 1.07997 * 120.00352 * 268.05100 * 4 2 1 6 6 C 1.37878 * 120.00084 * 88.33337 * 4 2 1 7 7 N 1.31516 * 120.00538 * 184.58102 * 6 4 2 8 8 Si 1.86802 * 119.99785 * 4.58549 * 6 4 2 9 9 H 1.48499 * 109.47542 * 93.46320 * 8 6 4 10 10 H 1.48502 * 109.47046 * 213.46179 * 8 6 4 11 11 H 1.48497 * 109.47331 * 333.45783 * 8 6 4 12 12 N 1.46896 * 109.47389 * 119.99511 * 2 1 3 13 13 C 1.46899 * 111.00226 * 165.56232 * 12 2 1 14 14 C 1.46904 * 111.00127 * 289.52272 * 12 2 1 15 15 H 1.08995 * 109.46897 * 311.37629 * 14 12 2 16 16 C 1.50700 * 109.47020 * 191.37345 * 14 12 2 17 17 O 1.20827 * 119.99871 * 319.94124 * 16 14 12 18 18 O 1.34228 * 119.99942 * 139.94463 * 16 14 12 19 19 C 1.50701 * 109.46906 * 71.37503 * 14 12 2 20 20 C 1.38237 * 120.00217 * 47.03310 * 19 14 12 21 21 C 1.38235 * 119.99448 * 179.80692 * 20 19 14 22 22 C 1.38232 * 120.00657 * 0.39659 * 21 20 19 23 23 C 1.38238 * 119.99721 * 359.85464 * 22 21 20 24 24 C 1.38236 * 120.00011 * 359.95826 * 23 22 21 25 25 H 1.09006 * 109.47277 * 189.75290 * 1 2 3 26 26 H 1.08998 * 109.47638 * 309.74968 * 1 2 3 27 27 H 1.08997 * 109.47713 * 69.75627 * 1 2 3 28 28 H 0.96997 * 120.00330 * 179.97438 * 7 6 4 29 29 H 1.09001 * 109.46512 * 70.37911 * 13 12 2 30 30 H 1.08999 * 109.47126 * 190.37504 * 13 12 2 31 31 H 1.08989 * 109.47366 * 310.38328 * 13 12 2 32 32 H 0.96707 * 116.99929 * 180.02562 * 18 16 14 33 33 H 1.07994 * 119.99968 * 359.97438 * 20 19 14 34 34 H 1.08004 * 119.99477 * 180.22405 * 21 20 19 35 35 H 1.07995 * 120.00157 * 179.83274 * 22 21 20 36 36 H 1.08001 * 119.99896 * 179.97438 * 23 22 21 37 37 H 1.07998 * 119.99998 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.2423 -1.7692 -1.1948 6 6 2.2293 -0.0076 -2.4001 7 7 2.5809 -0.6419 -3.4972 8 14 1.9971 1.8458 -2.4265 9 1 3.3021 2.5118 -2.1846 10 1 1.4683 2.2595 -3.7511 11 1 1.0361 2.2394 -1.3651 12 7 2.0197 -0.6924 1.1994 13 6 3.4473 -1.0153 1.0749 14 6 1.7631 0.1026 2.4079 15 1 2.0968 1.1275 2.2461 16 6 2.5152 -0.4931 3.5700 17 8 2.5760 -1.6929 3.6991 18 8 3.1174 0.3093 4.4618 19 6 0.2865 0.0966 2.7089 20 6 -0.4188 -1.0921 2.6860 21 6 -1.7724 -1.0980 2.9661 22 6 -2.4225 0.0857 3.2610 23 6 -1.7182 1.2751 3.2788 24 6 -0.3638 1.2806 3.0025 25 1 -0.3634 -1.0129 0.1741 26 1 -0.3634 0.6571 0.7901 27 1 -0.3634 0.3556 -0.9641 28 1 2.7192 -0.1475 -4.3202 29 1 4.0334 -0.0979 1.1301 30 1 3.7408 -1.6831 1.8849 31 1 3.6271 -1.5042 0.1176 32 1 3.5880 -0.1190 5.1901 33 1 0.0883 -2.0164 2.4520 34 1 -2.3227 -2.0272 2.9518 35 1 -3.4806 0.0814 3.4772 36 1 -2.2262 2.2000 3.5088 37 1 0.1865 2.2098 3.0168 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063087156.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:41 Heat of formation + Delta-G solvation = -65.478712 kcal Electronic energy + Delta-G solvation = -20733.327535 eV Core-core repulsion = 17668.407442 eV Total energy + Delta-G solvation = -3064.920093 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.88007 -40.12836 -38.38561 -37.06389 -34.84130 -32.92879 -32.01879 -31.71823 -28.48554 -27.11019 -25.71211 -23.51592 -23.37180 -22.17375 -20.78064 -19.32631 -19.04648 -18.05794 -17.46303 -16.87522 -16.40905 -16.24529 -15.87115 -15.50282 -15.02783 -15.01065 -14.53059 -14.22098 -14.15951 -13.90806 -13.54786 -13.28744 -13.06730 -12.81523 -12.62039 -12.57277 -12.15259 -12.12103 -12.00468 -11.83185 -11.73787 -11.45221 -11.11787 -10.75841 -9.70646 -9.48939 -9.17842 -8.29227 -6.32528 0.37522 0.59280 1.13090 1.31564 1.34827 1.45277 1.93838 2.32677 2.83261 3.05823 3.25600 3.70132 3.94481 4.21394 4.25336 4.27600 4.36037 4.41109 4.47601 4.65220 4.73790 4.79344 4.89073 4.90412 5.08111 5.10558 5.23750 5.25229 5.44818 5.53476 5.59833 5.67823 5.71072 5.72536 5.97607 6.13731 6.19091 6.55496 6.73548 6.97765 7.32054 8.86898 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.018013 B = 0.008261 C = 0.006751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.024417 B = 3388.687741 C = 4146.838524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.190 3.810 3 H 0.006 0.994 4 C -0.505 4.505 5 H 0.039 0.961 6 C 0.018 3.982 7 N -0.943 5.943 8 Si 0.930 3.070 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.238 1.238 12 N -0.519 5.519 13 C 0.028 3.972 14 C 0.128 3.872 15 H 0.079 0.921 16 C 0.496 3.504 17 O -0.522 6.522 18 O -0.507 6.507 19 C -0.086 4.086 20 C -0.091 4.091 21 C -0.134 4.134 22 C -0.113 4.113 23 C -0.123 4.123 24 C -0.118 4.118 25 H 0.046 0.954 26 H 0.061 0.939 27 H 0.032 0.968 28 H 0.266 0.734 29 H 0.021 0.979 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.429 0.571 33 H 0.106 0.894 34 H 0.135 0.865 35 H 0.150 0.850 36 H 0.152 0.848 37 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.429 6.915 17.039 19.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.083 3.917 3 H 0.023 0.977 4 C -0.543 4.543 5 H 0.057 0.943 6 C -0.180 4.180 7 N -0.583 5.583 8 Si 0.753 3.247 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.161 1.161 12 N -0.245 5.245 13 C -0.119 4.119 14 C 0.018 3.982 15 H 0.096 0.904 16 C 0.338 3.662 17 O -0.410 6.410 18 O -0.320 6.320 19 C -0.087 4.087 20 C -0.110 4.110 21 C -0.151 4.151 22 C -0.131 4.131 23 C -0.141 4.141 24 C -0.136 4.136 25 H 0.065 0.935 26 H 0.080 0.920 27 H 0.051 0.949 28 H 0.075 0.925 29 H 0.039 0.961 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.291 0.709 33 H 0.125 0.875 34 H 0.153 0.847 35 H 0.168 0.832 36 H 0.170 0.830 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -6.812 6.350 16.631 19.061 hybrid contribution 1.224 0.611 -0.445 1.439 sum -5.588 6.960 16.186 18.484 Atomic orbital electron populations 1.22171 0.95979 1.00767 0.99551 1.19645 0.93676 0.91571 0.86773 0.97694 1.21012 1.43373 0.95759 0.94152 0.94283 1.25752 0.94399 1.02970 0.94866 1.70037 1.49245 1.37945 1.01113 0.85992 0.79621 0.80620 0.78445 1.19700 1.21029 1.16119 1.62022 1.17486 1.44077 1.00951 1.22373 0.87180 0.99395 1.02988 1.20179 0.93060 0.97023 0.87924 0.90369 1.23048 0.75592 0.84958 0.82638 1.90680 1.58389 1.17480 1.74442 1.84495 1.64749 1.43948 1.38857 1.19244 0.92207 0.94989 1.02263 1.21020 0.94994 0.97717 0.97222 1.21383 0.93824 0.99734 1.00200 1.21511 1.01069 0.92032 0.98490 1.21396 0.93382 0.99396 0.99924 1.21250 0.95921 0.96952 0.99467 0.93514 0.92032 0.94882 0.92473 0.96063 0.91722 0.91179 0.70944 0.87546 0.84694 0.83242 0.83014 0.84554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.38 7.36 71.98 0.53 -4.85 16 2 C 0.19 8.78 1.65 44.17 0.07 8.85 16 3 H 0.01 0.25 5.31 -2.39 -0.01 0.24 16 4 C -0.50 -28.23 7.28 25.60 0.19 -28.04 16 5 H 0.04 2.48 7.32 -2.91 -0.02 2.46 16 6 C 0.02 1.03 5.47 84.65 0.46 1.49 16 7 N -0.94 -58.03 13.96 21.45 0.30 -57.73 16 8 Si 0.93 42.85 26.55 68.60 1.82 44.67 16 9 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 10 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 11 H -0.24 -10.04 6.28 99.48 0.62 -9.41 16 12 N -0.52 -21.79 3.97 -885.06 -3.52 -25.31 16 13 C 0.03 1.20 8.56 127.69 1.09 2.29 16 14 C 0.13 4.38 2.20 43.42 0.10 4.47 16 15 H 0.08 2.53 7.69 -2.39 -0.02 2.51 16 16 C 0.50 15.69 6.00 71.24 0.43 16.12 16 17 O -0.52 -19.26 16.02 21.96 0.35 -18.90 16 18 O -0.51 -11.67 13.42 -51.40 -0.69 -12.36 16 19 C -0.09 -2.70 2.47 -19.86 -0.05 -2.75 16 20 C -0.09 -2.93 7.25 22.27 0.16 -2.77 16 21 C -0.13 -3.45 10.05 22.27 0.22 -3.23 16 22 C -0.11 -2.39 10.05 22.27 0.22 -2.17 16 23 C -0.12 -2.59 10.05 22.27 0.22 -2.36 16 24 C -0.12 -2.99 8.45 22.27 0.19 -2.80 16 25 H 0.05 2.03 7.12 -2.38 -0.02 2.01 16 26 H 0.06 2.27 4.63 -2.39 -0.01 2.26 16 27 H 0.03 1.44 7.46 -2.39 -0.02 1.42 16 28 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 29 H 0.02 0.82 8.12 -2.39 -0.02 0.80 16 30 H 0.06 2.57 6.03 -2.39 -0.01 2.56 16 31 H 0.07 3.39 5.88 -2.39 -0.01 3.38 16 32 H 0.43 5.61 9.10 -74.05 -0.67 4.94 16 33 H 0.11 3.98 7.93 -2.91 -0.02 3.96 16 34 H 0.14 2.96 8.06 -2.91 -0.02 2.93 16 35 H 0.15 2.19 8.06 -2.91 -0.02 2.16 16 36 H 0.15 2.20 8.06 -2.91 -0.02 2.17 16 37 H 0.14 2.95 7.99 -2.91 -0.02 2.93 16 Total: -1.00 -69.66 298.31 2.44 -67.22 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: 0.33 Total: 18.17 kcal Atomic # 6 Polarization: -19.59 SS G_CDS: 3.84 Total: -15.75 kcal Atomic # 7 Polarization: -79.83 SS G_CDS: -3.22 Total: -83.04 kcal Atomic # 8 Polarization: -30.93 SS G_CDS: -0.34 Total: -31.26 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 1.82 Total: 44.67 kcal Total: -69.66 2.44 -67.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063087156.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.742 kcal (2) G-P(sol) polarization free energy of solvation -69.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds