Wall clock time and date at job start Mon Mar 30 2020 07:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47176 * 2 1 4 4 C 1.50708 * 109.47063 * 119.99892 * 2 1 3 5 5 H 1.07997 * 119.99964 * 120.00546 * 4 2 1 6 6 C 1.37877 * 119.99764 * 299.99518 * 4 2 1 7 7 N 1.31512 * 119.99854 * 179.97438 * 6 4 2 8 8 Si 1.86803 * 119.99997 * 0.02562 * 6 4 2 9 9 H 1.48506 * 109.47374 * 89.99601 * 8 6 4 10 10 H 1.48499 * 109.46996 * 209.99270 * 8 6 4 11 11 H 1.48497 * 109.46937 * 329.99344 * 8 6 4 12 12 N 1.46496 * 109.47247 * 239.99732 * 2 1 3 13 13 C 1.46504 * 120.00230 * 299.99752 * 12 2 1 14 14 C 1.34774 * 120.00207 * 119.99863 * 12 2 1 15 15 O 1.21588 * 120.00093 * 0.02562 * 14 12 2 16 16 N 1.34778 * 120.00227 * 179.97438 * 14 12 2 17 17 C 1.39944 * 120.00059 * 184.58829 * 16 14 12 18 18 C 1.38943 * 120.03288 * 144.62930 * 17 16 14 19 19 C 1.38150 * 120.07575 * 179.76568 * 18 17 16 20 20 C 1.38172 * 120.14285 * 0.50714 * 19 18 17 21 21 C 1.38942 * 120.06402 * 359.74655 * 20 19 18 22 22 N 1.39677 * 120.04050 * 179.97438 * 21 20 19 23 23 C 1.38711 * 120.02810 * 324.89991 * 17 16 14 24 24 H 1.08998 * 109.46746 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47117 * 300.00201 * 1 2 3 26 26 H 1.08996 * 109.46780 * 60.00521 * 1 2 3 27 27 H 0.97001 * 120.00214 * 180.02562 * 7 6 4 28 28 H 1.08994 * 109.47676 * 270.00344 * 13 12 2 29 29 H 1.09006 * 109.46461 * 30.00239 * 13 12 2 30 30 H 1.09000 * 109.47265 * 149.99386 * 13 12 2 31 31 H 0.96997 * 120.00346 * 4.58446 * 16 14 12 32 32 H 1.07990 * 119.96131 * 0.02562 * 18 17 16 33 33 H 1.07995 * 119.92420 * 180.22824 * 19 18 17 34 34 H 1.07996 * 119.96765 * 179.76446 * 20 19 18 35 35 H 0.96995 * 120.00490 * 180.02562 * 22 21 20 36 36 H 0.97006 * 119.99412 * 0.02562 * 22 21 20 37 37 H 1.07999 * 120.07398 * 359.95912 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6993 -0.2392 2.4828 7 7 2.1372 -0.8595 3.5566 8 14 0.6248 1.2792 2.6541 9 1 -0.8028 0.8730 2.6997 10 1 0.9759 1.9953 3.9068 11 1 0.8473 2.1766 1.4920 12 7 2.0183 -0.6906 -1.1961 13 6 1.6645 -2.0933 -1.4279 14 6 2.7932 -0.0357 -2.0833 15 8 3.0873 1.1282 -1.8908 16 7 3.2429 -0.6713 -3.1835 17 6 4.1247 -0.0224 -4.0550 18 6 5.1245 -0.7431 -4.6967 19 6 5.9925 -0.1043 -5.5610 20 6 5.8763 1.2546 -5.7823 21 6 4.8821 1.9820 -5.1398 22 7 4.7654 3.3558 -5.3635 23 6 4.0051 1.3420 -4.2749 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 1.9026 -0.5282 4.4376 28 1 2.4157 -2.7378 -0.9715 29 1 0.6904 -2.3002 -0.9845 30 1 1.6238 -2.2853 -2.5001 31 1 2.9554 -1.5784 -3.3711 32 1 5.2204 -1.8046 -4.5227 33 1 6.7663 -0.6676 -6.0612 34 1 6.5588 1.7518 -6.4557 35 1 4.0714 3.8632 -4.9144 36 1 5.3786 3.8025 -5.9681 37 1 3.2312 1.9050 -3.7745 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063096493.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:07 Heat of formation + Delta-G solvation = 17.751915 kcal Electronic energy + Delta-G solvation = -19776.224796 eV Core-core repulsion = 16747.206605 eV Total energy + Delta-G solvation = -3029.018191 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.137 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.29378 -38.66030 -35.90161 -34.94610 -33.56015 -32.60912 -30.55083 -29.13549 -28.17707 -26.32502 -25.11321 -23.11280 -22.01486 -21.00653 -19.19388 -17.99667 -17.22136 -16.69781 -16.32142 -15.97745 -15.58366 -15.04063 -14.54507 -14.21022 -13.78120 -13.38685 -13.22441 -13.03382 -12.90282 -12.49263 -12.24003 -11.92684 -11.66715 -11.53035 -11.34274 -11.17862 -10.78838 -10.67350 -10.14108 -9.74262 -9.65046 -9.40980 -9.24346 -8.63230 -8.06848 -7.67713 -7.36550 -6.14065 -4.14599 1.62665 1.78885 3.11188 3.23291 3.37303 3.39940 3.67116 3.95401 4.17036 4.35374 4.41348 5.08622 5.18611 5.34798 5.46739 5.49416 5.72993 5.78820 5.91107 5.99006 6.14505 6.23612 6.31114 6.41669 6.47736 6.59784 6.64016 6.68662 6.83569 6.93978 7.20137 7.33312 7.55543 7.61856 7.64317 7.83694 8.36893 8.51395 8.87309 9.10252 9.46939 10.98787 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.029123 B = 0.004967 C = 0.004635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.223855 B = 5636.329642 C = 6038.955680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.244 3.756 3 H 0.064 0.936 4 C -0.527 4.527 5 H 0.078 0.922 6 C 0.076 3.924 7 N -0.895 5.895 8 Si 0.883 3.117 9 H -0.277 1.277 10 H -0.294 1.294 11 H -0.263 1.263 12 N -0.599 5.599 13 C 0.087 3.913 14 C 0.700 3.300 15 O -0.579 6.579 16 N -0.694 5.694 17 C 0.221 3.779 18 C -0.210 4.210 19 C -0.056 4.056 20 C -0.225 4.225 21 C 0.229 3.771 22 N -0.879 5.879 23 C -0.198 4.198 24 H 0.056 0.944 25 H 0.051 0.949 26 H 0.033 0.967 27 H 0.266 0.734 28 H 0.055 0.945 29 H 0.078 0.922 30 H 0.047 0.953 31 H 0.404 0.596 32 H 0.119 0.881 33 H 0.120 0.880 34 H 0.114 0.886 35 H 0.398 0.602 36 H 0.395 0.605 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.191 1.060 -18.417 18.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.142 3.858 3 H 0.082 0.918 4 C -0.566 4.566 5 H 0.096 0.904 6 C -0.127 4.127 7 N -0.533 5.533 8 Si 0.713 3.287 9 H -0.204 1.204 10 H -0.221 1.221 11 H -0.188 1.188 12 N -0.333 5.333 13 C -0.057 4.057 14 C 0.402 3.598 15 O -0.456 6.456 16 N -0.343 5.343 17 C 0.124 3.876 18 C -0.233 4.233 19 C -0.076 4.076 20 C -0.248 4.248 21 C 0.124 3.876 22 N -0.418 5.418 23 C -0.224 4.224 24 H 0.075 0.925 25 H 0.069 0.931 26 H 0.052 0.948 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.097 0.903 30 H 0.066 0.934 31 H 0.241 0.759 32 H 0.137 0.863 33 H 0.138 0.862 34 H 0.132 0.868 35 H 0.226 0.774 36 H 0.222 0.778 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 2.331 1.821 -17.935 18.178 hybrid contribution -0.733 0.488 0.246 0.915 sum 1.597 2.309 -17.690 17.911 Atomic orbital electron populations 1.22480 0.99159 1.01068 0.99309 1.19226 0.89704 0.94998 0.81842 0.91796 1.21173 1.32646 1.14271 0.88471 0.90362 1.24857 0.95701 0.96571 0.95600 1.69873 1.45236 1.40197 0.97962 0.86917 0.80381 0.83876 0.77515 1.20403 1.22139 1.18788 1.47170 1.51251 1.11709 1.23213 1.21548 1.02377 0.83077 0.98682 1.15912 0.79441 0.85004 0.79464 1.90855 1.62309 1.15365 1.77105 1.42918 1.48870 1.18572 1.23890 1.17251 0.89232 0.91607 0.89522 1.20621 0.97805 1.00185 1.04680 1.20543 0.97231 0.93661 0.96120 1.20444 1.02310 0.94756 1.07300 1.17606 0.93179 0.84265 0.92574 1.42434 1.39650 1.05853 1.53826 1.20740 1.04061 0.94478 1.03087 0.92524 0.93053 0.94766 0.92440 0.92658 0.90335 0.93407 0.75933 0.86331 0.86165 0.86760 0.77360 0.77776 0.84218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.46 8.65 37.16 0.32 -3.14 16 2 C 0.24 5.91 2.23 -69.08 -0.15 5.76 16 3 H 0.06 1.73 5.96 -51.93 -0.31 1.42 16 4 C -0.53 -14.63 8.95 -34.44 -0.31 -14.94 16 5 H 0.08 2.34 7.89 -52.49 -0.41 1.93 16 6 C 0.08 2.16 5.45 -17.82 -0.10 2.06 16 7 N -0.90 -27.03 13.96 55.43 0.77 -26.25 16 8 Si 0.88 21.84 24.37 -169.99 -4.14 17.70 16 9 H -0.28 -6.52 6.87 56.52 0.39 -6.13 16 10 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 11 H -0.26 -6.43 6.53 56.52 0.37 -6.06 16 12 N -0.60 -12.38 2.75 -181.00 -0.50 -12.88 16 13 C 0.09 1.39 9.48 59.85 0.57 1.96 16 14 C 0.70 14.49 8.12 -86.92 -0.71 13.79 16 15 O -0.58 -13.99 13.10 5.29 0.07 -13.92 16 16 N -0.69 -11.27 5.21 -14.24 -0.07 -11.34 16 17 C 0.22 3.53 6.30 -83.72 -0.53 3.00 16 18 C -0.21 -2.81 9.96 -39.35 -0.39 -3.20 16 19 C -0.06 -0.67 10.03 -39.64 -0.40 -1.07 16 20 C -0.22 -2.74 9.89 -39.35 -0.39 -3.13 16 21 C 0.23 3.14 6.75 -83.81 -0.57 2.58 16 22 N -0.88 -9.32 9.09 32.40 0.29 -9.02 16 23 C -0.20 -3.27 8.54 -39.20 -0.33 -3.61 16 24 H 0.06 1.11 6.66 -51.93 -0.35 0.77 16 25 H 0.05 1.14 3.27 -51.93 -0.17 0.97 16 26 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 28 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.08 1.23 6.43 -51.93 -0.33 0.90 16 30 H 0.05 0.57 6.30 -51.93 -0.33 0.24 16 31 H 0.40 5.20 6.52 -40.82 -0.27 4.94 16 32 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 33 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 34 H 0.11 1.12 8.06 -52.49 -0.42 0.69 16 35 H 0.40 4.01 8.84 -40.82 -0.36 3.65 16 36 H 0.39 3.12 8.84 -40.82 -0.36 2.76 16 37 H 0.14 2.59 6.22 -52.49 -0.33 2.27 16 LS Contribution 299.05 15.07 4.51 4.51 Total: -1.00 -33.66 299.05 -6.56 -40.23 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -4.51 Total: 10.92 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: -2.98 Total: 0.06 kcal Atomic # 7 Polarization: -59.99 SS G_CDS: 0.50 Total: -59.50 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: 0.07 Total: -13.92 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.14 Total: 17.70 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -33.66 -6.56 -40.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063096493.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.980 kcal (2) G-P(sol) polarization free energy of solvation -33.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds