Wall clock time and date at job start Mon Mar 30 2020 07:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46694 * 2 1 4 4 C 1.50695 * 109.46950 * 120.00318 * 2 1 3 5 5 H 1.07998 * 120.00346 * 120.00498 * 4 2 1 6 6 C 1.37879 * 120.00102 * 299.99476 * 4 2 1 7 7 N 1.31520 * 119.99788 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00370 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46925 * 0.02562 * 8 6 4 10 10 H 1.48494 * 109.46956 * 120.00387 * 8 6 4 11 11 H 1.48498 * 109.47211 * 240.00450 * 8 6 4 12 12 N 1.46502 * 109.46771 * 239.99985 * 2 1 3 13 13 C 1.46501 * 120.00243 * 299.99577 * 12 2 1 14 14 C 1.34777 * 119.99811 * 120.00207 * 12 2 1 15 15 O 1.21603 * 119.99842 * 359.97438 * 14 12 2 16 16 N 1.34771 * 120.00350 * 179.97438 * 14 12 2 17 17 C 1.40196 * 120.00300 * 184.58790 * 16 14 12 18 18 C 1.38841 * 119.99473 * 324.90759 * 17 16 14 19 19 C 1.38068 * 120.00371 * 180.02562 * 18 17 16 20 20 C 1.38877 * 119.99765 * 359.97438 * 19 18 17 21 21 N 1.39919 * 120.00373 * 179.97438 * 20 19 18 22 22 C 1.38878 * 119.99252 * 0.25563 * 20 19 18 23 23 C 1.38078 * 119.99160 * 359.51721 * 22 20 19 24 24 H 1.09010 * 109.47236 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47502 * 299.99651 * 1 2 3 26 26 H 1.08994 * 109.47351 * 60.00106 * 1 2 3 27 27 H 0.97003 * 119.99717 * 179.97438 * 7 6 4 28 28 H 1.09002 * 109.47051 * 270.00117 * 13 12 2 29 29 H 1.09000 * 109.46809 * 30.00619 * 13 12 2 30 30 H 1.08998 * 109.46694 * 150.00160 * 13 12 2 31 31 H 0.97004 * 119.99986 * 4.58436 * 16 14 12 32 32 H 1.07999 * 119.99500 * 0.02562 * 18 17 16 33 33 H 1.08004 * 119.99836 * 179.97438 * 19 18 17 34 34 H 0.96998 * 120.00172 * 359.97438 * 21 20 19 35 35 H 0.96999 * 119.99668 * 179.73153 * 21 20 19 36 36 H 1.07993 * 120.00643 * 179.74421 * 22 20 19 37 37 H 1.07997 * 119.99904 * 180.23198 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1196 4.0080 9 1 3.1483 -2.2858 3.6038 10 1 3.1472 -0.1859 4.8161 11 1 1.1678 -1.5867 4.8165 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0932 -1.4280 14 6 2.7931 -0.0356 -2.0834 15 8 3.0866 1.1287 -1.8911 16 7 3.2428 -0.6710 -3.1836 17 6 4.1263 -0.0209 -4.0567 18 6 4.0061 1.3448 -4.2760 19 6 4.8757 1.9851 -5.1362 20 6 5.8710 1.2632 -5.7818 21 7 6.7520 1.9118 -6.6540 22 6 5.9881 -0.1038 -5.5660 23 6 5.1212 -0.7429 -4.7021 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8899 26 1 -0.3634 0.5138 -0.8899 27 1 0.7083 1.1609 3.4844 28 1 2.4158 -2.7377 -0.9717 29 1 0.6904 -2.3002 -0.9847 30 1 1.6238 -2.2852 -2.5002 31 1 2.9552 -1.5782 -3.3713 32 1 3.2322 1.9062 -3.7736 33 1 4.7818 3.0474 -5.3070 34 1 6.6674 2.8658 -6.8081 35 1 7.4497 1.4082 -7.1019 36 1 6.7595 -0.6661 -6.0711 37 1 5.2146 -1.8052 -4.5313 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063096498.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:13 Heat of formation + Delta-G solvation = 9.925001 kcal Electronic energy + Delta-G solvation = -19586.825047 eV Core-core repulsion = 16557.467456 eV Total energy + Delta-G solvation = -3029.357591 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.137 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.10972 -38.59881 -35.77404 -34.76728 -33.23346 -32.30504 -30.67137 -29.34169 -27.23339 -26.05180 -25.16721 -22.88562 -22.25782 -20.78462 -19.08498 -17.81551 -16.95664 -16.72813 -16.57122 -16.06187 -15.10616 -14.75262 -14.22112 -13.85983 -13.73134 -13.27395 -13.19056 -12.91953 -12.58045 -12.51615 -12.31087 -11.53957 -11.48729 -11.16550 -11.02009 -10.79387 -10.68104 -10.65222 -10.20639 -10.13435 -9.30479 -9.10629 -9.06308 -8.67728 -8.39855 -7.60015 -6.96815 -6.04120 -4.11451 1.62639 1.80416 3.28110 3.31645 3.36900 3.41760 3.82199 3.93154 4.22838 4.39973 4.62865 5.06941 5.16503 5.27100 5.59431 5.60532 5.72175 5.82510 6.03351 6.22326 6.27182 6.30480 6.47915 6.64552 6.79020 6.85519 6.86782 7.06829 7.23449 7.28578 7.51874 7.60796 7.74011 7.77912 7.89670 8.11028 8.25814 8.72186 8.90529 9.30957 9.55937 11.01233 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.032768 B = 0.004268 C = 0.004238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.293663 B = 6558.606437 C = 6605.885498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.272 3.728 3 H 0.065 0.935 4 C -0.523 4.523 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.898 3.102 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.284 1.284 12 N -0.606 5.606 13 C 0.088 3.912 14 C 0.697 3.303 15 O -0.583 6.583 16 N -0.695 5.695 17 C 0.122 3.878 18 C -0.071 4.071 19 C -0.178 4.178 20 C 0.187 3.813 21 N -0.886 5.886 22 C -0.181 4.181 23 C -0.107 4.107 24 H 0.029 0.971 25 H 0.094 0.906 26 H 0.012 0.988 27 H 0.262 0.738 28 H 0.048 0.952 29 H 0.076 0.924 30 H 0.044 0.956 31 H 0.399 0.601 32 H 0.143 0.857 33 H 0.119 0.881 34 H 0.395 0.605 35 H 0.393 0.607 36 H 0.118 0.882 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.127 -3.522 -16.383 17.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.172 3.828 3 H 0.083 0.917 4 C -0.562 4.562 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.726 3.274 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.210 1.210 12 N -0.341 5.341 13 C -0.056 4.056 14 C 0.399 3.601 15 O -0.460 6.460 16 N -0.345 5.345 17 C 0.026 3.974 18 C -0.092 4.092 19 C -0.201 4.201 20 C 0.084 3.916 21 N -0.426 5.426 22 C -0.204 4.204 23 C -0.128 4.128 24 H 0.048 0.952 25 H 0.113 0.887 26 H 0.031 0.969 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.095 0.905 30 H 0.063 0.937 31 H 0.236 0.764 32 H 0.160 0.840 33 H 0.137 0.863 34 H 0.222 0.778 35 H 0.221 0.779 36 H 0.136 0.864 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 6.138 -2.611 -15.937 17.276 hybrid contribution 0.455 -0.899 0.630 1.188 sum 6.593 -3.511 -15.307 17.032 Atomic orbital electron populations 1.22116 0.98308 0.99311 1.00879 1.18881 0.90580 0.94357 0.79022 0.91699 1.21383 1.31589 1.12944 0.90313 0.92274 1.24889 0.95008 0.95005 0.98931 1.69894 1.36515 1.22671 1.23592 0.86438 0.78563 0.79582 0.82788 1.19862 1.20939 1.20974 1.47579 1.51143 1.11482 1.23866 1.21483 1.01984 0.83633 0.98485 1.15994 0.79601 0.85099 0.79438 1.90848 1.62672 1.15374 1.77151 1.42865 1.49206 1.18410 1.24017 1.17381 0.92774 0.92476 0.94785 1.21199 0.99254 0.93641 0.95151 1.20495 0.98138 0.99516 1.01951 1.17749 0.90841 0.91698 0.91280 1.42402 1.36937 1.11289 1.52000 1.20236 1.02990 0.92661 1.04544 1.20598 0.93833 0.99669 0.98727 0.95159 0.88728 0.96935 0.92780 0.93332 0.90510 0.93705 0.76442 0.83967 0.86314 0.77785 0.77932 0.86420 0.86141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.54 8.95 37.16 0.33 -3.21 16 2 C 0.27 7.03 2.64 -69.08 -0.18 6.85 16 3 H 0.07 1.95 6.90 -51.93 -0.36 1.59 16 4 C -0.52 -14.32 8.37 -34.44 -0.29 -14.61 16 5 H 0.06 1.61 7.65 -52.49 -0.40 1.20 16 6 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -25.29 11.32 55.43 0.63 -24.66 16 8 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 9 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 12 N -0.61 -13.17 2.75 -181.00 -0.50 -13.67 16 13 C 0.09 1.48 9.48 59.85 0.57 2.04 16 14 C 0.70 15.14 8.13 -86.92 -0.71 14.43 16 15 O -0.58 -14.82 13.10 5.28 0.07 -14.75 16 16 N -0.69 -11.75 5.22 -14.17 -0.07 -11.83 16 17 C 0.12 2.00 6.30 -83.58 -0.53 1.47 16 18 C -0.07 -1.21 8.69 -39.42 -0.34 -1.56 16 19 C -0.18 -2.52 9.89 -39.41 -0.39 -2.91 16 20 C 0.19 2.32 6.76 -83.69 -0.57 1.76 16 21 N -0.89 -7.72 9.10 32.45 0.30 -7.42 16 22 C -0.18 -2.20 9.89 -39.40 -0.39 -2.59 16 23 C -0.11 -1.43 9.96 -39.42 -0.39 -1.83 16 24 H 0.03 0.66 6.66 -51.92 -0.35 0.32 16 25 H 0.09 2.49 6.07 -51.93 -0.32 2.17 16 26 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 27 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.08 1.29 6.43 -51.93 -0.33 0.95 16 30 H 0.04 0.57 6.30 -51.93 -0.33 0.25 16 31 H 0.40 5.42 6.52 -40.82 -0.27 5.15 16 32 H 0.14 2.75 6.22 -52.49 -0.33 2.42 16 33 H 0.12 1.46 8.06 -52.48 -0.42 1.04 16 34 H 0.39 2.83 8.84 -40.82 -0.36 2.46 16 35 H 0.39 2.61 8.84 -40.82 -0.36 2.25 16 36 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 37 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 305.90 15.07 4.61 4.61 Total: -1.00 -32.50 305.90 -7.61 -40.12 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -4.64 Total: 9.86 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: -2.98 Total: 1.51 kcal Atomic # 7 Polarization: -57.93 SS G_CDS: 0.35 Total: -57.58 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: 0.07 Total: -14.75 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -32.50 -7.61 -40.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063096498.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.043 kcal (2) G-P(sol) polarization free energy of solvation -32.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds