Wall clock time and date at job start Mon Mar 30 2020 07:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46694 * 2 1 4 4 C 1.50695 * 109.46950 * 120.00318 * 2 1 3 5 5 H 1.07998 * 120.00346 * 120.00498 * 4 2 1 6 6 C 1.37879 * 120.00102 * 299.99476 * 4 2 1 7 7 N 1.31520 * 119.99788 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00370 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46925 * 0.02562 * 8 6 4 10 10 H 1.48494 * 109.46956 * 120.00387 * 8 6 4 11 11 H 1.48498 * 109.47211 * 240.00450 * 8 6 4 12 12 N 1.46502 * 109.46771 * 239.99985 * 2 1 3 13 13 C 1.46501 * 120.00243 * 299.99577 * 12 2 1 14 14 C 1.34777 * 119.99811 * 120.00207 * 12 2 1 15 15 O 1.21603 * 119.99842 * 359.97438 * 14 12 2 16 16 N 1.34771 * 120.00350 * 179.97438 * 14 12 2 17 17 C 1.40196 * 120.00300 * 184.58790 * 16 14 12 18 18 C 1.38841 * 119.99473 * 324.90759 * 17 16 14 19 19 C 1.38068 * 120.00371 * 180.02562 * 18 17 16 20 20 C 1.38877 * 119.99765 * 359.97438 * 19 18 17 21 21 N 1.39919 * 120.00373 * 179.97438 * 20 19 18 22 22 C 1.38878 * 119.99252 * 0.25563 * 20 19 18 23 23 C 1.38078 * 119.99160 * 359.51721 * 22 20 19 24 24 H 1.09010 * 109.47236 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47502 * 299.99651 * 1 2 3 26 26 H 1.08994 * 109.47351 * 60.00106 * 1 2 3 27 27 H 0.97003 * 119.99717 * 179.97438 * 7 6 4 28 28 H 1.09002 * 109.47051 * 270.00117 * 13 12 2 29 29 H 1.09000 * 109.46809 * 30.00619 * 13 12 2 30 30 H 1.08998 * 109.46694 * 150.00160 * 13 12 2 31 31 H 0.97004 * 119.99986 * 4.58436 * 16 14 12 32 32 H 1.07999 * 119.99500 * 0.02562 * 18 17 16 33 33 H 1.08004 * 119.99836 * 179.97438 * 19 18 17 34 34 H 0.96998 * 120.00172 * 359.97438 * 21 20 19 35 35 H 0.96999 * 119.99668 * 179.73153 * 21 20 19 36 36 H 1.07993 * 120.00643 * 179.74421 * 22 20 19 37 37 H 1.07997 * 119.99904 * 180.23198 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1196 4.0080 9 1 3.1483 -2.2858 3.6038 10 1 3.1472 -0.1859 4.8161 11 1 1.1678 -1.5867 4.8165 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0932 -1.4280 14 6 2.7931 -0.0356 -2.0834 15 8 3.0866 1.1287 -1.8911 16 7 3.2428 -0.6710 -3.1836 17 6 4.1263 -0.0209 -4.0567 18 6 4.0061 1.3448 -4.2760 19 6 4.8757 1.9851 -5.1362 20 6 5.8710 1.2632 -5.7818 21 7 6.7520 1.9118 -6.6540 22 6 5.9881 -0.1038 -5.5660 23 6 5.1212 -0.7429 -4.7021 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8899 26 1 -0.3634 0.5138 -0.8899 27 1 0.7083 1.1609 3.4844 28 1 2.4158 -2.7377 -0.9717 29 1 0.6904 -2.3002 -0.9847 30 1 1.6238 -2.2852 -2.5002 31 1 2.9552 -1.5782 -3.3713 32 1 3.2322 1.9062 -3.7736 33 1 4.7818 3.0474 -5.3070 34 1 6.6674 2.8658 -6.8081 35 1 7.4497 1.4082 -7.1019 36 1 6.7595 -0.6661 -6.0711 37 1 5.2146 -1.8052 -4.5313 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063096498.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:13 Heat of formation + Delta-G solvation = -12.774432 kcal Electronic energy + Delta-G solvation = -19587.809369 eV Core-core repulsion = 16557.467456 eV Total energy + Delta-G solvation = -3030.341912 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.137 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.56267 -39.85286 -37.37783 -36.22409 -34.92278 -33.76219 -31.74907 -31.17623 -28.41312 -27.55040 -27.23828 -24.12836 -23.59939 -22.25408 -20.70004 -19.28182 -18.52000 -18.01111 -17.79853 -17.37672 -16.93915 -16.34987 -15.96398 -15.01864 -14.91909 -14.87765 -14.42476 -14.32353 -14.05900 -13.88181 -13.53789 -13.42674 -12.98902 -12.92435 -12.69261 -12.56393 -12.27823 -12.16178 -12.07725 -11.80544 -11.15204 -10.93669 -10.50917 -10.32386 -9.79394 -9.31495 -8.13451 -8.02091 -6.28894 0.55499 0.66939 1.41735 1.43509 1.54759 1.84685 2.26999 2.43830 3.05707 3.10930 3.15161 3.18894 4.05667 4.17317 4.34420 4.54205 4.59129 4.68167 4.72958 4.79610 4.90880 5.01831 5.07842 5.15505 5.27883 5.36341 5.45168 5.52855 5.65946 5.69045 5.74461 6.02479 6.12224 6.17866 6.32863 6.68748 6.79158 7.12294 7.17019 7.38969 7.71799 8.91885 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.032768 B = 0.004268 C = 0.004238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.293663 B = 6558.606437 C = 6605.885498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.278 3.722 3 H 0.009 0.991 4 C -0.537 4.537 5 H 0.059 0.941 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.966 3.034 9 H -0.266 1.266 10 H -0.286 1.286 11 H -0.273 1.273 12 N -0.614 5.614 13 C 0.084 3.916 14 C 0.689 3.311 15 O -0.631 6.631 16 N -0.674 5.674 17 C 0.085 3.915 18 C -0.097 4.097 19 C -0.193 4.193 20 C 0.197 3.803 21 N -0.869 5.869 22 C -0.179 4.179 23 C -0.095 4.095 24 H 0.049 0.951 25 H 0.069 0.931 26 H 0.019 0.981 27 H 0.264 0.736 28 H 0.055 0.945 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.416 0.584 32 H 0.104 0.896 33 H 0.128 0.872 34 H 0.404 0.596 35 H 0.408 0.592 36 H 0.154 0.846 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.833 -5.910 -17.963 20.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.175 3.825 3 H 0.027 0.973 4 C -0.575 4.575 5 H 0.078 0.922 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.791 3.209 9 H -0.190 1.190 10 H -0.212 1.212 11 H -0.198 1.198 12 N -0.348 5.348 13 C -0.058 4.058 14 C 0.391 3.609 15 O -0.513 6.513 16 N -0.325 5.325 17 C -0.010 4.010 18 C -0.118 4.118 19 C -0.216 4.216 20 C 0.091 3.909 21 N -0.410 5.410 22 C -0.202 4.202 23 C -0.116 4.116 24 H 0.068 0.932 25 H 0.088 0.912 26 H 0.038 0.962 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.095 0.905 30 H 0.105 0.895 31 H 0.255 0.745 32 H 0.122 0.878 33 H 0.146 0.854 34 H 0.233 0.767 35 H 0.238 0.762 36 H 0.171 0.829 37 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 7.873 -5.044 -17.599 19.929 hybrid contribution 0.027 -0.087 0.965 0.970 sum 7.900 -5.132 -16.634 19.116 Atomic orbital electron populations 1.21896 0.97073 1.00216 0.99943 1.18455 0.91438 0.91935 0.80653 0.97316 1.21617 1.31749 1.12997 0.91165 0.92246 1.25737 0.95120 0.95666 1.01987 1.70036 1.37393 1.23923 1.24335 0.85390 0.78210 0.78430 0.78853 1.18987 1.21247 1.19839 1.47441 1.51334 1.13291 1.22770 1.21744 1.02033 0.80593 1.01463 1.16218 0.79575 0.84694 0.80424 1.90816 1.64340 1.17707 1.78435 1.42508 1.48785 1.18770 1.22448 1.17633 0.94528 0.92594 0.96286 1.21037 0.99750 0.94382 0.96639 1.20576 0.98592 1.00241 1.02170 1.17850 0.90233 0.92089 0.90678 1.42382 1.36128 1.11971 1.50551 1.20660 1.03095 0.92643 1.03805 1.20885 0.92379 1.00867 0.97484 0.93156 0.91250 0.96216 0.92656 0.92632 0.90501 0.89476 0.74458 0.87764 0.85390 0.76718 0.76207 0.82862 0.83350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.52 8.95 71.98 0.64 -5.88 16 2 C 0.28 14.90 2.64 44.24 0.12 15.02 16 3 H 0.01 0.57 6.90 -2.39 -0.02 0.55 16 4 C -0.54 -29.84 8.37 25.60 0.21 -29.63 16 5 H 0.06 3.22 7.65 -2.91 -0.02 3.20 16 6 C 0.01 0.80 5.30 84.65 0.45 1.24 16 7 N -0.92 -53.70 11.32 21.45 0.24 -53.46 16 8 Si 0.97 43.74 29.54 68.60 2.03 45.77 16 9 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 10 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 11 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 12 N -0.61 -27.10 2.75 -844.82 -2.33 -29.42 16 13 C 0.08 2.68 9.48 127.77 1.21 3.89 16 14 C 0.69 30.92 8.13 179.06 1.46 32.37 16 15 O -0.63 -34.37 13.10 -4.04 -0.05 -34.43 16 16 N -0.67 -22.59 5.22 -317.01 -1.66 -24.25 16 17 C 0.09 2.76 6.30 38.09 0.24 3.00 16 18 C -0.10 -3.43 8.69 22.37 0.19 -3.24 16 19 C -0.19 -5.43 9.89 22.38 0.22 -5.21 16 20 C 0.20 4.39 6.76 38.16 0.26 4.65 16 21 N -0.87 -12.26 9.10 -51.26 -0.47 -12.72 16 22 C -0.18 -3.71 9.89 22.39 0.22 -3.48 16 23 C -0.10 -2.29 9.96 22.38 0.22 -2.07 16 24 H 0.05 2.21 6.66 -2.38 -0.02 2.20 16 25 H 0.07 3.78 6.07 -2.39 -0.01 3.76 16 26 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 28 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.08 2.45 6.43 -2.39 -0.02 2.43 16 30 H 0.09 1.99 6.30 -2.39 -0.02 1.98 16 31 H 0.42 10.49 6.52 -92.71 -0.60 9.89 16 32 H 0.10 4.44 6.22 -2.91 -0.02 4.42 16 33 H 0.13 3.19 8.06 -2.91 -0.02 3.16 16 34 H 0.40 4.62 8.84 -92.71 -0.82 3.80 16 35 H 0.41 3.72 8.84 -92.71 -0.82 2.90 16 36 H 0.15 2.10 8.06 -2.91 -0.02 2.08 16 37 H 0.15 2.69 8.06 -2.91 -0.02 2.67 16 Total: -1.00 -74.85 305.90 2.10 -72.76 By element: Atomic # 1 Polarization: 26.21 SS G_CDS: -1.12 Total: 25.09 kcal Atomic # 6 Polarization: 5.21 SS G_CDS: 5.45 Total: 10.66 kcal Atomic # 7 Polarization: -115.65 SS G_CDS: -4.21 Total: -119.85 kcal Atomic # 8 Polarization: -34.37 SS G_CDS: -0.05 Total: -34.43 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -74.85 2.10 -72.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063096498.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.983 kcal (2) G-P(sol) polarization free energy of solvation -74.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds