Wall clock time and date at job start Mon Mar 30 2020 06:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47409 * 2 1 4 4 N 1.46904 * 109.46943 * 119.99892 * 2 1 3 5 5 C 1.46900 * 111.00255 * 205.71041 * 4 2 1 6 6 H 1.09000 * 109.46872 * 326.37000 * 5 4 2 7 7 C 1.52999 * 109.47265 * 86.36646 * 5 4 2 8 8 C 1.50696 * 109.47224 * 206.37298 * 5 4 2 9 9 H 1.07999 * 120.00054 * 359.97438 * 8 5 4 10 10 C 1.37880 * 120.00025 * 180.02562 * 8 5 4 11 11 N 1.31520 * 119.99790 * 359.97438 * 10 8 5 12 12 Si 1.86796 * 120.00302 * 179.97438 * 10 8 5 13 13 H 1.48504 * 109.47233 * 59.99514 * 12 10 8 14 14 H 1.48495 * 109.47507 * 179.97438 * 12 10 8 15 15 H 1.48497 * 109.46904 * 299.99637 * 12 10 8 16 16 C 1.50699 * 109.47320 * 239.99647 * 2 1 3 17 17 C 1.38258 * 119.92874 * 279.72925 * 16 2 1 18 18 C 1.38240 * 120.14342 * 179.68916 * 17 16 2 19 19 C 1.38554 * 120.02621 * 0.59051 * 18 17 16 20 20 C 1.39268 * 119.82826 * 359.68595 * 19 18 17 21 21 C 1.38233 * 119.92845 * 100.00197 * 16 2 1 22 22 O 1.36492 * 108.63584 * 179.97438 * 20 19 18 23 23 C 1.43985 * 105.49178 * 342.72516 * 22 20 19 24 24 O 1.36493 * 131.53062 * 179.68154 * 19 18 17 25 25 H 1.09000 * 109.47237 * 175.52675 * 1 2 3 26 26 H 1.08997 * 109.47333 * 295.52768 * 1 2 3 27 27 H 1.08997 * 109.46630 * 55.53249 * 1 2 3 28 28 H 1.00896 * 110.99672 * 329.66419 * 4 2 1 29 29 H 1.08997 * 109.47155 * 185.75358 * 7 5 4 30 30 H 1.09005 * 109.46960 * 305.75724 * 7 5 4 31 31 H 1.08997 * 109.46764 * 65.75521 * 7 5 4 32 32 H 0.96998 * 120.00084 * 179.97438 * 11 10 8 33 33 H 1.08003 * 119.92677 * 359.97438 * 17 16 2 34 34 H 1.08001 * 119.98630 * 180.27440 * 18 17 16 35 35 H 1.08002 * 119.98599 * 0.02562 * 21 16 2 36 36 H 1.09002 * 110.57385 * 268.55782 * 23 22 20 37 37 H 1.08998 * 110.57673 * 145.67693 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 3.3601 -0.2195 1.5702 6 1 3.9186 0.0323 0.6687 7 6 3.2361 1.0214 2.4566 8 6 4.0851 -1.3047 2.3236 9 1 3.5987 -2.2509 2.5089 10 6 5.3692 -1.0892 2.7772 11 7 5.9614 0.0634 2.5520 12 14 6.2678 -2.4340 3.7118 13 1 6.3886 -3.6385 2.8517 14 1 7.6228 -1.9559 4.0864 15 1 5.5064 -2.7769 4.9397 16 6 2.0324 -0.7105 -1.2304 17 6 2.0714 -2.0921 -1.2615 18 6 2.5254 -2.7486 -2.3902 19 6 2.9542 -2.0221 -3.4894 20 6 2.9202 -0.6302 -3.4559 21 6 2.4584 0.0208 -2.3234 22 8 3.3896 -0.1537 -4.6457 23 6 4.0920 -1.2553 -5.2509 24 8 3.4443 -2.4176 -4.7003 25 1 -0.3634 -1.0245 -0.0802 26 1 -0.3634 0.4429 0.9273 27 1 -0.3632 0.5816 -0.8473 28 1 1.3736 -0.5864 1.9672 29 1 4.2275 1.4320 2.6476 30 1 2.6242 1.7689 1.9516 31 1 2.7681 0.7472 3.4020 32 1 6.8646 0.2152 2.8714 33 1 1.7422 -2.6599 -0.4038 34 1 2.5507 -3.8280 -2.4134 35 1 2.4314 1.1001 -2.2945 36 1 5.1460 -1.2364 -4.9734 37 1 3.9799 -1.2320 -6.3349 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067406012.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:59 Heat of formation + Delta-G solvation = -36.257321 kcal Electronic energy + Delta-G solvation = -19942.946899 eV Core-core repulsion = 16879.293941 eV Total energy + Delta-G solvation = -3063.652958 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.89302 -38.39623 -36.06881 -35.86737 -33.18587 -30.94670 -30.12906 -28.78145 -26.81645 -25.62448 -25.09094 -23.25342 -22.59095 -20.75156 -20.04447 -17.62439 -17.20178 -16.97516 -16.31012 -15.93178 -14.94907 -14.68865 -14.22401 -14.01500 -13.67648 -13.58184 -13.19567 -12.84360 -12.77311 -12.44041 -12.26895 -12.14787 -11.48049 -11.34006 -11.10145 -10.88518 -10.87526 -10.65827 -10.45717 -10.40338 -10.09801 -9.80108 -8.98747 -8.49059 -8.34367 -7.67534 -7.31789 -5.96565 -3.99048 1.51385 1.59517 2.96850 3.35256 3.39432 3.42412 3.62050 3.98608 4.45184 4.77837 4.78432 4.91701 5.08842 5.24943 5.35737 5.40988 5.48780 5.61748 5.72596 5.77108 5.81371 6.05792 6.17081 6.36045 6.40427 6.42839 6.63885 6.69001 6.82679 6.84093 6.99300 7.10218 7.38512 7.43887 7.73453 7.89492 8.27826 8.53259 8.60906 9.07165 9.65849 11.10982 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.018405 B = 0.006034 C = 0.005225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.947200 B = 4639.084788 C = 5357.343916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.121 3.879 3 H 0.048 0.952 4 N -0.677 5.677 5 C 0.213 3.787 6 H 0.034 0.966 7 C -0.167 4.167 8 C -0.493 4.493 9 H 0.062 0.938 10 C 0.056 3.944 11 N -0.898 5.898 12 Si 0.896 3.104 13 H -0.278 1.278 14 H -0.290 1.290 15 H -0.278 1.278 16 C -0.047 4.047 17 C -0.065 4.065 18 C -0.105 4.105 19 C 0.017 3.983 20 C 0.021 3.979 21 C -0.098 4.098 22 O -0.315 6.315 23 C 0.214 3.786 24 O -0.315 6.315 25 H 0.062 0.938 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.330 0.670 29 H 0.085 0.915 30 H 0.004 0.996 31 H 0.030 0.970 32 H 0.259 0.741 33 H 0.148 0.852 34 H 0.130 0.870 35 H 0.128 0.872 36 H 0.080 0.920 37 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.639 -0.919 -10.736 13.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.011 3.989 3 H 0.065 0.935 4 N -0.308 5.308 5 C 0.105 3.895 6 H 0.052 0.948 7 C -0.226 4.226 8 C -0.532 4.532 9 H 0.080 0.920 10 C -0.145 4.145 11 N -0.538 5.538 12 Si 0.724 3.276 13 H -0.203 1.203 14 H -0.215 1.215 15 H -0.204 1.204 16 C -0.048 4.048 17 C -0.084 4.084 18 C -0.124 4.124 19 C -0.027 4.027 20 C -0.023 4.023 21 C -0.117 4.117 22 O -0.231 6.231 23 C 0.102 3.898 24 O -0.232 6.232 25 H 0.081 0.919 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.148 0.852 29 H 0.103 0.897 30 H 0.023 0.977 31 H 0.049 0.951 32 H 0.069 0.931 33 H 0.165 0.835 34 H 0.148 0.852 35 H 0.146 0.854 36 H 0.097 0.903 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.243 -1.364 -11.273 13.468 hybrid contribution 0.782 0.302 0.640 1.055 sum -6.460 -1.062 -10.633 12.487 Atomic orbital electron populations 1.21954 0.94651 1.02359 1.01423 1.20288 0.93557 0.95083 0.90019 0.93453 1.60766 1.05817 1.58983 1.05232 1.19194 0.83907 0.91801 0.94598 0.94823 1.22422 1.02329 0.98832 0.99012 1.21083 0.98274 0.99834 1.34005 0.91998 1.24940 0.97498 0.95591 0.96459 1.69888 1.13817 1.22905 1.47143 0.86603 0.78628 0.82160 0.80226 1.20342 1.21543 1.20380 1.19672 0.97432 0.93800 0.93877 1.20862 0.97215 0.94068 0.96234 1.20127 1.02381 0.99986 0.89884 1.19767 1.03673 0.92015 0.87214 1.19627 1.03784 0.91244 0.87629 1.19907 1.02136 1.00166 0.89493 1.87300 1.69755 1.36335 1.29749 1.25512 0.94595 0.71395 0.98304 1.87298 1.71353 1.35208 1.29351 0.91854 0.92460 0.92637 0.85203 0.89674 0.97723 0.95062 0.93093 0.83463 0.85225 0.85426 0.90259 0.85754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.20 37.16 0.34 -1.59 16 2 C 0.12 2.03 2.61 -68.86 -0.18 1.85 16 3 H 0.05 0.84 7.06 -51.93 -0.37 0.48 16 4 N -0.68 -13.26 5.27 -102.17 -0.54 -13.80 16 5 C 0.21 5.15 2.37 -68.87 -0.16 4.98 16 6 H 0.03 0.92 7.65 -51.93 -0.40 0.52 16 7 C -0.17 -3.90 8.85 37.16 0.33 -3.57 16 8 C -0.49 -13.31 8.84 -34.44 -0.30 -13.61 16 9 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 10 C 0.06 1.53 5.30 -17.82 -0.09 1.44 16 11 N -0.90 -25.65 11.38 55.43 0.63 -25.02 16 12 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 13 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 14 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 15 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 16 C -0.05 -0.80 4.66 -104.62 -0.49 -1.29 16 17 C -0.07 -1.10 9.32 -39.57 -0.37 -1.47 16 18 C -0.11 -1.69 10.06 -39.46 -0.40 -2.09 16 19 C 0.02 0.29 7.15 -39.08 -0.28 0.01 16 20 C 0.02 0.36 7.15 -39.08 -0.28 0.08 16 21 C -0.10 -1.66 9.68 -39.47 -0.38 -2.04 16 22 O -0.31 -4.94 11.40 -45.66 -0.52 -5.46 16 23 C 0.21 2.65 8.89 101.05 0.90 3.55 16 24 O -0.32 -4.86 11.40 -45.67 -0.52 -5.38 16 25 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 26 H 0.06 0.70 8.03 -51.93 -0.42 0.28 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.33 6.06 8.01 -39.29 -0.31 5.74 16 29 H 0.08 2.23 6.24 -51.93 -0.32 1.91 16 30 H 0.00 0.08 7.49 -51.93 -0.39 -0.31 16 31 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.26 7.13 8.31 -40.82 -0.34 6.80 16 33 H 0.15 2.43 7.70 -52.48 -0.40 2.03 16 34 H 0.13 1.80 8.06 -52.49 -0.42 1.37 16 35 H 0.13 1.97 8.03 -52.49 -0.42 1.55 16 36 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.13 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 309.50 15.07 4.66 4.66 Total: -1.00 -29.82 309.50 -7.79 -37.61 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -5.12 Total: 4.71 kcal Atomic # 6 Polarization: -12.38 SS G_CDS: -1.37 Total: -13.74 kcal Atomic # 7 Polarization: -38.91 SS G_CDS: 0.09 Total: -38.82 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: -1.04 Total: -10.85 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -29.82 -7.79 -37.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067406012.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.350 kcal (2) G-P(sol) polarization free energy of solvation -29.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds