Wall clock time and date at job start Mon Mar 30 2020 07:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47176 * 2 1 4 4 C 1.50708 * 109.47063 * 119.99892 * 2 1 3 5 5 H 1.07997 * 119.99964 * 120.00546 * 4 2 1 6 6 C 1.37877 * 119.99764 * 299.99518 * 4 2 1 7 7 N 1.31512 * 119.99854 * 179.97438 * 6 4 2 8 8 Si 1.86803 * 119.99997 * 0.02562 * 6 4 2 9 9 H 1.48506 * 109.47374 * 89.99601 * 8 6 4 10 10 H 1.48499 * 109.46996 * 209.99270 * 8 6 4 11 11 H 1.48497 * 109.46937 * 329.99344 * 8 6 4 12 12 N 1.46496 * 109.47247 * 239.99732 * 2 1 3 13 13 C 1.46504 * 120.00230 * 299.99752 * 12 2 1 14 14 C 1.34774 * 120.00207 * 119.99863 * 12 2 1 15 15 O 1.21588 * 120.00093 * 0.02562 * 14 12 2 16 16 N 1.34778 * 120.00227 * 179.97438 * 14 12 2 17 17 C 1.39944 * 120.00059 * 184.58829 * 16 14 12 18 18 C 1.38943 * 120.03288 * 144.62930 * 17 16 14 19 19 C 1.38150 * 120.07575 * 179.76568 * 18 17 16 20 20 C 1.38172 * 120.14285 * 0.50714 * 19 18 17 21 21 C 1.38942 * 120.06402 * 359.74655 * 20 19 18 22 22 N 1.39677 * 120.04050 * 179.97438 * 21 20 19 23 23 C 1.38711 * 120.02810 * 324.89991 * 17 16 14 24 24 H 1.08998 * 109.46746 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47117 * 300.00201 * 1 2 3 26 26 H 1.08996 * 109.46780 * 60.00521 * 1 2 3 27 27 H 0.97001 * 120.00214 * 180.02562 * 7 6 4 28 28 H 1.08994 * 109.47676 * 270.00344 * 13 12 2 29 29 H 1.09006 * 109.46461 * 30.00239 * 13 12 2 30 30 H 1.09000 * 109.47265 * 149.99386 * 13 12 2 31 31 H 0.96997 * 120.00346 * 4.58446 * 16 14 12 32 32 H 1.07990 * 119.96131 * 0.02562 * 18 17 16 33 33 H 1.07995 * 119.92420 * 180.22824 * 19 18 17 34 34 H 1.07996 * 119.96765 * 179.76446 * 20 19 18 35 35 H 0.96995 * 120.00490 * 180.02562 * 22 21 20 36 36 H 0.97006 * 119.99412 * 0.02562 * 22 21 20 37 37 H 1.07999 * 120.07398 * 359.95912 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6993 -0.2392 2.4828 7 7 2.1372 -0.8595 3.5566 8 14 0.6248 1.2792 2.6541 9 1 -0.8028 0.8730 2.6997 10 1 0.9759 1.9953 3.9068 11 1 0.8473 2.1766 1.4920 12 7 2.0183 -0.6906 -1.1961 13 6 1.6645 -2.0933 -1.4279 14 6 2.7932 -0.0357 -2.0833 15 8 3.0873 1.1282 -1.8908 16 7 3.2429 -0.6713 -3.1835 17 6 4.1247 -0.0224 -4.0550 18 6 5.1245 -0.7431 -4.6967 19 6 5.9925 -0.1043 -5.5610 20 6 5.8763 1.2546 -5.7823 21 6 4.8821 1.9820 -5.1398 22 7 4.7654 3.3558 -5.3635 23 6 4.0051 1.3420 -4.2749 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 1.9026 -0.5282 4.4376 28 1 2.4157 -2.7378 -0.9715 29 1 0.6904 -2.3002 -0.9845 30 1 1.6238 -2.2853 -2.5001 31 1 2.9554 -1.5784 -3.3711 32 1 5.2204 -1.8046 -4.5227 33 1 6.7663 -0.6676 -6.0612 34 1 6.5588 1.7518 -6.4557 35 1 4.0714 3.8632 -4.9144 36 1 5.3786 3.8025 -5.9681 37 1 3.2312 1.9050 -3.7745 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063096493.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:07 Heat of formation + Delta-G solvation = -7.359207 kcal Electronic energy + Delta-G solvation = -19777.313696 eV Core-core repulsion = 16747.206605 eV Total energy + Delta-G solvation = -3030.107091 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.137 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.70726 -39.87230 -37.49694 -36.30403 -34.94199 -34.34956 -32.28316 -30.33569 -29.22247 -27.76482 -27.13646 -24.47485 -23.15902 -22.43238 -20.76073 -19.42724 -18.81193 -18.26208 -17.53749 -17.37658 -16.96153 -16.41319 -16.22394 -15.56403 -15.19665 -14.76894 -14.71707 -14.38057 -14.16865 -14.07464 -13.87025 -13.61346 -13.17405 -13.04508 -12.61316 -12.51510 -12.39126 -12.04602 -11.92819 -11.57405 -11.35609 -10.96562 -10.82794 -10.79435 -9.54651 -9.05441 -8.34856 -8.34777 -6.39416 0.52836 0.76057 1.26295 1.36249 1.45001 1.67179 2.16934 2.28029 2.92970 3.00802 3.07541 3.15851 4.14090 4.26939 4.37241 4.41688 4.47884 4.54118 4.58488 4.67931 4.69565 4.79707 4.91015 4.96558 5.07325 5.20965 5.42760 5.48319 5.54045 5.55440 5.69275 5.72833 6.02433 6.11004 6.33330 6.62444 6.63768 7.00075 7.05202 7.24643 7.56460 8.81390 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.029123 B = 0.004967 C = 0.004635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.223855 B = 5636.329642 C = 6038.955680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.248 3.752 3 H 0.031 0.969 4 C -0.526 4.526 5 H 0.043 0.957 6 C 0.023 3.977 7 N -0.940 5.940 8 Si 0.942 3.058 9 H -0.251 1.251 10 H -0.296 1.296 11 H -0.263 1.263 12 N -0.607 5.607 13 C 0.083 3.917 14 C 0.694 3.306 15 O -0.622 6.622 16 N -0.676 5.676 17 C 0.192 3.808 18 C -0.212 4.212 19 C -0.050 4.050 20 C -0.222 4.222 21 C 0.221 3.779 22 N -0.870 5.870 23 C -0.229 4.229 24 H 0.073 0.927 25 H 0.043 0.957 26 H 0.056 0.944 27 H 0.268 0.732 28 H 0.048 0.952 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.419 0.581 32 H 0.140 0.860 33 H 0.157 0.843 34 H 0.144 0.856 35 H 0.399 0.601 36 H 0.409 0.591 37 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.206 0.854 -20.885 21.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.144 3.856 3 H 0.049 0.951 4 C -0.565 4.565 5 H 0.062 0.938 6 C -0.176 4.176 7 N -0.579 5.579 8 Si 0.769 3.231 9 H -0.176 1.176 10 H -0.224 1.224 11 H -0.188 1.188 12 N -0.341 5.341 13 C -0.060 4.060 14 C 0.396 3.604 15 O -0.502 6.502 16 N -0.326 5.326 17 C 0.096 3.904 18 C -0.235 4.235 19 C -0.070 4.070 20 C -0.245 4.245 21 C 0.115 3.885 22 N -0.410 5.410 23 C -0.255 4.255 24 H 0.092 0.908 25 H 0.062 0.938 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.066 0.934 29 H 0.101 0.899 30 H 0.111 0.889 31 H 0.259 0.741 32 H 0.157 0.843 33 H 0.175 0.825 34 H 0.162 0.838 35 H 0.227 0.773 36 H 0.239 0.761 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 2.346 1.583 -20.472 20.667 hybrid contribution -0.585 0.526 0.897 1.193 sum 1.761 2.109 -19.575 19.767 Atomic orbital electron populations 1.22324 0.96411 1.02456 0.99968 1.18883 0.91707 0.93104 0.81890 0.95061 1.21371 1.31736 1.13137 0.90253 0.93831 1.25640 0.97184 0.99493 0.95247 1.70002 1.47145 1.42177 0.98599 0.85969 0.79962 0.80110 0.77079 1.17610 1.22363 1.18769 1.47112 1.51473 1.13330 1.22214 1.21789 1.02212 0.80247 1.01719 1.16112 0.79275 0.84669 0.80361 1.90823 1.63764 1.17385 1.78267 1.42622 1.48472 1.18938 1.22562 1.17573 0.90463 0.91893 0.90489 1.20894 0.97014 1.01193 1.04372 1.21017 0.97125 0.93790 0.95020 1.20851 1.01743 0.95115 1.06814 1.17775 0.93088 0.85443 0.92209 1.42421 1.39844 1.04963 1.53729 1.20658 1.04901 0.95048 1.04855 0.90805 0.93820 0.92536 0.92246 0.93356 0.89881 0.88899 0.74088 0.84255 0.82518 0.83789 0.77254 0.76063 0.87362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.33 8.65 71.98 0.62 -5.70 16 2 C 0.25 12.10 2.23 44.25 0.10 12.20 16 3 H 0.03 1.74 5.96 -2.39 -0.01 1.73 16 4 C -0.53 -29.95 8.95 25.60 0.23 -29.73 16 5 H 0.04 2.71 7.89 -2.91 -0.02 2.69 16 6 C 0.02 1.34 5.45 84.65 0.46 1.80 16 7 N -0.94 -58.12 13.96 21.45 0.30 -57.82 16 8 Si 0.94 45.34 24.37 68.60 1.67 47.01 16 9 H -0.25 -10.97 6.87 99.48 0.68 -10.28 16 10 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 11 H -0.26 -12.56 6.53 99.48 0.65 -11.91 16 12 N -0.61 -25.13 2.75 -844.83 -2.33 -27.46 16 13 C 0.08 2.53 9.48 127.77 1.21 3.75 16 14 C 0.69 29.15 8.12 179.05 1.45 30.60 16 15 O -0.62 -31.27 13.10 -3.99 -0.05 -31.32 16 16 N -0.68 -21.60 5.21 -317.24 -1.65 -23.26 16 17 C 0.19 6.01 6.30 38.13 0.24 6.25 16 18 C -0.21 -5.17 9.96 22.42 0.22 -4.94 16 19 C -0.05 -1.02 10.03 22.23 0.22 -0.80 16 20 C -0.22 -4.75 9.89 22.42 0.22 -4.52 16 21 C 0.22 5.84 6.75 38.20 0.26 6.10 16 22 N -0.87 -17.54 9.09 -51.41 -0.47 -18.01 16 23 C -0.23 -7.66 8.54 22.52 0.19 -7.46 16 24 H 0.07 2.75 6.66 -2.39 -0.02 2.74 16 25 H 0.04 1.86 3.27 -2.39 -0.01 1.85 16 26 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 27 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 28 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.08 2.47 6.43 -2.38 -0.02 2.46 16 30 H 0.09 1.97 6.30 -2.39 -0.02 1.95 16 31 H 0.42 10.09 6.52 -92.71 -0.60 9.49 16 32 H 0.14 2.73 8.06 -2.92 -0.02 2.70 16 33 H 0.16 2.03 8.06 -2.91 -0.02 2.01 16 34 H 0.14 2.19 8.06 -2.91 -0.02 2.17 16 35 H 0.40 8.01 8.84 -92.71 -0.82 7.19 16 36 H 0.41 5.66 8.84 -92.70 -0.82 4.84 16 37 H 0.11 4.26 6.22 -2.91 -0.02 4.24 16 Total: -1.00 -76.36 299.05 1.72 -74.64 By element: Atomic # 1 Polarization: 29.86 SS G_CDS: -1.19 Total: 28.67 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: 5.44 Total: 7.54 kcal Atomic # 7 Polarization: -122.39 SS G_CDS: -4.15 Total: -126.54 kcal Atomic # 8 Polarization: -31.27 SS G_CDS: -0.05 Total: -31.32 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 1.67 Total: 47.01 kcal Total: -76.36 1.72 -74.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063096493.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.284 kcal (2) G-P(sol) polarization free energy of solvation -76.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds